Wall clock time and date at job start Tue Mar 31 2020 00:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.35258 * 126.06362 * 2 1 4 4 C 1.40427 * 107.85704 * 180.18197 * 3 2 1 5 5 N 1.39988 * 125.97446 * 179.82945 * 4 3 2 6 6 C 1.46504 * 119.99723 * 359.71074 * 5 4 3 7 7 H 1.09001 * 109.46891 * 35.00452 * 6 5 4 8 8 C 1.50697 * 109.47650 * 275.00338 * 6 5 4 9 9 O 1.20826 * 119.99685 * 0.02562 * 8 6 5 10 10 O 1.34219 * 120.00226 * 180.02562 * 8 6 5 11 11 C 1.53006 * 109.46883 * 155.00018 * 6 5 4 12 12 C 1.52997 * 117.50138 * 248.62707 * 11 6 5 13 13 C 1.52993 * 117.49973 * 180.02562 * 11 6 5 14 14 N 1.31221 * 108.05201 * 359.56641 * 4 3 2 15 15 N 1.34952 * 126.07090 * 179.70779 * 2 1 3 16 16 C 1.46502 * 125.97196 * 359.97438 * 15 2 1 17 17 C 1.50695 * 109.47168 * 269.97572 * 16 15 2 18 18 H 1.08006 * 119.99915 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00076 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00036 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 120.00112 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.46922 * 59.99855 * 21 19 17 23 23 H 1.48497 * 109.46856 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.46741 * 300.00024 * 21 19 17 25 25 H 1.09004 * 109.46937 * 270.29152 * 1 2 3 26 26 H 1.08993 * 109.47267 * 30.29489 * 1 2 3 27 27 H 1.09005 * 109.46690 * 150.29514 * 1 2 3 28 28 H 1.07998 * 126.07078 * 0.04140 * 3 2 1 29 29 H 0.96990 * 120.00219 * 179.71639 * 5 4 3 30 30 H 0.96703 * 117.00063 * 180.02562 * 10 8 6 31 31 H 1.09001 * 115.54721 * 34.33301 * 11 6 5 32 32 H 1.09007 * 117.49860 * 359.97438 * 12 11 6 33 33 H 1.08994 * 117.50266 * 145.02232 * 12 11 6 34 34 H 1.09003 * 117.50052 * 214.98523 * 13 11 6 35 35 H 1.09002 * 117.49889 * 0.02562 * 13 11 6 36 36 H 1.09003 * 109.47037 * 29.98060 * 16 15 2 37 37 H 1.09002 * 109.47087 * 149.97474 * 16 15 2 38 38 H 0.97003 * 119.99886 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3033 1.0934 0.0000 4 6 3.6373 0.6546 -0.0042 5 7 4.7724 1.4739 -0.0090 6 6 4.6238 2.9313 -0.0163 7 1 3.7498 3.2103 0.5723 8 6 4.4487 3.4115 -1.4340 9 8 4.4478 2.6176 -2.3448 10 8 4.2940 4.7209 -1.6848 11 6 5.8730 3.5744 0.5895 12 6 5.7232 4.2713 1.9432 13 6 5.9119 5.1015 0.6726 14 7 3.6338 -0.6576 0.0028 15 7 2.3017 -1.0908 0.0056 16 6 1.8500 -2.4844 0.0132 17 6 1.6962 -2.9548 1.4366 18 1 1.9128 -2.2828 2.2538 19 6 1.2790 -4.2432 1.6956 20 7 1.0147 -5.0614 0.7004 21 14 1.0876 -4.8261 3.4600 22 1 0.0866 -3.9781 4.1556 23 1 0.6311 -6.2392 3.4677 24 1 2.3939 -4.7246 4.1592 25 1 -0.3633 0.0052 1.0277 26 1 -0.3633 0.8873 -0.5184 27 1 -0.3633 -0.8927 -0.5093 28 1 1.9720 2.1213 0.0006 29 1 5.6572 1.0766 -0.0076 30 1 4.1848 4.9808 -2.6098 31 1 6.8115 3.0569 0.3906 32 1 4.7345 4.2721 2.4022 33 1 6.5631 4.2124 2.6353 34 1 6.8760 5.5891 0.5284 35 1 5.0472 5.6482 0.2962 36 1 0.8910 -2.5584 -0.4996 37 1 2.5842 -3.1071 -0.4980 38 1 0.7208 -5.9677 0.8827 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605213353.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:13 Heat of formation + Delta-G solvation = -9.040886 kcal Electronic energy + Delta-G solvation = -21516.677007 eV Core-core repulsion = 18167.814801 eV Total energy + Delta-G solvation = -3348.862206 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.04256 -41.28095 -38.56210 -37.20684 -36.22399 -35.18628 -33.02241 -32.53507 -29.31144 -28.21042 -27.45407 -24.90366 -23.66513 -23.03542 -21.84992 -21.18377 -20.41443 -19.11561 -18.77630 -17.67318 -17.65861 -17.10706 -16.69318 -16.42184 -16.15083 -15.79220 -15.07132 -14.91805 -14.61713 -14.38069 -14.08342 -13.72461 -13.65422 -13.35301 -13.12482 -12.80949 -12.63600 -12.63182 -12.44570 -12.21848 -12.18683 -12.11910 -11.85620 -11.32590 -11.26006 -11.16281 -10.76275 -10.72276 -9.42214 -8.72418 -8.27625 -6.49155 1.21240 1.24713 1.38648 1.40932 1.48200 1.54694 1.95494 2.32241 2.35750 2.58729 2.98200 3.12326 3.53716 3.85223 3.96681 4.02818 4.13923 4.25564 4.42338 4.48516 4.55766 4.71076 4.75677 4.89981 4.92982 4.95739 5.06409 5.08250 5.22786 5.27257 5.39036 5.50854 5.56178 5.66856 5.83754 6.21363 6.34901 6.62054 6.67875 7.05988 7.21824 7.27380 8.75001 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.025916 B = 0.003942 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.172539 B = 7101.816300 C = 7577.935951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.099 3.901 3 C -0.334 4.334 4 C 0.321 3.679 5 N -0.695 5.695 6 C 0.218 3.782 7 H 0.125 0.875 8 C 0.464 3.536 9 O -0.548 6.548 10 O -0.500 6.500 11 C -0.182 4.182 12 C -0.162 4.162 13 C -0.145 4.145 14 N -0.397 5.397 15 N -0.353 5.353 16 C 0.277 3.723 17 C -0.551 4.551 18 H 0.051 0.949 19 C 0.020 3.980 20 N -0.921 5.921 21 Si 0.974 3.026 22 H -0.262 1.262 23 H -0.273 1.273 24 H -0.276 1.276 25 H 0.086 0.914 26 H 0.109 0.891 27 H 0.062 0.938 28 H 0.160 0.840 29 H 0.407 0.593 30 H 0.422 0.578 31 H 0.117 0.883 32 H 0.101 0.899 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.048 0.952 37 H 0.015 0.985 38 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.861 22.983 0.537 23.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.033 4.033 3 C -0.366 4.366 4 C 0.064 3.936 5 N -0.336 5.336 6 C 0.109 3.891 7 H 0.142 0.858 8 C 0.305 3.695 9 O -0.437 6.437 10 O -0.312 6.312 11 C -0.201 4.201 12 C -0.199 4.199 13 C -0.182 4.182 14 N -0.229 5.229 15 N -0.133 5.133 16 C 0.158 3.842 17 C -0.589 4.589 18 H 0.069 0.931 19 C -0.181 4.181 20 N -0.560 5.560 21 Si 0.797 3.203 22 H -0.186 1.186 23 H -0.198 1.198 24 H -0.201 1.201 25 H 0.105 0.895 26 H 0.127 0.873 27 H 0.081 0.919 28 H 0.177 0.823 29 H 0.243 0.757 30 H 0.284 0.716 31 H 0.135 0.865 32 H 0.120 0.880 33 H 0.127 0.873 34 H 0.130 0.870 35 H 0.132 0.868 36 H 0.065 0.935 37 H 0.033 0.967 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.387 21.402 0.633 22.079 hybrid contribution -0.126 -0.399 -0.322 0.528 sum 5.260 21.003 0.311 21.654 Atomic orbital electron populations 1.20486 0.85514 1.04064 1.04024 1.21631 0.96423 0.86666 0.98542 1.20746 0.89924 0.99207 1.26697 1.19328 0.88798 0.89169 0.96301 1.43161 1.04204 1.02085 1.84146 1.19917 1.01510 0.79279 0.88437 0.85786 1.24741 0.70968 0.80304 0.93482 1.90751 1.47474 1.57157 1.48332 1.84505 1.83654 1.25189 1.37874 1.22198 0.96517 0.97393 1.04019 1.23189 1.04373 1.02019 0.90289 1.23157 1.05132 0.89984 0.99938 1.77245 0.99471 1.10857 1.35288 1.48655 1.02052 1.07215 1.55412 1.19123 0.94393 0.72991 0.97710 1.21424 1.47339 0.98414 0.91717 0.93058 1.25795 0.93951 0.95865 1.02463 1.70016 1.45208 1.07405 1.33353 0.85373 0.78768 0.77665 0.78476 1.18643 1.19820 1.20142 0.89525 0.87284 0.91939 0.82275 0.75747 0.71646 0.86525 0.88023 0.87306 0.86962 0.86804 0.93453 0.96725 0.91795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.70 10.11 71.24 0.72 -1.98 16 2 C 0.10 4.14 6.92 41.39 0.29 4.43 16 3 C -0.33 -12.65 9.83 22.12 0.22 -12.44 16 4 C 0.32 13.23 8.06 133.39 1.07 14.30 16 5 N -0.69 -21.97 4.80 -326.96 -1.57 -23.54 16 6 C 0.22 4.92 2.72 44.25 0.12 5.04 16 7 H 0.12 2.58 6.89 -2.39 -0.02 2.56 16 8 C 0.46 11.18 7.66 71.23 0.55 11.73 16 9 O -0.55 -18.77 17.12 21.97 0.38 -18.39 16 10 O -0.50 -7.40 11.36 -51.31 -0.58 -7.98 16 11 C -0.18 -2.95 5.34 -10.79 -0.06 -3.01 16 12 C -0.16 -2.06 10.17 30.58 0.31 -1.74 16 13 C -0.14 -1.63 9.44 30.58 0.29 -1.34 16 14 N -0.40 -19.98 12.59 -54.55 -0.69 -20.67 16 15 N -0.35 -17.84 3.59 -338.43 -1.22 -19.06 16 16 C 0.28 15.41 5.99 85.63 0.51 15.93 16 17 C -0.55 -31.78 9.39 25.60 0.24 -31.54 16 18 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 19 C 0.02 1.11 5.46 84.65 0.46 1.57 16 20 N -0.92 -53.62 13.29 21.45 0.28 -53.34 16 21 Si 0.97 43.72 29.54 68.60 2.03 45.75 16 22 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 23 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 24 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 25 H 0.09 2.67 8.14 -2.38 -0.02 2.65 16 26 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 27 H 0.06 2.17 7.07 -2.38 -0.02 2.15 16 28 H 0.16 4.77 7.44 -2.91 -0.02 4.75 16 29 H 0.41 12.38 8.68 -92.72 -0.80 11.57 16 30 H 0.42 3.21 9.10 -74.06 -0.67 2.54 16 31 H 0.12 1.86 8.07 -2.39 -0.02 1.84 16 32 H 0.10 1.29 8.05 -2.38 -0.02 1.27 16 33 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.11 1.23 6.85 -2.39 -0.02 1.21 16 36 H 0.05 2.61 7.04 -2.39 -0.02 2.59 16 37 H 0.01 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -76.60 330.71 2.98 -73.62 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: -0.37 Total: 22.66 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: 4.72 Total: 0.95 kcal Atomic # 7 Polarization: -113.42 SS G_CDS: -3.19 Total: -116.60 kcal Atomic # 8 Polarization: -26.16 SS G_CDS: -0.21 Total: -26.37 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -76.60 2.98 -73.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605213353.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.576 kcal (2) G-P(sol) polarization free energy of solvation -76.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds