Wall clock time and date at job start Tue Mar 31 2020 02:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30256 * 125.61842 * 2 1 4 4 C 1.34477 * 108.69897 * 179.77603 * 3 2 1 5 5 C 1.34334 * 107.66948 * 0.39561 * 4 3 2 6 6 C 1.50696 * 126.44173 * 179.87274 * 5 4 3 7 7 C 1.50698 * 109.47212 * 89.71427 * 6 5 4 8 8 O 1.21280 * 120.00018 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00238 * 180.02562 * 7 6 5 10 10 C 1.46507 * 120.00154 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47338 * 179.97438 * 10 9 7 12 12 H 1.08996 * 112.77506 * 56.27308 * 11 10 9 13 13 C 1.53756 * 113.55250 * 187.13463 * 11 10 9 14 14 C 1.53492 * 83.25530 * 140.98868 * 13 11 10 15 15 N 1.47060 * 87.98955 * 333.76204 * 14 13 11 16 16 C 1.36943 * 136.06025 * 207.08609 * 15 14 13 17 17 H 1.08002 * 119.99788 * 179.97438 * 16 15 14 18 18 C 1.38811 * 119.99622 * 0.27775 * 16 15 14 19 19 N 1.31614 * 120.00467 * 359.72375 * 18 16 15 20 20 Si 1.86801 * 119.99700 * 179.72266 * 18 16 15 21 21 H 1.48501 * 109.46896 * 89.99850 * 20 18 16 22 22 H 1.48499 * 109.47039 * 210.00011 * 20 18 16 23 23 H 1.48501 * 109.47275 * 329.99811 * 20 18 16 24 24 O 1.33974 * 125.61916 * 180.02562 * 2 1 3 25 25 H 1.08997 * 109.47049 * 269.97365 * 1 2 3 26 26 H 1.08993 * 109.47377 * 29.97565 * 1 2 3 27 27 H 1.09009 * 109.47140 * 149.97519 * 1 2 3 28 28 H 1.08007 * 126.16541 * 180.26744 * 4 3 2 29 29 H 1.09004 * 109.47314 * 329.71154 * 6 5 4 30 30 H 1.09005 * 109.47242 * 209.71097 * 6 5 4 31 31 H 0.97003 * 120.00379 * 359.97438 * 9 7 6 32 32 H 1.09003 * 109.46849 * 59.99253 * 10 9 7 33 33 H 1.08995 * 109.46754 * 299.99884 * 10 9 7 34 34 H 1.08993 * 114.39365 * 27.42642 * 13 11 10 35 35 H 1.09006 * 114.26383 * 254.54044 * 13 11 10 36 36 H 1.09004 * 113.46349 * 218.98046 * 14 13 11 37 37 H 1.09006 * 113.52425 * 88.55450 * 14 13 11 38 38 H 0.96995 * 120.00147 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6675 0.0050 5 6 3.5698 -0.6757 -0.0007 6 6 4.7937 -1.5549 -0.0009 7 6 5.2016 -1.8483 1.4198 8 8 4.5618 -1.3884 2.3418 9 7 6.2781 -2.6210 1.6660 10 6 6.6743 -2.9067 3.0472 11 6 7.9170 -3.7992 3.0471 12 1 8.7475 -3.3661 2.4897 13 6 8.3134 -4.3006 4.4455 14 6 8.6279 -5.6004 3.6921 15 7 7.6345 -5.1965 2.6858 16 6 6.8125 -5.8387 1.7985 17 1 6.1602 -5.2666 1.1554 18 6 6.8133 -7.2251 1.7300 19 7 7.6080 -7.9223 2.5141 20 14 5.6865 -8.1013 0.5251 21 1 6.3921 -8.2848 -0.7686 22 1 5.3089 -9.4279 1.0755 23 1 4.4628 -7.2879 0.3105 24 8 2.2873 -1.0891 -0.0005 25 1 -0.3633 -0.0005 1.0276 26 1 -0.3634 0.8901 -0.5134 27 1 -0.3634 -0.8898 -0.5143 28 1 4.4157 1.3162 0.0103 29 1 5.6081 -1.0439 -0.5146 30 1 4.5696 -2.4896 -0.5149 31 1 6.7901 -2.9886 0.9287 32 1 5.8599 -3.4182 3.5604 33 1 6.8977 -1.9722 3.5618 34 1 7.4832 -4.3804 5.1472 35 1 9.1882 -3.8057 4.8675 36 1 8.3483 -6.4992 4.2418 37 1 9.6458 -5.6432 3.3045 38 1 7.6088 -8.8911 2.4660 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670651081.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:04 Heat of formation + Delta-G solvation = 41.771595 kcal Electronic energy + Delta-G solvation = -21367.532031 eV Core-core repulsion = 18020.873219 eV Total energy + Delta-G solvation = -3346.658811 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.33684 -39.49165 -38.11908 -34.75160 -34.13760 -33.20267 -32.26872 -30.69049 -28.14448 -27.73605 -25.74843 -23.52589 -22.57018 -21.99031 -21.17237 -20.26586 -19.27100 -17.48963 -17.02609 -16.69902 -16.15202 -15.82634 -15.53438 -14.92594 -14.41277 -14.14859 -13.97936 -13.75015 -13.37715 -13.27518 -13.01773 -12.96710 -12.65443 -12.30442 -11.81637 -11.56795 -11.26962 -11.17010 -11.03178 -10.81093 -10.63377 -10.58228 -10.07346 -9.88475 -9.78635 -9.30286 -8.86826 -8.68544 -8.64625 -6.95931 -5.82636 -3.15609 1.39231 2.54252 2.66154 2.81189 3.33059 3.38365 3.40802 3.53315 3.99341 4.37641 4.55881 4.90971 4.92108 4.97673 5.16411 5.17994 5.19029 5.33972 5.34789 5.43297 5.51558 5.66745 5.79534 5.86244 5.98310 6.04793 6.27389 6.29822 6.35540 6.55041 6.65677 6.80260 7.17021 7.33959 7.52299 7.69256 7.77628 7.91610 8.43537 8.96562 9.64316 10.57000 11.34483 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.018676 B = 0.004298 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.879429 B = 6513.178740 C = 7639.325184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.185 3.815 3 N -0.486 5.486 4 C -0.029 4.029 5 C -0.019 4.019 6 C -0.060 4.060 7 C 0.510 3.490 8 O -0.542 6.542 9 N -0.710 5.710 10 C 0.122 3.878 11 C 0.127 3.873 12 H 0.049 0.951 13 C -0.161 4.161 14 C 0.151 3.849 15 N -0.602 5.602 16 C -0.217 4.217 17 H 0.080 0.920 18 C -0.006 4.006 19 N -0.917 5.917 20 Si 0.908 3.092 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.281 1.281 24 O -0.195 6.195 25 H 0.092 0.908 26 H 0.099 0.901 27 H 0.087 0.913 28 H 0.182 0.818 29 H 0.126 0.874 30 H 0.115 0.885 31 H 0.405 0.595 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.025 0.975 38 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.557 13.637 -5.000 15.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.021 4.021 3 N -0.216 5.216 4 C -0.168 4.168 5 C -0.073 4.073 6 C -0.100 4.100 7 C 0.295 3.705 8 O -0.420 6.420 9 N -0.360 5.360 10 C -0.002 4.002 11 C 0.019 3.981 12 H 0.066 0.934 13 C -0.200 4.200 14 C 0.025 3.975 15 N -0.327 5.327 16 C -0.344 4.344 17 H 0.098 0.902 18 C -0.203 4.203 19 N -0.564 5.564 20 Si 0.738 3.262 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.207 1.207 24 O -0.082 6.082 25 H 0.111 0.889 26 H 0.118 0.882 27 H 0.106 0.894 28 H 0.199 0.801 29 H 0.144 0.856 30 H 0.133 0.867 31 H 0.239 0.761 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.043 0.957 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.428 14.206 -4.491 16.227 hybrid contribution 0.180 -1.487 -1.078 1.846 sum -6.248 12.719 -5.569 15.226 Atomic orbital electron populations 1.20233 0.81465 1.04877 1.04713 1.26216 0.96419 0.78707 1.00767 1.70396 1.02065 1.30321 1.18784 1.22929 0.95073 0.92713 1.06062 1.22519 0.83173 0.94771 1.06798 1.20103 0.92108 1.00891 0.96900 1.20212 0.80812 0.79095 0.90364 1.90718 1.53168 1.52064 1.46046 1.45913 1.29449 1.50444 1.10239 1.21828 0.98436 0.98284 0.81690 1.22468 0.93463 0.87759 0.94368 0.93380 1.23701 1.00422 1.00183 0.95679 1.22030 0.91664 0.95255 0.88519 1.45701 1.43463 0.99403 1.44180 1.18834 1.13784 0.88879 1.12877 0.90231 1.24776 0.99632 0.96093 0.99792 1.69820 1.40442 1.05613 1.40503 0.86186 0.80105 0.79402 0.80471 1.21579 1.21573 1.20661 1.84372 1.16555 1.37696 1.69578 0.88944 0.88246 0.89417 0.80107 0.85580 0.86665 0.76074 0.91081 0.92185 0.90205 0.92323 0.90977 0.95713 0.93624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.45 10.51 36.01 0.38 -0.07 16 2 C 0.19 2.49 8.34 -12.95 -0.11 2.38 16 3 N -0.49 -7.16 11.29 -11.10 -0.13 -7.29 16 4 C -0.03 -0.40 11.80 -17.77 -0.21 -0.61 16 5 C -0.02 -0.27 5.88 -35.69 -0.21 -0.48 16 6 C -0.06 -0.72 6.25 -29.04 -0.18 -0.90 16 7 C 0.51 8.20 7.82 -10.99 -0.09 8.11 16 8 O -0.54 -10.95 16.03 5.56 0.09 -10.86 16 9 N -0.71 -11.27 5.33 -60.29 -0.32 -11.59 16 10 C 0.12 2.14 5.53 -4.04 -0.02 2.12 16 11 C 0.13 2.36 4.11 -72.28 -0.30 2.06 16 12 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 13 C -0.16 -2.86 8.04 -26.08 -0.21 -3.07 16 14 C 0.15 3.38 7.39 -8.53 -0.06 3.32 16 15 N -0.60 -14.25 3.65 -176.87 -0.65 -14.90 16 16 C -0.22 -5.65 10.55 -15.06 -0.16 -5.81 16 17 H 0.08 1.97 7.51 -52.49 -0.39 1.57 16 18 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 19 N -0.92 -26.51 11.51 55.49 0.64 -25.87 16 20 Si 0.91 21.53 29.55 -169.99 -5.02 16.51 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 O -0.20 -2.98 10.78 5.36 0.06 -2.92 16 25 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.09 0.56 8.14 -51.92 -0.42 0.14 16 28 H 0.18 1.98 8.06 -52.48 -0.42 1.56 16 29 H 0.13 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.12 1.26 8.14 -51.93 -0.42 0.83 16 31 H 0.40 5.87 8.38 -40.82 -0.34 5.53 16 32 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.08 1.43 8.13 -51.93 -0.42 1.01 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 1.82 7.12 -51.93 -0.37 1.45 16 37 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 330.12 15.07 4.97 4.97 Total: -1.00 -34.78 330.12 -6.93 -41.71 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -5.31 Total: 3.44 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: -1.26 Total: 6.79 kcal Atomic # 7 Polarization: -59.19 SS G_CDS: -0.45 Total: -59.64 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: 0.15 Total: -13.78 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -34.78 -6.93 -41.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670651081.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.483 kcal (2) G-P(sol) polarization free energy of solvation -34.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds