Wall clock time and date at job start Tue Mar 31 2020 02:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.34253 * 126.53028 * 2 1 4 4 C 1.34041 * 108.23222 * 179.97438 * 3 2 1 5 5 N 1.29938 * 109.24454 * 359.72844 * 4 3 2 6 6 C 1.36069 * 108.47171 * 0.43867 * 5 4 3 7 7 C 1.47427 * 126.44791 * 179.82239 * 6 5 4 8 8 O 1.21598 * 119.99980 * 179.69228 * 7 6 5 9 9 N 1.34781 * 119.99724 * 359.69406 * 7 6 5 10 10 C 1.47425 * 125.64680 * 4.79257 * 9 7 6 11 11 C 1.54915 * 104.83002 * 204.15088 * 10 9 7 12 12 C 1.55162 * 101.57948 * 322.99307 * 11 10 9 13 13 C 1.47019 * 125.64601 * 184.82066 * 9 7 6 14 14 H 1.08997 * 110.01128 * 59.42857 * 13 9 7 15 15 C 1.52995 * 109.88114 * 298.33493 * 13 9 7 16 16 N 1.46506 * 109.47033 * 178.06005 * 15 13 9 17 17 C 1.36936 * 119.99873 * 174.92916 * 16 15 13 18 18 H 1.08007 * 120.00157 * 359.97438 * 17 16 15 19 19 C 1.38814 * 119.99867 * 180.02562 * 17 16 15 20 20 N 1.31617 * 119.99985 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99854 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47150 * 179.97438 * 21 19 17 23 23 H 1.48497 * 109.47120 * 299.99757 * 21 19 17 24 24 H 1.48500 * 109.47418 * 59.99997 * 21 19 17 25 25 H 1.09004 * 109.47069 * 270.01682 * 1 2 3 26 26 H 1.08998 * 109.47250 * 30.01942 * 1 2 3 27 27 H 1.09001 * 109.47445 * 150.02066 * 1 2 3 28 28 H 1.08006 * 125.37945 * 180.02562 * 4 3 2 29 29 H 1.09002 * 110.36599 * 85.31381 * 10 9 7 30 30 H 1.09002 * 110.46365 * 323.03632 * 10 9 7 31 31 H 1.08996 * 111.00517 * 204.91994 * 11 10 9 32 32 H 1.08992 * 111.00423 * 81.06579 * 11 10 9 33 33 H 1.09001 * 110.72267 * 277.13783 * 12 11 10 34 34 H 1.08998 * 110.71521 * 153.86595 * 12 11 10 35 35 H 1.09001 * 109.47494 * 58.06253 * 15 13 9 36 36 H 1.09005 * 109.47417 * 298.05964 * 15 13 9 37 37 H 0.96997 * 120.00209 * 354.92932 * 16 15 13 38 38 H 0.96993 * 120.00014 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0788 0.0000 4 6 3.5787 0.6579 0.0006 5 7 3.6002 -0.6412 0.0067 6 6 2.3169 -1.0937 0.0005 7 6 1.8852 -2.5033 0.0005 8 8 0.7003 -2.7762 0.0001 9 7 2.8040 -3.4894 0.0010 10 6 4.2631 -3.3042 0.1017 11 6 4.8696 -4.5731 -0.5481 12 6 3.8715 -5.6673 -0.0855 13 6 2.5170 -4.9279 -0.0993 14 1 1.9889 -5.1389 -1.0291 15 6 1.6687 -5.3736 1.0934 16 7 1.3493 -6.7972 0.9606 17 6 0.6835 -7.4462 1.9660 18 1 0.3942 -6.9086 2.8570 19 6 0.3814 -8.7952 1.8404 20 7 0.7344 -9.4504 0.7548 21 14 -0.5274 -9.6803 3.2115 22 1 -0.7275 -11.1028 2.8351 23 1 0.2698 -9.6062 4.4622 24 1 -1.8477 -9.0355 3.4271 25 1 -0.3633 0.0003 1.0277 26 1 -0.3634 0.8898 -0.5141 27 1 -0.3634 -0.8902 -0.5135 28 1 4.4489 1.2977 0.0011 29 1 4.5651 -3.2317 1.1465 30 1 4.5727 -2.4133 -0.4447 31 1 5.8702 -4.7690 -0.1630 32 1 4.8804 -4.4884 -1.6347 33 1 4.1137 -6.0097 0.9206 34 1 3.8624 -6.5020 -0.7864 35 1 0.7453 -4.7949 1.1190 36 1 2.2253 -5.2106 2.0163 37 1 1.6094 -7.2801 0.1606 38 1 0.5229 -10.3929 0.6669 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699746552.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:07:49 Heat of formation + Delta-G solvation = 9.554250 kcal Electronic energy + Delta-G solvation = -21902.883680 eV Core-core repulsion = 18554.827820 eV Total energy + Delta-G solvation = -3348.055860 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.61490 -39.83777 -37.33474 -35.10224 -34.33698 -32.53933 -31.54992 -31.20204 -28.68495 -27.49362 -25.06756 -24.29876 -22.79130 -22.09304 -21.84639 -20.41972 -19.31631 -17.67545 -17.09221 -16.91453 -16.41293 -16.01983 -15.16209 -14.71488 -14.39733 -14.25919 -13.80001 -13.51686 -13.24988 -13.20097 -13.11768 -12.77333 -12.53120 -12.46331 -12.09425 -11.59748 -11.35836 -11.28349 -10.87120 -10.77748 -10.54747 -10.38525 -10.33774 -10.01903 -9.86601 -9.61231 -9.10420 -8.76788 -8.32095 -6.82672 -5.68696 -2.96485 0.97382 1.91917 2.36989 3.07258 3.37343 3.50123 3.53806 3.55533 3.85349 4.47133 4.55766 4.68322 4.82625 4.99252 5.06356 5.19892 5.26379 5.32362 5.55026 5.60002 5.65149 5.66721 5.76656 5.88403 5.93035 6.05950 6.08247 6.18312 6.23713 6.29580 6.52308 6.65025 6.89455 7.09160 7.26152 7.72651 7.78211 8.29905 8.50548 9.61226 10.18405 10.54432 11.54440 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.024766 B = 0.004189 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.298539 B = 6682.085385 C = 7503.439574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.041 3.959 3 O -0.202 6.202 4 C 0.167 3.833 5 N -0.459 5.459 6 C -0.068 4.068 7 C 0.609 3.391 8 O -0.525 6.525 9 N -0.594 5.594 10 C 0.100 3.900 11 C -0.137 4.137 12 C -0.120 4.120 13 C 0.131 3.869 14 H 0.076 0.924 15 C 0.145 3.855 16 N -0.728 5.728 17 C -0.233 4.233 18 H 0.069 0.931 19 C -0.015 4.015 20 N -0.935 5.935 21 Si 0.907 3.093 22 H -0.291 1.291 23 H -0.287 1.287 24 H -0.286 1.286 25 H 0.093 0.907 26 H 0.079 0.921 27 H 0.114 0.886 28 H 0.253 0.747 29 H 0.064 0.936 30 H 0.099 0.901 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.035 0.965 36 H 0.020 0.980 37 H 0.383 0.617 38 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.754 21.681 -4.045 23.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.015 4.015 3 O -0.089 6.089 4 C -0.061 4.061 5 N -0.189 5.189 6 C -0.188 4.188 7 C 0.397 3.603 8 O -0.402 6.402 9 N -0.327 5.327 10 C -0.023 4.023 11 C -0.175 4.175 12 C -0.158 4.158 13 C 0.028 3.972 14 H 0.095 0.905 15 C 0.017 3.983 16 N -0.373 5.373 17 C -0.365 4.365 18 H 0.086 0.914 19 C -0.210 4.210 20 N -0.585 5.585 21 Si 0.739 3.261 22 H -0.217 1.217 23 H -0.214 1.214 24 H -0.213 1.213 25 H 0.111 0.889 26 H 0.098 0.902 27 H 0.133 0.867 28 H 0.269 0.731 29 H 0.082 0.918 30 H 0.117 0.883 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.053 0.947 36 H 0.038 0.962 37 H 0.217 0.783 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.515 21.189 -3.884 23.163 hybrid contribution -0.641 -0.181 0.559 0.870 sum 7.873 21.007 -3.325 22.679 Atomic orbital electron populations 1.20623 0.82476 1.05439 1.04861 1.23762 0.95227 0.83219 0.99281 1.84360 1.18583 1.36351 1.69558 1.28042 0.85282 0.91454 1.01334 1.70814 1.21796 1.09705 1.16547 1.21517 0.88639 0.95578 1.13030 1.16309 0.84803 0.81855 0.77365 1.90825 1.15718 1.82664 1.50963 1.48225 1.07206 1.06233 1.71002 1.22551 0.79177 0.99424 1.01121 1.22841 0.99092 0.94894 1.00679 1.22661 0.92526 0.97241 1.03346 1.21865 0.96953 0.77947 1.00402 0.90550 1.20982 0.96388 0.87314 0.93602 1.42199 1.69267 1.04111 1.21730 1.19176 1.28264 0.92017 0.97021 0.91351 1.24705 1.01920 0.96640 0.97755 1.69645 1.52390 1.09190 1.27228 0.86257 0.79750 0.78727 0.81413 1.21711 1.21354 1.21306 0.88890 0.90244 0.86720 0.73113 0.91798 0.88262 0.90120 0.91045 0.89872 0.89825 0.94685 0.96212 0.78331 0.93554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 9.88 36.00 0.36 -0.41 16 2 C 0.04 0.49 7.44 -35.08 -0.26 0.23 16 3 O -0.20 -2.00 10.73 6.54 0.07 -1.93 16 4 C 0.17 1.38 13.19 51.96 0.69 2.07 16 5 N -0.46 -5.47 8.36 -11.48 -0.10 -5.56 16 6 C -0.07 -0.96 6.82 -83.02 -0.57 -1.53 16 7 C 0.61 10.54 7.66 -12.52 -0.10 10.44 16 8 O -0.52 -10.41 13.63 5.28 0.07 -10.34 16 9 N -0.59 -9.88 3.06 -164.27 -0.50 -10.39 16 10 C 0.10 1.34 6.30 -2.53 -0.02 1.32 16 11 C -0.14 -1.67 7.09 -24.58 -0.17 -1.85 16 12 C -0.12 -1.90 6.08 -24.89 -0.15 -2.05 16 13 C 0.13 2.43 2.98 -66.96 -0.20 2.23 16 14 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 15 C 0.15 3.31 5.62 -4.04 -0.02 3.28 16 16 N -0.73 -19.48 5.37 -59.90 -0.32 -19.80 16 17 C -0.23 -6.86 9.99 -15.06 -0.15 -7.01 16 18 H 0.07 1.97 7.83 -52.48 -0.41 1.56 16 19 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 20 N -0.94 -28.88 13.06 55.49 0.72 -28.16 16 21 Si 0.91 23.12 29.55 -169.99 -5.02 18.10 16 22 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.11 1.35 6.48 -51.93 -0.34 1.02 16 28 H 0.25 0.67 8.06 -52.48 -0.42 0.25 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.10 1.24 5.88 -51.93 -0.31 0.94 16 31 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.08 1.42 7.82 -51.93 -0.41 1.02 16 34 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.04 0.88 6.64 -51.93 -0.34 0.53 16 36 H 0.02 0.46 8.09 -51.93 -0.42 0.04 16 37 H 0.38 10.52 7.51 -40.82 -0.31 10.21 16 38 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 317.24 15.07 4.78 4.78 Total: -1.00 -35.03 317.24 -6.04 -41.07 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -5.05 Total: 6.02 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: -0.69 Total: 6.21 kcal Atomic # 7 Polarization: -63.71 SS G_CDS: -0.20 Total: -63.91 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: 0.14 Total: -12.27 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -5.02 Total: 18.10 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -35.03 -6.04 -41.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699746552.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.625 kcal (2) G-P(sol) polarization free energy of solvation -35.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds