Wall clock time and date at job start Tue Mar 31 2020 01:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35315 * 126.66869 * 2 1 4 4 C 1.42270 * 103.92085 * 180.02562 * 3 2 1 5 5 C 1.48335 * 126.93773 * 179.88813 * 4 3 2 6 6 O 1.21494 * 119.99697 * 359.70677 * 5 4 3 7 7 N 1.34775 * 120.00029 * 179.70722 * 5 4 3 8 8 C 1.47026 * 125.64611 * 0.02562 * 7 5 4 9 9 C 1.54330 * 107.26840 * 181.02123 * 8 7 5 10 10 C 1.55164 * 102.94081 * 22.19556 * 9 8 7 11 11 H 1.08992 * 111.03715 * 82.58261 * 10 9 8 12 12 C 1.52996 * 111.00141 * 206.42304 * 10 9 8 13 13 N 1.46503 * 109.47284 * 178.64949 * 12 10 9 14 14 C 1.36930 * 120.00033 * 179.97438 * 13 12 10 15 15 H 1.08000 * 120.00117 * 0.02562 * 14 13 12 16 16 C 1.38811 * 119.99846 * 179.97438 * 14 13 12 17 17 N 1.31620 * 120.00114 * 0.02562 * 16 14 13 18 18 Si 1.86808 * 120.00051 * 179.97438 * 16 14 13 19 19 H 1.48490 * 109.46960 * 90.00596 * 18 16 14 20 20 H 1.48505 * 109.46953 * 210.00528 * 18 16 14 21 21 H 1.48499 * 109.46903 * 330.00234 * 18 16 14 22 22 C 1.47422 * 125.64887 * 179.97438 * 7 5 4 23 23 N 1.30986 * 106.12521 * 359.62015 * 4 3 2 24 24 O 1.20904 * 111.43785 * 0.24653 * 23 4 3 25 25 H 1.09001 * 109.47571 * 180.32407 * 1 2 3 26 26 H 1.09000 * 109.47495 * 300.32577 * 1 2 3 27 27 H 1.09002 * 109.47306 * 60.32000 * 1 2 3 28 28 H 1.07997 * 128.03617 * 359.94514 * 3 2 1 29 29 H 1.08998 * 109.88351 * 300.43722 * 8 7 5 30 30 H 1.08998 * 109.88379 * 61.60512 * 8 7 5 31 31 H 1.08999 * 110.71554 * 140.55487 * 9 8 7 32 32 H 1.08995 * 110.72298 * 263.83144 * 9 8 7 33 33 H 1.09003 * 109.46987 * 298.64926 * 12 10 9 34 34 H 1.09004 * 109.47328 * 58.64818 * 12 10 9 35 35 H 0.97002 * 119.99596 * 359.97438 * 13 12 10 36 36 H 0.96997 * 120.00361 * 179.97438 * 17 16 14 37 37 H 1.08996 * 110.36785 * 274.74511 * 22 7 5 38 38 H 1.09004 * 110.36699 * 36.95923 * 22 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3151 1.0854 0.0000 4 6 3.6271 0.5352 -0.0006 5 6 4.9076 1.2840 -0.0032 6 8 4.9009 2.4988 -0.0104 7 7 6.0785 0.6165 0.0025 8 6 6.2312 -0.8458 0.0109 9 6 7.7442 -1.1482 0.0414 10 6 8.3483 0.1588 0.6196 11 1 8.2874 0.1700 1.7078 12 6 9.7925 0.3492 0.1521 13 7 10.3184 1.6063 0.6900 14 6 11.6011 1.9902 0.4035 15 1 12.2251 1.3665 -0.2195 16 6 12.0991 3.1817 0.9127 17 7 11.3385 3.9420 1.6715 18 14 13.8494 3.7052 0.5225 19 1 13.8570 4.5209 -0.7183 20 1 14.3877 4.5108 1.6478 21 1 14.6947 2.4999 0.3278 22 6 7.4182 1.2317 0.0003 23 7 3.4760 -0.7659 0.0074 24 8 2.3072 -1.0750 0.0078 25 1 -0.3634 -1.0276 0.0058 26 1 -0.3634 0.5189 0.8870 27 1 -0.3634 0.5089 -0.8928 28 1 2.0302 2.1271 -0.0008 29 1 5.7517 -1.2635 0.8961 30 1 5.7864 -1.2701 -0.8892 31 1 7.9553 -1.9934 0.6965 32 1 8.1206 -1.3350 -0.9644 33 1 10.4021 -0.4815 0.5079 34 1 9.8208 0.3800 -0.9372 35 1 9.7578 2.1667 1.2492 36 1 11.6866 4.7744 2.0277 37 1 7.7289 1.4604 -1.0191 38 1 7.4214 2.1360 0.6090 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662590704.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:16:42 Heat of formation + Delta-G solvation = 18.597623 kcal Electronic energy + Delta-G solvation = -21241.561403 eV Core-core repulsion = 17893.897693 eV Total energy + Delta-G solvation = -3347.663710 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 3.71 seconds Orbital eigenvalues (eV) -46.18496 -41.25017 -39.02106 -36.52125 -35.24097 -34.53198 -33.76770 -32.06849 -30.14973 -28.70616 -27.76006 -25.91270 -24.57521 -23.79869 -23.06327 -21.46376 -20.37908 -19.14230 -18.96380 -18.36690 -18.08150 -17.44946 -16.73718 -16.57548 -15.94201 -15.35622 -15.15294 -15.01789 -14.78771 -14.50101 -14.17733 -14.01944 -13.94225 -13.63323 -13.35856 -13.14388 -13.06379 -12.76229 -12.44790 -12.24397 -12.18976 -11.92694 -11.72526 -11.66884 -11.58638 -11.55446 -10.95918 -10.40682 -9.93563 -9.02125 -7.95815 -5.25601 -0.02563 0.62338 1.46343 1.48742 1.53276 1.57129 1.89765 2.04745 2.54970 2.71256 3.30138 3.38346 3.52192 3.56281 3.80115 3.89295 4.02864 4.15511 4.19029 4.31615 4.37671 4.49886 4.59015 4.73980 4.77833 4.78961 4.79216 4.86146 4.93257 4.98428 5.08670 5.16125 5.26008 5.35114 5.48963 6.17300 6.25624 6.66414 6.99406 7.31693 8.07110 8.29132 9.27944 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.040433 B = 0.003169 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.337379 B = 8833.535377 C = 9396.305518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.008 4.008 3 C -0.205 4.205 4 C -0.044 4.044 5 C 0.598 3.402 6 O -0.567 6.567 7 N -0.604 5.604 8 C 0.108 3.892 9 C -0.110 4.110 10 C -0.096 4.096 11 H 0.079 0.921 12 C 0.165 3.835 13 N -0.749 5.749 14 C -0.244 4.244 15 H 0.081 0.919 16 C -0.080 4.080 17 N -0.972 5.972 18 Si 0.976 3.024 19 H -0.288 1.288 20 H -0.296 1.296 21 H -0.265 1.265 22 C 0.120 3.880 23 N -0.337 5.337 24 O 0.129 5.871 25 H 0.104 0.896 26 H 0.110 0.890 27 H 0.111 0.889 28 H 0.188 0.812 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.112 0.888 32 H 0.093 0.907 33 H 0.038 0.962 34 H 0.028 0.972 35 H 0.372 0.628 36 H 0.251 0.749 37 H 0.067 0.933 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.765 -14.785 -4.315 28.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.071 4.071 3 C -0.228 4.228 4 C -0.201 4.201 5 C 0.386 3.614 6 O -0.445 6.445 7 N -0.337 5.337 8 C -0.013 4.013 9 C -0.148 4.148 10 C -0.115 4.115 11 H 0.097 0.903 12 C 0.038 3.962 13 N -0.392 5.392 14 C -0.376 4.376 15 H 0.099 0.901 16 C -0.272 4.272 17 N -0.623 5.623 18 Si 0.805 3.195 19 H -0.215 1.215 20 H -0.223 1.223 21 H -0.190 1.190 22 C -0.002 4.002 23 N -0.037 5.037 24 O 0.051 5.949 25 H 0.122 0.878 26 H 0.128 0.872 27 H 0.129 0.871 28 H 0.205 0.795 29 H 0.097 0.903 30 H 0.101 0.899 31 H 0.131 0.869 32 H 0.112 0.888 33 H 0.056 0.944 34 H 0.046 0.954 35 H 0.203 0.797 36 H 0.059 0.941 37 H 0.085 0.915 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -22.721 -15.150 -4.400 27.661 hybrid contribution 0.722 1.962 0.199 2.100 sum -21.999 -13.189 -4.201 25.991 Atomic orbital electron populations 1.20686 0.79554 1.06677 1.06045 1.25228 0.98070 0.83699 1.00123 1.22647 0.88895 1.02910 1.08381 1.23229 0.96152 0.90885 1.09850 1.16976 0.81876 0.85734 0.76862 1.90790 1.87015 1.14190 1.52516 1.48516 1.05070 1.09562 1.70527 1.22281 0.98122 0.77816 1.03131 1.22703 0.91692 0.96807 1.03618 1.22425 0.93720 0.95030 1.00343 0.90270 1.20758 0.91058 0.88143 0.96208 1.42633 1.12938 1.22791 1.60813 1.19670 0.90548 1.02895 1.24466 0.90149 1.25638 1.02517 0.98022 1.00987 1.69837 1.37830 1.14668 1.39996 0.85100 0.79757 0.78048 0.76615 1.21546 1.22319 1.19003 1.22204 0.80314 0.96793 1.00906 1.74244 0.98092 1.14834 1.16557 1.84759 1.10847 1.34124 1.65172 0.87758 0.87178 0.87097 0.79500 0.90304 0.89899 0.86939 0.88813 0.94398 0.95383 0.79669 0.94076 0.91502 0.93060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.22 10.44 71.24 0.74 0.52 16 2 C -0.01 -0.11 7.47 25.01 0.19 0.07 16 3 C -0.21 -4.25 10.92 22.60 0.25 -4.00 16 4 C -0.04 -1.21 7.03 42.96 0.30 -0.91 16 5 C 0.60 21.05 7.88 86.93 0.68 21.73 16 6 O -0.57 -24.18 17.21 -3.70 -0.06 -24.24 16 7 N -0.60 -19.67 3.33 -814.62 -2.71 -22.38 16 8 C 0.11 2.63 5.56 86.73 0.48 3.11 16 9 C -0.11 -2.47 6.42 31.79 0.20 -2.26 16 10 C -0.10 -3.07 3.11 -9.40 -0.03 -3.10 16 11 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 12 C 0.16 6.40 5.71 86.38 0.49 6.89 16 13 N -0.75 -38.78 5.45 -343.45 -1.87 -40.66 16 14 C -0.24 -13.83 9.99 84.03 0.84 -12.99 16 15 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 16 C -0.08 -4.70 5.50 84.86 0.47 -4.23 16 17 N -0.97 -61.68 13.06 21.65 0.28 -61.40 16 18 Si 0.98 47.10 29.55 68.60 2.03 49.13 16 19 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 20 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 21 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 22 C 0.12 4.39 6.08 86.86 0.53 4.92 16 23 N -0.34 -8.04 9.73 -49.52 -0.48 -8.52 16 24 O 0.13 2.35 11.18 71.85 0.80 3.15 16 25 H 0.10 0.00 8.14 -2.39 -0.02 -0.02 16 26 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 27 H 0.11 0.05 8.14 -2.39 -0.02 0.03 16 28 H 0.19 3.44 8.06 -2.91 -0.02 3.41 16 29 H 0.08 1.82 7.68 -2.39 -0.02 1.81 16 30 H 0.08 1.84 7.80 -2.39 -0.02 1.83 16 31 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.09 1.90 8.04 -2.39 -0.02 1.88 16 33 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.03 1.08 8.10 -2.39 -0.02 1.06 16 35 H 0.37 20.88 7.53 -92.71 -0.70 20.18 16 36 H 0.25 15.41 8.31 -92.71 -0.77 14.64 16 37 H 0.07 2.53 8.00 -2.39 -0.02 2.51 16 38 H 0.05 2.22 8.04 -2.38 -0.02 2.20 16 Total: -1.00 -76.81 325.17 3.51 -73.30 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: 0.38 Total: 21.87 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: 5.15 Total: 9.75 kcal Atomic # 7 Polarization: -128.17 SS G_CDS: -4.78 Total: -132.95 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: 0.74 Total: -21.10 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Total: -76.81 3.51 -73.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662590704.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.902 kcal (2) G-P(sol) polarization free energy of solvation -76.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.71 seconds