Wall clock time and date at job start Tue Mar 31 2020 02:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35311 * 128.04114 * 2 1 4 4 O 1.34016 * 106.67097 * 179.97438 * 3 2 1 5 5 N 1.20904 * 111.84345 * 359.71116 * 4 3 2 6 6 C 1.30986 * 111.43896 * 0.47625 * 5 4 3 7 7 C 1.48329 * 126.93414 * 179.80351 * 6 5 4 8 8 O 1.21498 * 120.00043 * 179.68894 * 7 6 5 9 9 N 1.34780 * 120.00387 * 359.68874 * 7 6 5 10 10 C 1.47024 * 125.64634 * 359.95783 * 9 7 6 11 11 C 1.54327 * 107.27131 * 181.09623 * 10 9 7 12 12 C 1.55159 * 102.94078 * 22.19431 * 11 10 9 13 13 H 1.08993 * 111.03527 * 82.58520 * 12 11 10 14 14 C 1.53001 * 111.00458 * 206.42528 * 12 11 10 15 15 N 1.46490 * 109.47264 * 178.64848 * 14 12 11 16 16 C 1.36935 * 120.00121 * 179.97438 * 15 14 12 17 17 H 1.07997 * 120.00139 * 0.02562 * 16 15 14 18 18 C 1.38816 * 120.00401 * 180.02562 * 16 15 14 19 19 N 1.31624 * 119.99569 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00172 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47055 * 180.02562 * 20 18 16 22 22 H 1.48505 * 109.46653 * 299.99639 * 20 18 16 23 23 H 1.48495 * 109.47483 * 60.00002 * 20 18 16 24 24 C 1.47421 * 125.65064 * 180.02562 * 9 7 6 25 25 H 1.09002 * 109.47261 * 270.03187 * 1 2 3 26 26 H 1.08996 * 109.47057 * 30.03446 * 1 2 3 27 27 H 1.09002 * 109.46694 * 150.03009 * 1 2 3 28 28 H 1.08003 * 126.66056 * 359.97438 * 3 2 1 29 29 H 1.08994 * 109.88344 * 300.51347 * 10 9 7 30 30 H 1.09003 * 109.88015 * 61.52758 * 10 9 7 31 31 H 1.08997 * 110.71778 * 263.83268 * 11 10 9 32 32 H 1.08997 * 110.72113 * 140.55626 * 11 10 9 33 33 H 1.09003 * 109.46836 * 58.64556 * 14 12 11 34 34 H 1.08999 * 109.47071 * 298.65595 * 14 12 11 35 35 H 0.97000 * 120.00577 * 0.02562 * 15 14 12 36 36 H 0.97001 * 119.99885 * 359.97438 * 19 18 16 37 37 H 1.09007 * 110.36720 * 36.99771 * 24 9 7 38 38 H 1.08996 * 110.46086 * 274.72597 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.0657 0.0000 4 8 3.5889 0.5773 0.0006 5 7 3.5989 -0.6317 0.0066 6 6 2.3836 -1.1205 0.0007 7 6 1.9992 -2.5531 0.0010 8 8 0.8255 -2.8672 0.0007 9 7 2.9519 -3.5066 0.0016 10 6 4.4027 -3.2682 0.0011 11 6 5.0936 -4.6479 -0.0261 12 6 3.9954 -5.5751 -0.6105 13 1 3.9744 -5.5190 -1.6988 14 6 4.1901 -7.0186 -0.1423 15 7 3.1191 -7.8571 -0.6862 16 6 3.0855 -9.1958 -0.4002 17 1 3.8482 -9.6335 0.2266 18 6 2.0709 -9.9906 -0.9160 19 7 1.1415 -9.4573 -1.6805 20 14 2.0246 -11.8167 -0.5253 21 1 0.8512 -12.4360 -1.1921 22 1 3.2695 -12.4598 -1.0175 23 1 1.9169 -12.0061 0.9436 24 6 2.7118 -4.9611 0.0014 25 1 -0.3634 0.0006 1.0277 26 1 -0.3633 0.8896 -0.5143 27 1 -0.3633 -0.8903 -0.5134 28 1 2.0559 2.1074 -0.0004 29 1 4.6839 -2.6953 -0.8825 30 1 4.6894 -2.7252 0.9016 31 1 5.3676 -4.9619 0.9810 32 1 5.9681 -4.6285 -0.6765 33 1 4.1619 -7.0542 0.9468 34 1 5.1540 -7.3874 -0.4929 35 1 2.4341 -7.4643 -1.2496 36 1 1.1653 -8.5090 -1.8830 37 1 1.8451 -5.2025 -0.6141 38 1 2.5661 -5.3233 1.0191 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690747549.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:57 Heat of formation + Delta-G solvation = 42.297852 kcal Electronic energy + Delta-G solvation = -21499.605592 eV Core-core repulsion = 18152.969601 eV Total energy + Delta-G solvation = -3346.635991 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.35104 -40.03639 -37.78311 -34.96669 -34.92056 -33.01655 -32.02942 -30.35668 -28.72918 -28.40279 -26.05807 -24.19257 -23.11211 -22.21162 -21.82021 -20.27628 -19.87170 -18.06194 -17.97619 -17.17802 -16.80767 -16.32089 -15.50298 -14.78818 -14.64182 -14.18068 -13.82738 -13.65896 -13.60711 -13.46899 -13.26949 -12.93583 -12.69121 -12.68065 -12.22759 -11.87166 -11.58669 -11.06220 -10.86389 -10.70022 -10.59185 -10.50619 -10.40394 -10.22234 -9.95768 -9.73832 -9.15698 -8.88181 -8.69574 -7.00559 -6.08729 -3.09142 0.90856 1.40295 2.64555 2.89402 3.03411 3.53040 3.56979 3.68558 3.74548 4.20773 4.52912 4.60607 4.63504 4.74962 4.82144 4.94208 5.07422 5.28602 5.34947 5.39269 5.45932 5.54980 5.62468 5.63718 5.80199 5.86152 5.89557 5.97439 6.00852 6.13754 6.21439 6.31638 6.59917 6.72555 7.35366 7.69272 7.81226 7.98712 8.77176 9.23480 10.09920 10.24235 11.39632 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.032743 B = 0.003468 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.951582 B = 8071.869037 C = 8796.456871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.150 4.150 3 C -0.070 4.070 4 O 0.120 5.880 5 N -0.327 5.327 6 C -0.022 4.022 7 C 0.606 3.394 8 O -0.519 6.519 9 N -0.603 5.603 10 C 0.106 3.894 11 C -0.125 4.125 12 C -0.107 4.107 13 H 0.084 0.916 14 C 0.171 3.829 15 N -0.745 5.745 16 C -0.334 4.334 17 H 0.065 0.935 18 C -0.045 4.045 19 N -0.942 5.942 20 Si 1.081 2.919 21 H -0.285 1.285 22 H -0.295 1.295 23 H -0.295 1.295 24 C 0.117 3.883 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.223 0.777 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.024 0.976 34 H 0.026 0.974 35 H 0.367 0.633 36 H 0.255 0.745 37 H 0.084 0.916 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.341 23.438 3.911 24.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.155 4.155 3 C -0.151 4.151 4 O 0.045 5.955 5 N -0.028 5.028 6 C -0.181 4.181 7 C 0.392 3.608 8 O -0.394 6.394 9 N -0.337 5.337 10 C -0.017 4.017 11 C -0.163 4.163 12 C -0.127 4.127 13 H 0.103 0.897 14 C 0.043 3.957 15 N -0.390 5.390 16 C -0.465 4.465 17 H 0.083 0.917 18 C -0.242 4.242 19 N -0.587 5.587 20 Si 0.912 3.088 21 H -0.210 1.210 22 H -0.223 1.223 23 H -0.222 1.222 24 C -0.004 4.004 25 H 0.095 0.905 26 H 0.090 0.910 27 H 0.107 0.893 28 H 0.239 0.761 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.041 0.959 34 H 0.044 0.956 35 H 0.200 0.800 36 H 0.066 0.934 37 H 0.102 0.898 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.174 21.162 3.815 22.117 hybrid contribution 0.021 1.880 0.128 1.884 sum 5.195 23.041 3.943 23.946 Atomic orbital electron populations 1.20240 0.86490 1.03999 1.03305 1.21394 0.99214 0.90067 1.04793 1.25765 0.82415 1.01254 1.05628 1.84778 1.29487 1.15413 1.65790 1.74270 1.21563 0.91395 1.15617 1.23442 0.89509 0.97006 1.08126 1.16464 0.84745 0.81848 0.77751 1.90811 1.16861 1.81328 1.50389 1.48405 1.06788 1.07238 1.71226 1.22119 0.79298 0.98056 1.02211 1.22676 0.98133 0.92989 1.02512 1.22619 0.93302 0.96058 1.00697 0.89739 1.20520 0.92500 0.86470 0.96200 1.42374 1.29436 1.06370 1.60854 1.20014 1.11679 0.85205 1.29633 0.91728 1.25802 0.94086 1.05951 0.98409 1.70882 1.35312 1.13531 1.39015 0.83232 0.75692 0.74477 0.75432 1.21013 1.22278 1.22250 1.22392 0.99279 0.76647 1.02106 0.90474 0.90975 0.89304 0.76066 0.91089 0.91108 0.90149 0.89739 0.95861 0.95588 0.79955 0.93381 0.89781 0.90536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 10.01 36.01 0.36 -0.40 16 2 C -0.15 -1.57 6.34 -104.12 -0.66 -2.23 16 3 C -0.07 -0.50 12.24 29.69 0.36 -0.14 16 4 O 0.12 1.15 11.18 17.24 0.19 1.34 16 5 N -0.33 -3.99 9.73 33.29 0.32 -3.67 16 6 C -0.02 -0.29 7.03 -82.53 -0.58 -0.87 16 7 C 0.61 9.97 7.88 -12.11 -0.10 9.87 16 8 O -0.52 -9.89 15.59 5.37 0.08 -9.81 16 9 N -0.60 -9.44 3.33 -171.46 -0.57 -10.01 16 10 C 0.11 1.35 5.56 -3.06 -0.02 1.34 16 11 C -0.12 -1.54 6.42 -24.89 -0.16 -1.70 16 12 C -0.11 -1.73 3.10 -88.48 -0.27 -2.00 16 13 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 14 C 0.17 3.41 5.71 -4.05 -0.02 3.39 16 15 N -0.74 -18.97 5.45 -59.91 -0.33 -19.30 16 16 C -0.33 -9.59 9.99 -15.06 -0.15 -9.74 16 17 H 0.06 1.81 7.83 -52.49 -0.41 1.40 16 18 C -0.04 -1.32 5.50 -17.43 -0.10 -1.42 16 19 N -0.94 -29.73 13.70 55.49 0.76 -28.97 16 20 Si 1.08 26.30 29.92 -169.99 -5.09 21.22 16 21 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.30 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.30 -6.86 7.11 56.52 0.40 -6.46 16 24 C 0.12 2.01 6.08 -2.54 -0.02 2.00 16 25 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.09 1.03 6.89 -51.93 -0.36 0.68 16 28 H 0.22 0.48 8.06 -52.48 -0.42 0.06 16 29 H 0.07 0.88 7.69 -51.93 -0.40 0.48 16 30 H 0.07 0.85 7.78 -51.93 -0.40 0.45 16 31 H 0.08 0.94 8.04 -51.93 -0.42 0.53 16 32 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.02 0.47 8.10 -51.93 -0.42 0.05 16 34 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.37 9.62 6.37 -40.82 -0.26 9.36 16 36 H 0.25 7.95 6.77 -40.82 -0.28 7.68 16 37 H 0.08 1.63 8.04 -51.93 -0.42 1.21 16 38 H 0.08 1.37 8.00 -51.93 -0.42 0.96 16 LS Contribution 320.35 15.07 4.83 4.83 Total: -1.00 -34.90 320.35 -6.25 -41.15 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -5.11 Total: 5.13 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -1.35 Total: -1.91 kcal Atomic # 7 Polarization: -62.13 SS G_CDS: 0.19 Total: -61.94 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.28 Total: -8.47 kcal Atomic # 14 Polarization: 26.30 SS G_CDS: -5.09 Total: 21.22 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -34.90 -6.25 -41.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690747549.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.450 kcal (2) G-P(sol) polarization free energy of solvation -34.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds