Wall clock time and date at job start Tue Mar 31 2020 02:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.41260 * 128.07747 * 2 1 4 4 N 1.30135 * 106.58945 * 180.24888 * 3 2 1 5 5 O 1.20881 * 111.98203 * 359.76241 * 4 3 2 6 6 C 1.34644 * 111.47172 * 0.02562 * 5 4 3 7 7 C 1.47511 * 126.94976 * 179.97438 * 6 5 4 8 8 O 1.21581 * 120.00314 * 180.02562 * 7 6 5 9 9 N 1.34774 * 119.99706 * 0.02562 * 7 6 5 10 10 C 1.46499 * 120.00133 * 179.97438 * 9 7 6 11 11 H 1.09003 * 112.84469 * 336.19957 * 10 9 7 12 12 C 1.54049 * 113.61109 * 107.50629 * 10 9 7 13 13 C 1.53786 * 86.98426 * 89.11993 * 12 10 9 14 14 H 1.09002 * 113.61357 * 270.83585 * 13 12 10 15 15 C 1.53003 * 113.61503 * 140.01654 * 13 12 10 16 16 N 1.46504 * 109.46983 * 85.86203 * 15 13 12 17 17 C 1.36936 * 119.99949 * 179.97438 * 16 15 13 18 18 H 1.08000 * 119.99878 * 0.02562 * 17 16 15 19 19 C 1.38811 * 120.00016 * 180.02562 * 17 16 15 20 20 N 1.31629 * 119.99833 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00155 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47333 * 89.99737 * 21 19 17 23 23 H 1.48505 * 109.46813 * 210.00014 * 21 19 17 24 24 H 1.48502 * 109.46862 * 329.99828 * 21 19 17 25 25 C 1.53781 * 87.17350 * 25.42668 * 13 12 10 26 26 H 1.08993 * 109.47260 * 270.14091 * 1 2 3 27 27 H 1.09005 * 109.46864 * 30.14097 * 1 2 3 28 28 H 1.09002 * 109.47271 * 150.13311 * 1 2 3 29 29 H 1.07997 * 126.70822 * 0.02562 * 3 2 1 30 30 H 0.96999 * 120.00152 * 0.02562 * 9 7 6 31 31 H 1.08992 * 113.69868 * 334.60103 * 12 10 9 32 32 H 1.09000 * 113.61076 * 203.61862 * 12 10 9 33 33 H 1.09000 * 109.47107 * 205.86243 * 15 13 12 34 34 H 1.08997 * 109.47112 * 325.86394 * 15 13 12 35 35 H 0.96999 * 119.99647 * 0.02562 * 16 15 13 36 36 H 0.96996 * 119.99458 * 180.02562 * 20 19 17 37 37 H 1.08999 * 113.61567 * 89.07405 * 25 13 12 38 38 H 1.09000 * 113.61379 * 219.89528 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3781 1.1120 0.0000 4 7 3.5890 0.6353 -0.0054 5 8 3.5995 -0.5735 -0.0040 6 6 2.3508 -1.0771 0.0022 7 6 1.9694 -2.5021 0.0050 8 8 0.7951 -2.8172 0.0103 9 7 2.9227 -3.4548 0.0018 10 6 2.5441 -4.8700 0.0052 11 1 1.5487 -5.0407 0.4153 12 6 2.7887 -5.5774 -1.3412 13 6 4.2008 -5.8980 -0.8236 14 1 4.9356 -5.1262 -1.0528 15 6 4.6826 -7.3038 -1.1880 16 7 5.2898 -7.2817 -2.5211 17 6 5.7963 -8.4333 -3.0619 18 1 5.7478 -9.3578 -2.5058 19 6 6.3721 -8.4122 -4.3248 20 7 6.4316 -7.2852 -5.0022 21 14 7.0625 -9.9833 -5.0628 22 1 5.9988 -10.6782 -5.8314 23 1 8.1908 -9.6502 -5.9691 24 1 7.5467 -10.8702 -3.9747 25 6 3.6211 -5.7944 0.5970 26 1 -0.3633 0.0025 1.0276 27 1 -0.3633 0.8888 -0.5161 28 1 -0.3634 -0.8912 -0.5118 29 1 2.0947 2.1541 0.0004 30 1 3.8596 -3.2034 -0.0020 31 1 2.7801 -4.9036 -2.1979 32 1 2.1671 -6.4604 -1.4896 33 1 5.4209 -7.6354 -0.4579 34 1 3.8358 -7.9900 -1.1858 35 1 5.3336 -6.4512 -3.0203 36 1 6.8336 -7.2707 -5.8848 37 1 3.2267 -6.7367 0.9774 38 1 4.2849 -5.2970 1.3042 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700642391.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:16 Heat of formation + Delta-G solvation = 33.214976 kcal Electronic energy + Delta-G solvation = -21006.635406 eV Core-core repulsion = 17659.605552 eV Total energy + Delta-G solvation = -3347.029854 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -46.07771 -41.32508 -39.54714 -36.40482 -35.81113 -34.61691 -33.36285 -32.66302 -29.47743 -28.43562 -26.61747 -25.74640 -24.81742 -23.58320 -22.79297 -21.82200 -20.33560 -19.73016 -19.05632 -18.85597 -17.23092 -16.89433 -16.69166 -16.11003 -16.05357 -15.63169 -15.41901 -15.07707 -14.76985 -14.45182 -14.22433 -14.14392 -13.70534 -13.61078 -13.37505 -13.11955 -12.91904 -12.70301 -12.31091 -12.17339 -11.92441 -11.77521 -11.46331 -11.39527 -11.35935 -11.14459 -10.85122 -10.60499 -10.12480 -8.96705 -7.94244 -5.22438 -0.33128 1.04439 1.47341 1.47826 1.49204 1.57622 1.81884 2.12080 2.56851 3.16940 3.38892 3.52684 3.57759 3.60530 3.69205 3.92689 3.95439 3.96861 4.29490 4.35361 4.55954 4.74753 4.76199 4.79281 4.84375 4.87985 4.92026 4.94094 5.00651 5.16130 5.23493 5.29220 5.33983 5.49524 5.63372 6.22345 6.28710 6.83679 6.99293 7.34481 8.13156 8.34859 9.29451 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.027770 B = 0.003080 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.056799 B = 9089.685265 C = 9552.011141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.118 4.118 3 C -0.002 4.002 4 N -0.365 5.365 5 O 0.104 5.896 6 C -0.111 4.111 7 C 0.610 3.390 8 O -0.536 6.536 9 N -0.688 5.688 10 C 0.126 3.874 11 H 0.109 0.891 12 C -0.141 4.141 13 C -0.117 4.117 14 H 0.083 0.917 15 C 0.160 3.840 16 N -0.746 5.746 17 C -0.244 4.244 18 H 0.076 0.924 19 C -0.079 4.079 20 N -0.971 5.971 21 Si 0.973 3.027 22 H -0.287 1.287 23 H -0.296 1.296 24 H -0.268 1.268 25 C -0.115 4.115 26 H 0.092 0.908 27 H 0.101 0.899 28 H 0.071 0.929 29 H 0.235 0.765 30 H 0.416 0.584 31 H 0.051 0.949 32 H 0.091 0.909 33 H 0.021 0.979 34 H 0.023 0.977 35 H 0.372 0.628 36 H 0.250 0.750 37 H 0.113 0.887 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.842 15.490 14.977 24.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.123 4.123 3 C -0.180 4.180 4 N -0.067 5.067 5 O 0.033 5.967 6 C -0.176 4.176 7 C 0.395 3.605 8 O -0.414 6.414 9 N -0.338 5.338 10 C 0.022 3.978 11 H 0.127 0.873 12 C -0.180 4.180 13 C -0.135 4.135 14 H 0.101 0.899 15 C 0.034 3.966 16 N -0.389 5.389 17 C -0.376 4.376 18 H 0.094 0.906 19 C -0.271 4.271 20 N -0.622 5.622 21 Si 0.802 3.198 22 H -0.215 1.215 23 H -0.222 1.222 24 H -0.193 1.193 25 C -0.154 4.154 26 H 0.110 0.890 27 H 0.120 0.880 28 H 0.090 0.910 29 H 0.252 0.748 30 H 0.253 0.747 31 H 0.070 0.930 32 H 0.110 0.890 33 H 0.039 0.961 34 H 0.041 0.959 35 H 0.204 0.796 36 H 0.059 0.941 37 H 0.131 0.869 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.415 15.604 15.006 24.474 hybrid contribution 0.411 -0.487 -1.146 1.311 sum -11.004 15.117 13.860 23.275 Atomic orbital electron populations 1.20409 0.84872 1.04643 1.04238 1.22058 1.00067 0.90053 1.00088 1.25617 0.86570 1.03544 1.02255 1.73771 1.24502 0.91256 1.17145 1.84957 1.28191 1.15725 1.67809 1.24004 0.85294 0.96132 1.12180 1.16558 0.85466 0.81948 0.76571 1.90825 1.18040 1.81043 1.51482 1.45569 1.10031 1.05652 1.72521 1.21963 1.00263 0.78604 0.97018 0.87264 1.23472 0.97058 1.00495 0.96992 1.22732 0.96366 0.96798 0.97630 0.89917 1.20834 0.94791 0.95255 0.85750 1.42602 1.71023 1.08497 1.16756 1.19671 1.29519 0.89651 0.98776 0.90632 1.25583 1.03214 1.00128 0.98133 1.69826 1.52066 1.26850 1.13454 0.85138 0.77360 0.79152 0.78118 1.21453 1.22243 1.19316 1.23240 0.96633 1.00183 0.95299 0.89005 0.88015 0.90975 0.74823 0.74746 0.92999 0.89019 0.96121 0.95865 0.79603 0.94092 0.86913 0.89021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.14 9.95 71.23 0.71 -0.43 16 2 C -0.12 -2.10 6.37 -19.45 -0.12 -2.22 16 3 C 0.00 -0.04 12.14 85.69 1.04 1.01 16 4 N -0.37 -7.91 12.04 -58.55 -0.71 -8.61 16 5 O 0.10 2.32 11.04 65.81 0.73 3.05 16 6 C -0.11 -2.40 7.29 24.39 0.18 -2.22 16 7 C 0.61 14.58 7.82 86.69 0.68 15.25 16 8 O -0.54 -15.12 14.71 -3.97 -0.06 -15.17 16 9 N -0.69 -14.74 5.26 -442.80 -2.33 -17.07 16 10 C 0.13 2.80 4.33 45.61 0.20 3.00 16 11 H 0.11 2.41 7.46 -2.39 -0.02 2.39 16 12 C -0.14 -3.98 7.45 31.21 0.23 -3.75 16 13 C -0.12 -3.40 3.62 -10.26 -0.04 -3.44 16 14 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 15 C 0.16 6.15 6.08 86.38 0.53 6.67 16 16 N -0.75 -38.13 5.60 -343.44 -1.92 -40.05 16 17 C -0.24 -13.78 9.99 84.03 0.84 -12.94 16 18 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 19 C -0.08 -4.57 5.50 84.86 0.47 -4.11 16 20 N -0.97 -60.28 13.06 21.65 0.28 -59.99 16 21 Si 0.97 46.56 29.55 68.60 2.03 48.58 16 22 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 23 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 24 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 25 C -0.12 -2.34 7.39 31.12 0.23 -2.11 16 26 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 28 H 0.07 1.30 6.73 -2.39 -0.02 1.28 16 29 H 0.24 1.60 8.06 -2.91 -0.02 1.58 16 30 H 0.42 7.79 8.53 -92.71 -0.79 7.00 16 31 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.09 2.61 7.92 -2.39 -0.02 2.59 16 33 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.02 0.89 7.88 -2.39 -0.02 0.87 16 35 H 0.37 20.34 7.67 -92.71 -0.71 19.63 16 36 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 37 H 0.11 2.03 8.10 -2.39 -0.02 2.01 16 38 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -70.87 327.87 2.55 -68.32 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: -0.41 Total: 26.25 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: 4.94 Total: -5.30 kcal Atomic # 7 Polarization: -121.05 SS G_CDS: -4.68 Total: -125.73 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.67 Total: -12.12 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.58 kcal Total: -70.87 2.55 -68.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700642391.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.530 kcal (2) G-P(sol) polarization free energy of solvation -70.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds