Wall clock time and date at job start Tue Mar 31 2020 02:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30256 * 125.61842 * 2 1 4 4 C 1.34477 * 108.69897 * 179.77603 * 3 2 1 5 5 C 1.34334 * 107.66948 * 0.39561 * 4 3 2 6 6 C 1.50696 * 126.44173 * 179.87274 * 5 4 3 7 7 C 1.50698 * 109.47212 * 89.71427 * 6 5 4 8 8 O 1.21280 * 120.00018 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00238 * 180.02562 * 7 6 5 10 10 C 1.46507 * 120.00154 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47338 * 179.97438 * 10 9 7 12 12 H 1.08996 * 112.77506 * 56.27308 * 11 10 9 13 13 C 1.53756 * 113.55250 * 187.13463 * 11 10 9 14 14 C 1.53492 * 83.25530 * 140.98868 * 13 11 10 15 15 N 1.47060 * 87.98955 * 333.76204 * 14 13 11 16 16 C 1.36943 * 136.06025 * 207.08609 * 15 14 13 17 17 H 1.08002 * 119.99788 * 179.97438 * 16 15 14 18 18 C 1.38811 * 119.99622 * 0.27775 * 16 15 14 19 19 N 1.31614 * 120.00467 * 359.72375 * 18 16 15 20 20 Si 1.86801 * 119.99700 * 179.72266 * 18 16 15 21 21 H 1.48501 * 109.46896 * 89.99850 * 20 18 16 22 22 H 1.48499 * 109.47039 * 210.00011 * 20 18 16 23 23 H 1.48501 * 109.47275 * 329.99811 * 20 18 16 24 24 O 1.33974 * 125.61916 * 180.02562 * 2 1 3 25 25 H 1.08997 * 109.47049 * 269.97365 * 1 2 3 26 26 H 1.08993 * 109.47377 * 29.97565 * 1 2 3 27 27 H 1.09009 * 109.47140 * 149.97519 * 1 2 3 28 28 H 1.08007 * 126.16541 * 180.26744 * 4 3 2 29 29 H 1.09004 * 109.47314 * 329.71154 * 6 5 4 30 30 H 1.09005 * 109.47242 * 209.71097 * 6 5 4 31 31 H 0.97003 * 120.00379 * 359.97438 * 9 7 6 32 32 H 1.09003 * 109.46849 * 59.99253 * 10 9 7 33 33 H 1.08995 * 109.46754 * 299.99884 * 10 9 7 34 34 H 1.08993 * 114.39365 * 27.42642 * 13 11 10 35 35 H 1.09006 * 114.26383 * 254.54044 * 13 11 10 36 36 H 1.09004 * 113.46349 * 218.98046 * 14 13 11 37 37 H 1.09006 * 113.52425 * 88.55450 * 14 13 11 38 38 H 0.96995 * 120.00147 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6675 0.0050 5 6 3.5698 -0.6757 -0.0007 6 6 4.7937 -1.5549 -0.0009 7 6 5.2016 -1.8483 1.4198 8 8 4.5618 -1.3884 2.3418 9 7 6.2781 -2.6210 1.6660 10 6 6.6743 -2.9067 3.0472 11 6 7.9170 -3.7992 3.0471 12 1 8.7475 -3.3661 2.4897 13 6 8.3134 -4.3006 4.4455 14 6 8.6279 -5.6004 3.6921 15 7 7.6345 -5.1965 2.6858 16 6 6.8125 -5.8387 1.7985 17 1 6.1602 -5.2666 1.1554 18 6 6.8133 -7.2251 1.7300 19 7 7.6080 -7.9223 2.5141 20 14 5.6865 -8.1013 0.5251 21 1 6.3921 -8.2848 -0.7686 22 1 5.3089 -9.4279 1.0755 23 1 4.4628 -7.2879 0.3105 24 8 2.2873 -1.0891 -0.0005 25 1 -0.3633 -0.0005 1.0276 26 1 -0.3634 0.8901 -0.5134 27 1 -0.3634 -0.8898 -0.5143 28 1 4.4157 1.3162 0.0103 29 1 5.6081 -1.0439 -0.5146 30 1 4.5696 -2.4896 -0.5149 31 1 6.7901 -2.9886 0.9287 32 1 5.8599 -3.4182 3.5604 33 1 6.8977 -1.9722 3.5618 34 1 7.4832 -4.3804 5.1472 35 1 9.1882 -3.8057 4.8675 36 1 8.3483 -6.4992 4.2418 37 1 9.6458 -5.6432 3.3045 38 1 7.6088 -8.8911 2.4660 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670651081.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:04 Heat of formation + Delta-G solvation = 14.784597 kcal Electronic energy + Delta-G solvation = -21368.702275 eV Core-core repulsion = 18020.873219 eV Total energy + Delta-G solvation = -3347.829055 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.34802 -40.85100 -39.70781 -35.78994 -35.54117 -34.27970 -34.11973 -31.57812 -29.94893 -29.15301 -26.78460 -25.38626 -23.82620 -23.26317 -22.25728 -21.53681 -20.92264 -18.90703 -18.20010 -18.05229 -17.34457 -17.15233 -17.04613 -16.43162 -15.84018 -15.43390 -15.26644 -15.12230 -14.75501 -14.48751 -14.03425 -13.84595 -13.71695 -13.41695 -13.28649 -13.03621 -12.95981 -12.67112 -12.56509 -12.35024 -12.31000 -11.84850 -11.63308 -11.61872 -11.29726 -10.90567 -10.80394 -10.04150 -9.67836 -8.88351 -7.86512 -5.18208 0.37791 1.44944 1.46761 1.53898 1.56479 1.58361 1.70159 2.32078 2.48688 3.14466 3.36026 3.44374 3.58966 3.84730 3.97161 4.03015 4.12985 4.17192 4.35749 4.36555 4.60214 4.62090 4.65992 4.67085 4.70446 4.88556 5.00837 5.01783 5.06399 5.11199 5.33964 5.37837 5.43858 5.59825 5.75093 5.97932 6.53328 6.68908 6.94287 7.20077 7.65552 8.65070 9.31298 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.018676 B = 0.004298 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.879429 B = 6513.178740 C = 7639.325184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.181 3.819 3 N -0.514 5.514 4 C -0.036 4.036 5 C -0.041 4.041 6 C -0.049 4.049 7 C 0.510 3.490 8 O -0.588 6.588 9 N -0.706 5.706 10 C 0.131 3.869 11 C 0.136 3.864 12 H 0.075 0.925 13 C -0.137 4.137 14 C 0.142 3.858 15 N -0.629 5.629 16 C -0.207 4.207 17 H 0.091 0.909 18 C -0.072 4.072 19 N -0.955 5.955 20 Si 0.968 3.032 21 H -0.283 1.283 22 H -0.302 1.302 23 H -0.271 1.271 24 O -0.217 6.217 25 H 0.102 0.898 26 H 0.117 0.883 27 H 0.105 0.895 28 H 0.204 0.796 29 H 0.170 0.830 30 H 0.129 0.871 31 H 0.413 0.587 32 H 0.037 0.963 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.099 0.901 36 H 0.033 0.967 37 H 0.024 0.976 38 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.705 15.426 -6.144 17.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.025 4.025 3 N -0.245 5.245 4 C -0.174 4.174 5 C -0.094 4.094 6 C -0.089 4.089 7 C 0.297 3.703 8 O -0.469 6.469 9 N -0.357 5.357 10 C 0.006 3.994 11 C 0.029 3.971 12 H 0.092 0.908 13 C -0.175 4.175 14 C 0.016 3.984 15 N -0.356 5.356 16 C -0.335 4.335 17 H 0.109 0.891 18 C -0.264 4.264 19 N -0.605 5.605 20 Si 0.797 3.203 21 H -0.210 1.210 22 H -0.229 1.229 23 H -0.196 1.196 24 O -0.105 6.105 25 H 0.121 0.879 26 H 0.135 0.865 27 H 0.124 0.876 28 H 0.221 0.779 29 H 0.188 0.812 30 H 0.147 0.853 31 H 0.249 0.751 32 H 0.056 0.944 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.118 0.882 36 H 0.052 0.948 37 H 0.042 0.958 38 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -6.560 16.038 -5.660 18.229 hybrid contribution 0.216 -1.945 -0.675 2.070 sum -6.343 14.093 -6.335 16.703 Atomic orbital electron populations 1.20529 0.78309 1.06633 1.05858 1.27285 0.98109 0.78083 0.99045 1.70420 1.02771 1.31098 1.20176 1.23388 0.95590 0.93147 1.05286 1.22933 0.83456 0.95374 1.07656 1.20206 0.92598 1.01856 0.94226 1.20877 0.79864 0.77922 0.91665 1.90700 1.54482 1.53797 1.47906 1.45866 1.29689 1.50307 1.09796 1.21583 0.96687 0.98472 0.82695 1.22607 0.94340 0.85519 0.94605 0.90818 1.23528 1.01746 0.97039 0.95221 1.22042 0.91305 0.96040 0.88992 1.46020 1.43476 1.02144 1.43919 1.19249 1.13200 0.89117 1.11975 0.89125 1.25537 1.01690 0.97206 1.01999 1.70009 1.42712 1.05030 1.42703 0.85228 0.78773 0.77693 0.78595 1.21023 1.22923 1.19642 1.84373 1.17332 1.38701 1.70052 0.87912 0.86501 0.87620 0.77923 0.81233 0.85347 0.75065 0.94444 0.90285 0.90565 0.88222 0.94808 0.95830 0.94655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.81 10.51 71.24 0.75 -0.06 16 2 C 0.18 4.66 8.34 88.34 0.74 5.39 16 3 N -0.51 -14.64 11.29 -303.81 -3.43 -18.08 16 4 C -0.04 -0.95 11.80 83.40 0.98 0.04 16 5 C -0.04 -1.11 5.88 24.79 0.15 -0.97 16 6 C -0.05 -1.05 6.25 29.10 0.18 -0.87 16 7 C 0.51 15.43 7.82 87.66 0.69 16.11 16 8 O -0.59 -23.29 16.03 -3.03 -0.05 -23.34 16 9 N -0.71 -20.80 5.33 -463.06 -2.47 -23.27 16 10 C 0.13 4.34 5.53 86.38 0.48 4.81 16 11 C 0.14 4.70 4.11 41.87 0.17 4.87 16 12 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 13 C -0.14 -4.57 8.04 31.01 0.25 -4.32 16 14 C 0.14 6.34 7.39 83.17 0.61 6.95 16 15 N -0.63 -29.37 3.65 -713.51 -2.60 -31.98 16 16 C -0.21 -10.70 10.55 84.03 0.89 -9.81 16 17 H 0.09 4.35 7.51 -2.91 -0.02 4.32 16 18 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 19 N -0.95 -56.69 11.51 21.65 0.25 -56.44 16 20 Si 0.97 44.63 29.55 68.60 2.03 46.66 16 21 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 22 H -0.30 -14.41 7.11 99.48 0.71 -13.71 16 23 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 24 O -0.22 -6.40 10.78 -3.75 -0.04 -6.44 16 25 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 28 H 0.20 4.03 8.06 -2.91 -0.02 4.01 16 29 H 0.17 2.05 8.14 -2.38 -0.02 2.03 16 30 H 0.13 2.43 8.14 -2.38 -0.02 2.41 16 31 H 0.41 10.79 8.38 -92.71 -0.78 10.02 16 32 H 0.04 1.50 8.14 -2.39 -0.02 1.49 16 33 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.08 2.62 8.13 -2.39 -0.02 2.60 16 35 H 0.10 2.57 8.14 -2.38 -0.02 2.55 16 36 H 0.03 1.75 7.12 -2.38 -0.02 1.73 16 37 H 0.02 1.06 8.14 -2.38 -0.02 1.04 16 38 H 0.24 14.29 8.31 -92.71 -0.77 13.52 16 Total: -1.00 -77.48 330.12 0.33 -77.15 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: 0.30 Total: 17.07 kcal Atomic # 6 Polarization: 12.32 SS G_CDS: 6.35 Total: 18.67 kcal Atomic # 7 Polarization: -121.51 SS G_CDS: -8.25 Total: -129.76 kcal Atomic # 8 Polarization: -29.69 SS G_CDS: -0.09 Total: -29.78 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -77.48 0.33 -77.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670651081.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.930 kcal (2) G-P(sol) polarization free energy of solvation -77.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds