Wall clock time and date at job start Tue Mar 31 2020 02:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.35315 * 128.03687 * 2 1 4 4 O 1.34014 * 106.66580 * 180.26153 * 3 2 1 5 5 N 1.20911 * 111.84914 * 359.72188 * 4 3 2 6 6 C 1.30987 * 111.43767 * 0.02562 * 5 4 3 7 7 C 1.48327 * 126.94109 * 179.97438 * 6 5 4 8 8 O 1.21496 * 120.00346 * 180.02562 * 7 6 5 9 9 N 1.34774 * 119.99581 * 0.29988 * 7 6 5 10 10 C 1.46508 * 119.99638 * 179.72523 * 9 7 6 11 11 C 1.53004 * 109.46773 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.46982 * 179.97438 * 11 10 9 13 13 C 1.36932 * 120.00544 * 270.00313 * 12 11 10 14 14 H 1.07999 * 120.00245 * 144.92317 * 13 12 11 15 15 C 1.38815 * 119.99579 * 324.92318 * 13 12 11 16 16 N 1.31612 * 120.00116 * 337.94216 * 15 13 12 17 17 Si 1.86803 * 119.99631 * 157.93671 * 15 13 12 18 18 H 1.48498 * 109.47248 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47008 * 120.00249 * 17 15 13 20 20 H 1.48502 * 109.47140 * 240.00035 * 17 15 13 21 21 C 1.46503 * 119.99588 * 89.99817 * 12 11 10 22 22 C 1.53000 * 117.49754 * 183.23730 * 21 12 11 23 23 C 1.52998 * 117.49702 * 114.58209 * 21 12 11 24 24 H 1.09001 * 109.46837 * 270.17676 * 1 2 3 25 25 H 1.08999 * 109.47127 * 30.17782 * 1 2 3 26 26 H 1.08997 * 109.46950 * 150.17760 * 1 2 3 27 27 H 1.07994 * 126.66742 * 359.97438 * 3 2 1 28 28 H 0.96993 * 120.00747 * 359.72007 * 9 7 6 29 29 H 1.09002 * 109.46692 * 299.99324 * 10 9 7 30 30 H 1.08997 * 109.46995 * 60.00063 * 10 9 7 31 31 H 1.08994 * 109.47008 * 299.99556 * 11 10 9 32 32 H 1.08997 * 109.47193 * 60.00326 * 11 10 9 33 33 H 0.97000 * 120.00268 * 175.90978 * 16 15 13 34 34 H 1.09003 * 115.55416 * 328.91146 * 21 12 11 35 35 H 1.09001 * 117.50062 * 0.02562 * 22 21 12 36 36 H 1.09003 * 117.49581 * 145.02303 * 22 21 12 37 37 H 1.09000 * 117.50076 * 214.98291 * 23 21 12 38 38 H 1.09003 * 117.49927 * 359.97414 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3409 1.0658 0.0000 4 8 3.5888 0.5774 -0.0059 5 7 3.5989 -0.6316 -0.0038 6 6 2.3838 -1.1206 0.0030 7 6 1.9992 -2.5531 0.0068 8 8 0.8256 -2.8671 0.0127 9 7 2.9519 -3.5064 0.0093 10 6 2.5721 -4.9214 0.0191 11 6 3.8332 -5.7879 0.0194 12 7 3.4535 -7.2028 0.0298 13 6 3.2808 -7.8566 1.2205 14 1 2.5203 -8.6178 1.3133 15 6 4.0834 -7.5411 2.3083 16 7 5.2529 -6.9678 2.1189 17 14 3.5034 -7.9302 4.0408 18 1 2.1639 -8.5685 3.9828 19 1 4.4662 -8.8567 4.6887 20 1 3.4189 -6.6740 4.8283 21 6 3.2584 -7.9181 -1.2337 22 6 2.7890 -9.3723 -1.1570 23 6 4.2308 -9.0534 -1.5602 24 1 -0.3633 0.0032 1.0277 25 1 -0.3633 0.8884 -0.5166 26 1 -0.3633 -0.8916 -0.5111 27 1 2.0560 2.1075 -0.0004 28 1 3.8889 -3.2559 0.0045 29 1 1.9848 -5.1337 0.9125 30 1 1.9787 -5.1445 -0.8675 31 1 4.4201 -5.5754 -0.8742 32 1 4.4270 -5.5649 0.9058 33 1 5.7875 -6.6934 2.8804 34 1 2.8927 -7.3143 -2.0643 35 1 2.6249 -9.7967 -0.1665 36 1 2.1147 -9.7253 -1.9373 37 1 4.5045 -9.1967 -2.6054 38 1 5.0159 -9.2678 -0.8350 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714674150.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:57 Heat of formation + Delta-G solvation = 53.085730 kcal Electronic energy + Delta-G solvation = -21425.155865 eV Core-core repulsion = 18078.987671 eV Total energy + Delta-G solvation = -3346.168194 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -46.16157 -40.76326 -38.88368 -36.51351 -35.68126 -35.10470 -33.50317 -32.59377 -29.73601 -29.00311 -26.68662 -25.38604 -23.42236 -22.91038 -22.65600 -21.75001 -21.54286 -19.46915 -18.86616 -18.24925 -17.57323 -17.29153 -17.08815 -16.46026 -16.28584 -15.69792 -15.51535 -14.74544 -14.54909 -14.47019 -14.22696 -14.08175 -13.81562 -13.34635 -13.33271 -12.99433 -12.66036 -12.54046 -12.38284 -12.16847 -11.96563 -11.73692 -11.43962 -11.40595 -11.37890 -10.94754 -10.54806 -10.40075 -10.22209 -8.62856 -7.88442 -5.52830 0.06255 0.72395 1.39021 1.44165 1.53087 1.81114 2.00310 2.29829 2.45243 2.86060 3.10235 3.36676 3.47555 3.62061 3.89743 4.08555 4.25550 4.28539 4.30682 4.44791 4.49298 4.56490 4.69902 4.78108 4.82780 4.92582 4.94739 4.99894 5.09570 5.20599 5.34255 5.37474 5.52406 5.60568 5.69787 6.26641 6.38944 6.88065 7.06382 7.07711 7.75421 8.25103 9.03964 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.018527 B = 0.004284 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.960168 B = 6533.925708 C = 7112.861876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.173 4.173 3 C -0.034 4.034 4 O 0.136 5.864 5 N -0.351 5.351 6 C -0.059 4.059 7 C 0.588 3.412 8 O -0.556 6.556 9 N -0.701 5.701 10 C 0.121 3.879 11 C 0.143 3.857 12 N -0.564 5.564 13 C -0.262 4.262 14 H 0.063 0.937 15 C -0.033 4.033 16 N -0.910 5.910 17 Si 0.949 3.051 18 H -0.269 1.269 19 H -0.289 1.289 20 H -0.291 1.291 21 C 0.096 3.904 22 C -0.181 4.181 23 C -0.212 4.212 24 H 0.077 0.923 25 H 0.108 0.892 26 H 0.057 0.943 27 H 0.281 0.719 28 H 0.410 0.590 29 H 0.041 0.959 30 H 0.057 0.943 31 H 0.044 0.956 32 H 0.080 0.920 33 H 0.252 0.748 34 H 0.112 0.888 35 H 0.075 0.925 36 H 0.111 0.889 37 H 0.103 0.897 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.764 16.623 -6.385 18.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.178 4.178 3 C -0.114 4.114 4 O 0.057 5.943 5 N -0.049 5.049 6 C -0.217 4.217 7 C 0.373 3.627 8 O -0.434 6.434 9 N -0.352 5.352 10 C -0.005 4.005 11 C 0.016 3.984 12 N -0.281 5.281 13 C -0.392 4.392 14 H 0.081 0.919 15 C -0.230 4.230 16 N -0.553 5.553 17 Si 0.778 3.222 18 H -0.193 1.193 19 H -0.216 1.216 20 H -0.218 1.218 21 C -0.012 4.012 22 C -0.219 4.219 23 C -0.253 4.253 24 H 0.095 0.905 25 H 0.127 0.873 26 H 0.076 0.924 27 H 0.297 0.703 28 H 0.246 0.754 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.097 0.903 33 H 0.062 0.938 34 H 0.129 0.871 35 H 0.094 0.906 36 H 0.130 0.870 37 H 0.122 0.878 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.252 15.688 -6.260 17.689 hybrid contribution -0.268 -0.361 1.178 1.261 sum -5.520 15.327 -5.082 17.065 Atomic orbital electron populations 1.20224 0.85666 1.04147 1.03433 1.21713 1.00063 0.89844 1.06223 1.26728 0.80276 1.02678 1.01699 1.84743 1.30928 1.14161 1.64493 1.74209 1.21568 0.92818 1.16346 1.23456 0.90937 0.96573 1.10687 1.17298 0.85334 0.83471 0.76592 1.90729 1.18499 1.82470 1.51669 1.45897 1.10040 1.06588 1.72656 1.21961 1.00079 0.78127 1.00285 1.20932 0.92912 0.82570 1.02000 1.43409 1.79116 1.04934 1.00681 1.19284 1.11476 1.19816 0.88648 0.91921 1.25721 0.94113 1.01248 1.01967 1.70135 1.09815 1.44995 1.30404 0.85499 0.78243 0.77266 0.81241 1.19309 1.21563 1.21769 1.21559 1.01729 0.88067 0.89843 1.23054 0.97327 0.99357 1.02152 1.23262 0.92836 1.08611 1.00558 0.90455 0.87346 0.92376 0.70332 0.75441 0.94043 0.92470 0.93769 0.90250 0.93832 0.87085 0.90605 0.87041 0.87841 0.92461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.41 10.01 71.24 0.71 -0.70 16 2 C -0.17 -3.70 6.34 -19.53 -0.12 -3.82 16 3 C -0.03 -0.44 12.24 67.14 0.82 0.39 16 4 O 0.14 2.70 11.18 71.89 0.80 3.51 16 5 N -0.35 -9.70 11.84 -49.51 -0.59 -10.29 16 6 C -0.06 -1.77 7.19 42.96 0.31 -1.46 16 7 C 0.59 21.65 7.85 86.93 0.68 22.34 16 8 O -0.56 -23.08 15.34 -3.70 -0.06 -23.14 16 9 N -0.70 -26.03 5.55 -465.48 -2.59 -28.61 16 10 C 0.12 5.08 6.00 86.38 0.52 5.60 16 11 C 0.14 6.54 5.45 86.38 0.47 7.01 16 12 N -0.56 -27.58 2.78 -678.03 -1.88 -29.47 16 13 C -0.26 -14.12 8.63 84.03 0.73 -13.39 16 14 H 0.06 3.40 6.55 -2.91 -0.02 3.38 16 15 C -0.03 -1.80 4.96 84.86 0.42 -1.37 16 16 N -0.91 -51.94 11.33 21.65 0.25 -51.70 16 17 Si 0.95 44.77 29.61 68.60 2.03 46.80 16 18 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 19 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 20 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 21 C 0.10 3.97 6.56 44.99 0.30 4.27 16 22 C -0.18 -6.83 9.80 30.62 0.30 -6.53 16 23 C -0.21 -8.32 10.36 30.62 0.32 -8.00 16 24 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.06 1.42 6.89 -2.39 -0.02 1.40 16 27 H 0.28 -0.02 8.06 -2.91 -0.02 -0.04 16 28 H 0.41 14.15 8.23 -92.71 -0.76 13.39 16 29 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.06 2.35 8.14 -2.39 -0.02 2.34 16 31 H 0.04 1.89 8.07 -2.39 -0.02 1.87 16 32 H 0.08 4.15 5.35 -2.39 -0.01 4.13 16 33 H 0.25 13.95 8.32 -92.71 -0.77 13.18 16 34 H 0.11 4.05 8.14 -2.39 -0.02 4.03 16 35 H 0.08 3.22 6.37 -2.39 -0.02 3.20 16 36 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 37 H 0.10 3.36 8.14 -2.39 -0.02 3.34 16 38 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 Total: -1.00 -69.27 327.32 3.74 -65.53 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: 0.32 Total: 23.05 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: 5.45 Total: 4.32 kcal Atomic # 7 Polarization: -115.25 SS G_CDS: -4.81 Total: -120.06 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: 0.75 Total: -19.63 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -69.27 3.74 -65.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714674150.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.612 kcal (2) G-P(sol) polarization free energy of solvation -69.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds