Wall clock time and date at job start Tue Mar 31 2020 01:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.41269 * 126.70411 * 2 1 4 4 C 1.36821 * 103.84509 * 180.12742 * 3 2 1 5 5 C 1.47520 * 126.93878 * 179.90887 * 4 3 2 6 6 O 1.21575 * 119.99954 * 359.70115 * 5 4 3 7 7 N 1.34776 * 119.99792 * 179.70787 * 5 4 3 8 8 C 1.47026 * 125.64607 * 359.97212 * 7 5 4 9 9 C 1.54330 * 107.26840 * 181.09447 * 8 7 5 10 10 C 1.55164 * 102.94081 * 22.19556 * 9 8 7 11 11 H 1.08992 * 111.03715 * 82.58261 * 10 9 8 12 12 C 1.52996 * 111.00141 * 206.42304 * 10 9 8 13 13 N 1.46503 * 109.47284 * 178.64949 * 12 10 9 14 14 C 1.36930 * 120.00033 * 179.97438 * 13 12 10 15 15 H 1.08000 * 120.00117 * 0.02562 * 14 13 12 16 16 C 1.38811 * 119.99846 * 179.97438 * 14 13 12 17 17 N 1.31621 * 120.00028 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 120.00199 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47234 * 89.99014 * 18 16 14 20 20 H 1.48496 * 109.47035 * 209.99602 * 18 16 14 21 21 H 1.48502 * 109.46505 * 329.99406 * 18 16 14 22 22 C 1.47422 * 125.64892 * 180.02562 * 7 5 4 23 23 O 1.34639 * 106.11513 * 359.64330 * 4 3 2 24 24 N 1.20882 * 111.46968 * 0.24198 * 23 4 3 25 25 H 1.09004 * 109.47121 * 270.25533 * 1 2 3 26 26 H 1.08995 * 109.47443 * 30.25884 * 1 2 3 27 27 H 1.08997 * 109.46973 * 150.26040 * 1 2 3 28 28 H 1.08001 * 128.07217 * 0.02562 * 3 2 1 29 29 H 1.08998 * 109.88351 * 300.51046 * 8 7 5 30 30 H 1.08998 * 109.88379 * 61.67836 * 8 7 5 31 31 H 1.08999 * 110.71554 * 140.55487 * 9 8 7 32 32 H 1.08995 * 110.72298 * 263.83144 * 9 8 7 33 33 H 1.09003 * 109.46987 * 298.64926 * 12 10 9 34 34 H 1.09004 * 109.47328 * 58.64818 * 12 10 9 35 35 H 0.97002 * 119.99596 * 359.97438 * 13 12 10 36 36 H 0.96997 * 119.99781 * 180.02562 * 17 16 14 37 37 H 1.08996 * 110.36785 * 274.67188 * 22 7 5 38 38 H 1.09004 * 110.36699 * 36.88600 * 22 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3513 1.1326 0.0000 4 6 3.6120 0.6011 -0.0030 5 6 4.8870 1.3432 -0.0061 6 8 4.8827 2.5589 -0.0118 7 7 6.0565 0.6734 -0.0029 8 6 6.2063 -0.7892 0.0044 9 6 7.7188 -1.0947 0.0339 10 6 8.3257 0.2107 0.6128 11 1 8.2654 0.2212 1.7010 12 6 9.7701 0.3985 0.1447 13 7 10.2987 1.6542 0.6833 14 6 11.5821 2.0358 0.3964 15 1 12.2045 1.4113 -0.2273 16 6 12.0827 3.2259 0.9063 17 7 13.3165 3.5925 0.6310 18 14 11.0059 4.3064 1.9844 19 1 11.1768 3.9138 3.4064 20 1 11.4010 5.7275 1.8123 21 1 9.5839 4.1368 1.5916 22 6 7.3975 1.2860 -0.0049 23 8 3.4539 -0.7360 0.0036 24 7 2.2848 -1.0432 0.0051 25 1 -0.3633 0.0046 1.0277 26 1 -0.3634 0.8876 -0.5178 27 1 -0.3633 -0.8923 -0.5098 28 1 2.0677 2.1747 0.0004 29 1 5.7264 -1.2066 0.8896 30 1 5.7602 -1.2120 -0.8958 31 1 7.9285 -1.9408 0.6883 32 1 8.0942 -1.2815 -0.9721 33 1 10.3782 -0.4336 0.4996 34 1 9.7979 0.4301 -0.9445 35 1 9.7395 2.2153 1.2431 36 1 13.6664 4.4238 0.9876 37 1 7.7083 1.5151 -1.0242 38 1 7.4027 2.1896 0.6047 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714338386.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:41 Heat of formation + Delta-G solvation = 21.050051 kcal Electronic energy + Delta-G solvation = -21384.579946 eV Core-core repulsion = 18037.022581 eV Total energy + Delta-G solvation = -3347.557365 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 3.48 seconds Orbital eigenvalues (eV) -46.10965 -41.24037 -39.06134 -36.66219 -35.92594 -34.17668 -33.23696 -32.25185 -30.22844 -29.62646 -27.73328 -25.56692 -24.26626 -23.73880 -22.95863 -21.55738 -20.66010 -19.68336 -18.96387 -18.79236 -17.52465 -17.47882 -16.72677 -16.56815 -15.96379 -15.63328 -14.97659 -14.88026 -14.69487 -14.33706 -14.24980 -14.13714 -14.05068 -13.73811 -13.64282 -13.48935 -13.09824 -12.81333 -12.44795 -12.20286 -12.00740 -11.92839 -11.77936 -11.61679 -11.58921 -11.16705 -10.98091 -10.89665 -9.89232 -9.28815 -8.02738 -5.35421 -0.37773 0.94897 1.31724 1.37992 1.39958 1.46768 1.75042 1.95007 2.47651 3.03396 3.15974 3.29256 3.43747 3.56302 3.71897 3.82964 3.91880 4.02030 4.25752 4.30812 4.38737 4.49817 4.61914 4.67849 4.70522 4.77882 4.80418 4.82329 4.96918 5.02764 5.11035 5.17478 5.21406 5.40207 5.77193 6.14478 6.21793 6.60609 6.97300 7.08509 7.85297 8.01907 9.18795 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.032813 B = 0.003599 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.105061 B = 7777.464314 C = 8456.624627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.016 3.984 3 C -0.149 4.149 4 C -0.087 4.087 5 C 0.611 3.389 6 O -0.553 6.553 7 N -0.602 5.602 8 C 0.095 3.905 9 C -0.110 4.110 10 C -0.101 4.101 11 H 0.090 0.910 12 C 0.166 3.834 13 N -0.762 5.762 14 C -0.230 4.230 15 H 0.062 0.938 16 C -0.063 4.063 17 N -0.983 5.983 18 Si 0.949 3.051 19 H -0.276 1.276 20 H -0.297 1.297 21 H -0.257 1.257 22 C 0.113 3.887 23 O 0.115 5.885 24 N -0.366 5.366 25 H 0.097 0.903 26 H 0.105 0.895 27 H 0.084 0.916 28 H 0.198 0.802 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.113 0.887 32 H 0.092 0.908 33 H 0.042 0.958 34 H 0.032 0.968 35 H 0.364 0.636 36 H 0.257 0.743 37 H 0.073 0.927 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.489 -12.054 -0.764 30.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.141 4.141 3 C -0.171 4.171 4 C -0.153 4.153 5 C 0.398 3.602 6 O -0.433 6.433 7 N -0.334 5.334 8 C -0.026 4.026 9 C -0.148 4.148 10 C -0.120 4.120 11 H 0.109 0.891 12 C 0.040 3.960 13 N -0.407 5.407 14 C -0.361 4.361 15 H 0.080 0.920 16 C -0.254 4.254 17 N -0.634 5.634 18 Si 0.777 3.223 19 H -0.203 1.203 20 H -0.224 1.224 21 H -0.182 1.182 22 C -0.009 4.009 23 O 0.044 5.956 24 N -0.070 5.070 25 H 0.116 0.884 26 H 0.124 0.876 27 H 0.103 0.897 28 H 0.215 0.785 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.132 0.868 32 H 0.111 0.889 33 H 0.060 0.940 34 H 0.050 0.950 35 H 0.197 0.803 36 H 0.066 0.934 37 H 0.091 0.909 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -27.586 -12.743 -0.872 30.399 hybrid contribution 0.142 1.995 0.553 2.075 sum -27.444 -10.748 -0.320 29.475 Atomic orbital electron populations 1.20419 0.82506 1.05454 1.05022 1.24231 1.00968 0.87316 1.01624 1.23205 0.89444 1.02828 1.01630 1.23905 0.96647 0.84470 1.10250 1.16359 0.81019 0.85402 0.77405 1.90872 1.86288 1.13338 1.52771 1.48503 1.05023 1.09669 1.70169 1.22450 0.98612 0.77610 1.03969 1.22674 0.91625 0.96790 1.03713 1.22503 0.93148 0.95356 1.01039 0.89142 1.20764 0.91339 0.87386 0.96556 1.42791 1.12140 1.24103 1.61691 1.19058 0.89247 1.03276 1.24540 0.91994 1.25451 0.97499 0.99750 1.02727 1.69870 1.16836 1.25163 1.51534 0.85499 0.79415 0.78088 0.79342 1.20254 1.22384 1.18192 1.22336 0.80099 0.96933 1.01563 1.85021 1.21486 1.21620 1.67433 1.73720 0.89586 1.25168 1.18501 0.88442 0.87648 0.89667 0.78462 0.89323 0.89136 0.86832 0.88934 0.94023 0.94979 0.80320 0.93378 0.90909 0.92225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 10.47 71.23 0.75 0.12 16 2 C 0.02 0.27 7.31 43.55 0.32 0.59 16 3 C -0.15 -2.76 10.91 22.68 0.25 -2.51 16 4 C -0.09 -1.95 7.08 24.39 0.17 -1.78 16 5 C 0.61 16.97 7.85 86.69 0.68 17.65 16 6 O -0.55 -19.36 17.17 -3.95 -0.07 -19.43 16 7 N -0.60 -15.05 3.33 -815.59 -2.71 -17.77 16 8 C 0.09 1.64 5.58 86.73 0.48 2.13 16 9 C -0.11 -1.84 6.42 31.79 0.20 -1.64 16 10 C -0.10 -2.57 3.10 -9.40 -0.03 -2.60 16 11 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 12 C 0.17 5.65 5.71 86.38 0.49 6.14 16 13 N -0.76 -34.59 5.26 -343.45 -1.81 -36.40 16 14 C -0.23 -13.00 10.47 84.03 0.88 -12.12 16 15 H 0.06 3.79 8.06 -2.91 -0.02 3.77 16 16 C -0.06 -3.72 5.50 84.86 0.47 -3.25 16 17 N -0.98 -63.35 13.97 21.65 0.30 -63.05 16 18 Si 0.95 46.33 27.74 68.60 1.90 48.23 16 19 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 20 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16 21 H -0.26 -11.59 6.52 99.48 0.65 -10.95 16 22 C 0.11 3.26 6.08 86.85 0.53 3.79 16 23 O 0.12 2.40 9.02 65.86 0.59 2.99 16 24 N -0.37 -7.51 12.04 -48.85 -0.59 -8.10 16 25 H 0.10 0.56 8.14 -2.38 -0.02 0.54 16 26 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.20 2.94 8.06 -2.91 -0.02 2.92 16 29 H 0.09 1.34 7.72 -2.39 -0.02 1.32 16 30 H 0.09 1.34 7.84 -2.39 -0.02 1.33 16 31 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.09 1.44 8.04 -2.39 -0.02 1.42 16 33 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.03 1.11 8.10 -2.39 -0.02 1.09 16 35 H 0.36 16.11 5.39 -92.71 -0.50 15.61 16 36 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 37 H 0.07 2.21 8.00 -2.39 -0.02 2.20 16 38 H 0.06 2.01 8.03 -2.38 -0.02 1.99 16 Total: -1.00 -74.39 322.16 3.33 -71.06 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: 0.51 Total: 15.95 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: 5.19 Total: 6.52 kcal Atomic # 7 Polarization: -120.51 SS G_CDS: -4.80 Total: -125.31 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: 0.53 Total: -16.44 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 1.90 Total: 48.23 kcal Total: -74.39 3.33 -71.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714338386.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.106 kcal (2) G-P(sol) polarization free energy of solvation -74.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.48 seconds