Wall clock time and date at job start Tue Mar 31 2020 00:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30832 * 125.90044 * 2 1 4 4 N 1.40091 * 108.20636 * 180.25502 * 3 2 1 5 5 C 1.46494 * 126.04078 * 179.69795 * 4 3 2 6 6 C 1.34953 * 107.91829 * 359.71981 * 4 3 2 7 7 C 1.35315 * 107.75128 * 359.97438 * 6 4 3 8 8 C 1.50697 * 126.04004 * 180.02562 * 7 6 4 9 9 C 1.50700 * 109.46672 * 265.02130 * 8 7 6 10 10 O 1.21282 * 120.00222 * 0.02562 * 9 8 7 11 11 N 1.34780 * 120.00120 * 179.97438 * 9 8 7 12 12 C 1.47067 * 136.05152 * 359.63028 * 11 9 8 13 13 C 1.53503 * 87.98291 * 207.37706 * 12 11 9 14 14 O 1.42901 * 114.20684 * 87.52078 * 13 12 11 15 15 C 1.50696 * 114.38434 * 220.33183 * 13 12 11 16 16 H 1.08000 * 120.00223 * 93.68552 * 15 13 12 17 17 C 1.37878 * 120.00408 * 273.68393 * 15 13 12 18 18 N 1.31516 * 119.99627 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 120.00158 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47322 * 60.00006 * 19 17 15 21 21 H 1.48505 * 109.46704 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47108 * 299.99657 * 19 17 15 23 23 C 1.47066 * 136.06263 * 180.02562 * 11 9 8 24 24 H 1.08997 * 109.47457 * 270.21454 * 1 2 3 25 25 H 1.09007 * 109.46779 * 30.21154 * 1 2 3 26 26 H 1.09001 * 109.47660 * 150.20845 * 1 2 3 27 27 H 1.09007 * 109.47198 * 270.02878 * 5 4 3 28 28 H 1.09002 * 109.46861 * 30.02338 * 5 4 3 29 29 H 1.08993 * 109.47620 * 150.02470 * 5 4 3 30 30 H 1.08007 * 126.12005 * 180.02562 * 6 4 3 31 31 H 1.08990 * 109.47177 * 145.02525 * 8 7 6 32 32 H 1.09001 * 109.47163 * 25.01777 * 8 7 6 33 33 H 1.09003 * 113.46750 * 322.15352 * 12 11 9 34 34 H 1.09000 * 113.47312 * 92.59797 * 12 11 9 35 35 H 0.96702 * 114.00029 * 86.39570 * 14 13 12 36 36 H 0.97001 * 119.99886 * 179.97438 * 18 17 15 37 37 H 1.09001 * 113.46506 * 267.40576 * 23 11 9 38 38 H 1.08997 * 113.46560 * 37.84028 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 -0.0059 5 6 4.7899 1.5006 -0.0142 6 6 3.6141 -0.7155 -0.0032 7 6 2.3270 -1.1331 0.0048 8 6 1.8598 -2.5658 0.0109 9 6 1.5792 -3.0085 -1.4020 10 8 1.7430 -2.2368 -2.3232 11 7 1.1471 -4.2624 -1.6421 12 6 0.8445 -5.4515 -0.8314 13 6 1.1850 -6.3082 -2.0588 14 8 2.5693 -6.6436 -2.1735 15 6 0.2676 -7.4849 -2.2700 16 1 -0.5896 -7.3915 -2.9203 17 6 0.5224 -8.6810 -1.6331 18 7 1.5660 -8.7946 -0.8408 19 14 -0.6144 -10.1398 -1.8956 20 1 -0.6354 -10.4981 -3.3365 21 1 -0.1251 -11.2972 -1.1042 22 1 -1.9867 -9.7836 -1.4540 23 6 0.7776 -5.0458 -2.8306 24 1 -0.3634 0.0038 1.0276 25 1 -0.3633 0.8882 -0.5172 26 1 -0.3634 -0.8918 -0.5106 27 1 5.0772 1.7134 -1.0439 28 1 4.5592 2.4341 0.4990 29 1 5.6121 0.9991 0.4962 30 1 4.4890 -1.3488 -0.0060 31 1 0.9498 -2.6487 0.6050 32 1 2.6348 -3.1989 0.4429 33 1 1.5320 -5.5950 0.0023 34 1 -0.2015 -5.5182 -0.5321 35 1 2.8230 -7.4393 -1.6861 36 1 1.7451 -9.6359 -0.3925 37 1 -0.2863 -5.0043 -3.0643 38 1 1.4080 -4.8443 -3.6966 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001634380443.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:22 Heat of formation + Delta-G solvation = 8.241490 kcal Electronic energy + Delta-G solvation = -21626.903847 eV Core-core repulsion = 18278.791061 eV Total energy + Delta-G solvation = -3348.112786 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.27231 -41.09271 -38.99498 -35.82323 -35.08983 -34.08304 -33.04320 -30.82569 -30.31995 -28.58374 -26.97260 -26.72993 -25.43470 -22.21325 -21.58079 -20.60025 -19.78162 -19.17410 -17.85297 -17.61049 -17.11295 -16.56522 -16.46917 -16.13662 -15.90459 -15.29776 -14.94351 -14.49798 -14.38518 -14.34092 -13.96437 -13.83166 -13.68374 -13.36398 -13.22641 -13.01105 -12.95460 -12.75640 -12.73071 -12.64111 -12.19593 -12.12139 -11.49309 -11.34583 -10.88214 -10.60141 -10.19429 -10.13722 -9.50078 -9.28802 -8.23850 -6.40567 0.90641 1.51119 1.53099 1.59316 1.61319 1.68907 1.76048 2.22532 2.44585 2.98559 3.55772 3.66807 3.87284 3.91355 4.16392 4.21708 4.26309 4.38848 4.41532 4.44586 4.55206 4.65841 4.66975 4.69188 4.76808 4.88404 4.96840 4.99688 5.04205 5.10667 5.13267 5.30514 5.71916 5.76647 5.95945 6.14136 6.64757 6.73627 6.99425 7.27774 7.34344 7.53903 8.81879 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.037210 B = 0.003636 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.295273 B = 7699.252933 C = 7941.695379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.074 3.926 3 N -0.334 5.334 4 N -0.382 5.382 5 C 0.095 3.905 6 C 0.066 3.934 7 C -0.238 4.238 8 C -0.041 4.041 9 C 0.531 3.469 10 O -0.594 6.594 11 N -0.639 5.639 12 C 0.088 3.912 13 C 0.218 3.782 14 O -0.587 6.587 15 C -0.554 4.554 16 H 0.073 0.927 17 C 0.034 3.966 18 N -0.916 5.916 19 Si 0.969 3.031 20 H -0.277 1.277 21 H -0.283 1.283 22 H -0.266 1.266 23 C 0.104 3.896 24 H 0.099 0.901 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.095 0.905 29 H 0.117 0.883 30 H 0.199 0.801 31 H 0.115 0.885 32 H 0.110 0.890 33 H 0.068 0.932 34 H 0.095 0.905 35 H 0.389 0.611 36 H 0.277 0.723 37 H 0.100 0.900 38 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.327 11.599 6.997 13.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.091 4.091 3 N -0.158 5.158 4 N -0.163 5.163 5 C -0.044 4.044 6 C -0.081 4.081 7 C -0.250 4.250 8 C -0.081 4.081 9 C 0.323 3.677 10 O -0.476 6.476 11 N -0.373 5.373 12 C -0.035 4.035 13 C 0.177 3.823 14 O -0.400 6.400 15 C -0.592 4.592 16 H 0.091 0.909 17 C -0.167 4.167 18 N -0.557 5.557 19 Si 0.794 3.206 20 H -0.202 1.202 21 H -0.208 1.208 22 H -0.191 1.191 23 C -0.019 4.019 24 H 0.117 0.883 25 H 0.092 0.908 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.113 0.887 29 H 0.135 0.865 30 H 0.216 0.784 31 H 0.133 0.867 32 H 0.129 0.871 33 H 0.086 0.914 34 H 0.113 0.887 35 H 0.245 0.755 36 H 0.087 0.913 37 H 0.118 0.882 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.805 14.023 6.329 15.639 hybrid contribution -0.280 -2.140 -0.071 2.160 sum 2.525 11.883 6.258 13.665 Atomic orbital electron populations 1.20210 0.85670 1.03081 1.03901 1.22560 0.97938 0.90291 0.98328 1.77144 0.87698 1.23382 1.27552 1.48640 1.05792 1.05168 1.56719 1.22179 0.82916 0.95063 1.04268 1.22736 0.99698 0.85403 1.00234 1.19555 0.92849 0.94807 1.17787 1.19750 1.04410 0.92235 0.91725 1.20943 0.75888 0.78446 0.92466 1.90616 1.55775 1.53170 1.48044 1.49810 1.64077 1.10653 1.12719 1.23969 1.00868 0.80919 0.97717 1.19814 0.80820 0.90511 0.91200 1.86031 1.26115 1.51387 1.76463 1.21642 1.11366 0.96671 1.29502 0.90920 1.25732 0.96653 1.01057 0.93210 1.69314 1.28438 1.27849 1.30075 0.85440 0.79138 0.77953 0.78089 1.20206 1.20802 1.19123 1.23293 0.99995 0.88478 0.90097 0.88302 0.90819 0.91355 0.90350 0.88680 0.86503 0.78395 0.86681 0.87149 0.91396 0.88691 0.75497 0.91349 0.88182 0.93501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.77 10.22 71.24 0.73 -1.04 16 2 C 0.07 2.32 7.22 43.10 0.31 2.63 16 3 N -0.33 -10.57 12.58 -47.39 -0.60 -11.17 16 4 N -0.38 -9.99 4.01 -369.57 -1.48 -11.47 16 5 C 0.10 1.43 11.47 127.77 1.47 2.90 16 6 C 0.07 1.77 11.40 83.54 0.95 2.72 16 7 C -0.24 -7.29 4.59 -20.14 -0.09 -7.39 16 8 C -0.04 -1.22 5.65 29.10 0.16 -1.05 16 9 C 0.53 21.11 8.07 87.66 0.71 21.82 16 10 O -0.59 -28.04 16.81 -3.04 -0.05 -28.09 16 11 N -0.64 -26.29 3.69 -858.79 -3.17 -29.46 16 12 C 0.09 3.57 7.84 83.18 0.65 4.22 16 13 C 0.22 10.26 1.58 -11.21 -0.02 10.25 16 14 O -0.59 -30.22 13.54 -148.98 -2.02 -32.24 16 15 C -0.55 -27.03 8.70 25.60 0.22 -26.81 16 16 H 0.07 3.44 7.81 -2.91 -0.02 3.41 16 17 C 0.03 1.63 5.39 84.65 0.46 2.09 16 18 N -0.92 -44.94 11.01 21.45 0.24 -44.71 16 19 Si 0.97 38.38 29.54 68.60 2.03 40.41 16 20 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 21 H -0.28 -11.03 7.11 99.48 0.71 -10.32 16 22 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 23 C 0.10 4.57 8.03 83.17 0.67 5.24 16 24 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 25 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 26 H 0.07 1.81 7.96 -2.39 -0.02 1.79 16 27 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 28 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.20 3.94 8.06 -2.91 -0.02 3.92 16 31 H 0.12 2.94 8.10 -2.39 -0.02 2.92 16 32 H 0.11 2.94 8.14 -2.39 -0.02 2.93 16 33 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 34 H 0.10 3.56 8.10 -2.39 -0.02 3.54 16 35 H 0.39 20.19 6.33 -74.06 -0.47 19.72 16 36 H 0.28 12.88 8.31 -92.71 -0.77 12.11 16 37 H 0.10 3.97 8.10 -2.39 -0.02 3.95 16 38 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -66.98 330.56 1.77 -65.22 By element: Atomic # 1 Polarization: 35.34 SS G_CDS: 0.60 Total: 35.94 kcal Atomic # 6 Polarization: 9.36 SS G_CDS: 6.22 Total: 15.57 kcal Atomic # 7 Polarization: -91.80 SS G_CDS: -5.01 Total: -96.81 kcal Atomic # 8 Polarization: -58.26 SS G_CDS: -2.07 Total: -60.33 kcal Atomic # 14 Polarization: 38.38 SS G_CDS: 2.03 Total: 40.41 kcal Total: -66.98 1.77 -65.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001634380443.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.457 kcal (2) G-P(sol) polarization free energy of solvation -66.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds