Wall clock time and date at job start Tue Mar 31 2020 01:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30015 * 127.33279 * 2 1 4 4 O 1.20664 * 112.30538 * 180.02562 * 3 2 1 5 5 C 1.33503 * 113.15067 * 359.76206 * 4 3 2 6 6 C 1.50702 * 126.82572 * 180.30237 * 5 4 3 7 7 C 1.37358 * 106.34030 * 0.38345 * 5 4 3 8 8 C 1.47399 * 128.56136 * 179.91759 * 7 5 4 9 9 O 1.21617 * 119.99753 * 269.67423 * 8 7 5 10 10 N 1.34773 * 120.00449 * 89.67898 * 8 7 5 11 11 C 1.46500 * 120.00008 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.46948 * 174.94227 * 11 10 8 13 13 N 1.46506 * 115.54704 * 80.38791 * 12 11 10 14 14 C 1.36934 * 120.00067 * 65.28106 * 13 12 11 15 15 H 1.08007 * 119.99798 * 354.95821 * 14 13 12 16 16 C 1.38809 * 120.00329 * 174.68472 * 14 13 12 17 17 N 1.31619 * 119.99782 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00203 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47020 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47189 * 119.99900 * 18 16 14 21 21 H 1.48500 * 109.46795 * 239.99729 * 18 16 14 22 22 C 1.52995 * 117.49872 * 226.05876 * 12 11 10 23 23 C 1.53002 * 117.49982 * 294.71995 * 12 11 10 24 24 H 1.09008 * 109.46969 * 269.99256 * 1 2 3 25 25 H 1.08992 * 109.47472 * 29.99740 * 1 2 3 26 26 H 1.09000 * 109.47025 * 150.00509 * 1 2 3 27 27 H 1.09003 * 109.46678 * 270.09609 * 6 5 4 28 28 H 1.08992 * 109.47080 * 30.10086 * 6 5 4 29 29 H 1.09005 * 109.46753 * 150.10216 * 6 5 4 30 30 H 0.97001 * 119.99786 * 359.97438 * 10 8 7 31 31 H 1.08994 * 109.47255 * 54.94194 * 11 10 8 32 32 H 1.08999 * 109.46673 * 294.93754 * 11 10 8 33 33 H 0.97005 * 119.99862 * 245.27277 * 13 12 11 34 34 H 0.96999 * 120.00217 * 180.02562 * 17 16 14 35 35 H 1.09007 * 117.49708 * 215.00165 * 22 12 11 36 36 H 1.08997 * 117.50058 * 0.02877 * 22 12 11 37 37 H 1.09000 * 117.49687 * 359.97438 * 23 12 11 38 38 H 1.09001 * 117.49460 * 144.97141 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2954 1.0338 0.0000 4 8 3.4608 0.7209 -0.0005 5 6 3.6494 -0.6007 0.0042 6 6 4.9713 -1.3244 0.0114 7 6 2.3992 -1.1695 -0.0007 8 6 2.0402 -2.5991 -0.0003 9 8 1.8911 -3.1890 -1.0533 10 7 1.8770 -3.2527 1.1671 11 6 1.5207 -4.6737 1.1674 12 6 1.5209 -5.1991 2.6044 13 7 0.3188 -4.9001 3.3866 14 6 -0.8853 -5.4434 3.0262 15 1 -0.9654 -6.0256 2.1200 16 6 -2.0017 -5.2507 3.8282 17 7 -1.9028 -4.5461 4.9355 18 14 -3.6445 -5.9912 3.3361 19 1 -3.4907 -6.7319 2.0582 20 1 -4.1050 -6.9231 4.3965 21 1 -4.6440 -4.9068 3.1619 22 6 2.2222 -6.5330 2.8688 23 6 2.8585 -5.2254 3.3468 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3634 0.8899 -0.5137 26 1 -0.3633 -0.8900 -0.5138 27 1 5.2946 -1.5005 -1.0146 28 1 5.7149 -0.7176 0.5277 29 1 4.8601 -2.2789 0.5261 30 1 1.9962 -2.7823 2.0070 31 1 2.2479 -5.2307 0.5768 32 1 0.5283 -4.7994 0.7347 33 1 0.3759 -4.3173 4.1600 34 1 -2.6828 -4.4117 5.4963 35 1 1.7892 -7.1881 3.6248 36 1 2.6838 -7.0360 2.0191 37 1 3.7384 -4.8687 2.8114 38 1 2.8441 -5.0198 4.4172 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723490575.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:31:34 Heat of formation + Delta-G solvation = 55.985121 kcal Electronic energy + Delta-G solvation = -21718.396014 eV Core-core repulsion = 18372.353548 eV Total energy + Delta-G solvation = -3346.042467 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.89812 -39.44074 -37.54263 -34.56803 -33.88228 -33.57845 -33.05202 -29.76521 -28.83388 -28.37983 -26.75250 -24.05841 -23.81703 -21.94928 -20.70344 -19.93549 -19.26060 -17.87072 -17.72126 -17.14934 -16.31994 -15.83264 -15.39068 -14.83653 -14.37078 -13.97097 -13.89594 -13.60268 -13.42348 -13.24134 -13.14596 -13.13721 -12.80813 -12.51232 -12.18868 -11.99307 -11.14695 -11.05880 -11.02503 -10.93433 -10.43541 -10.26183 -10.10505 -9.88453 -9.76184 -9.44050 -9.39592 -8.93790 -8.76707 -7.12976 -5.88826 -3.19844 1.24475 1.89302 2.52821 2.80344 3.37225 3.40576 3.44647 3.46021 4.09148 4.19506 4.37924 4.54848 4.83376 4.87309 5.11616 5.14201 5.16917 5.22623 5.31931 5.42155 5.50190 5.51009 5.56319 5.63047 5.73202 5.73544 6.02484 6.04759 6.14136 6.36754 6.48294 6.57110 6.65967 6.74187 7.64736 7.69871 8.17588 8.28994 8.32389 9.40606 9.93259 10.28437 11.33050 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.017569 B = 0.004918 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.357927 B = 5691.966220 C = 6558.342922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.060 3.940 3 N -0.360 5.360 4 O 0.093 5.907 5 C 0.012 3.988 6 C -0.076 4.076 7 C -0.245 4.245 8 C 0.594 3.406 9 O -0.535 6.535 10 N -0.697 5.697 11 C 0.146 3.854 12 C 0.126 3.874 13 N -0.689 5.689 14 C -0.239 4.239 15 H 0.073 0.927 16 C -0.008 4.008 17 N -0.931 5.931 18 Si 0.907 3.093 19 H -0.279 1.279 20 H -0.291 1.291 21 H -0.291 1.291 22 C -0.185 4.185 23 C -0.185 4.185 24 H 0.090 0.910 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.404 0.596 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.388 0.612 34 H 0.256 0.744 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.074 6.177 -7.041 16.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.102 4.102 3 N -0.067 5.067 4 O 0.032 5.968 5 C -0.052 4.052 6 C -0.134 4.134 7 C -0.252 4.252 8 C 0.377 3.623 9 O -0.412 6.412 10 N -0.346 5.346 11 C 0.021 3.979 12 C 0.032 3.968 13 N -0.328 5.328 14 C -0.370 4.370 15 H 0.091 0.909 16 C -0.205 4.205 17 N -0.578 5.578 18 Si 0.738 3.262 19 H -0.204 1.204 20 H -0.218 1.218 21 H -0.218 1.218 22 C -0.226 4.226 23 C -0.223 4.223 24 H 0.108 0.892 25 H 0.099 0.901 26 H 0.105 0.895 27 H 0.112 0.888 28 H 0.108 0.892 29 H 0.112 0.888 30 H 0.238 0.762 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.223 0.777 34 H 0.066 0.934 35 H 0.115 0.885 36 H 0.101 0.899 37 H 0.105 0.895 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 12.585 6.956 -7.831 16.374 hybrid contribution -1.066 -0.769 0.551 1.426 sum 11.519 6.187 -7.280 14.965 Atomic orbital electron populations 1.20268 0.84976 1.04226 1.04329 1.24793 0.98693 0.86444 1.00300 1.73598 0.89109 1.23361 1.20633 1.84512 1.21564 1.22554 1.68161 1.24580 0.97346 0.83817 0.99442 1.20438 0.89010 0.99263 1.04668 1.22020 0.92785 0.95604 1.14814 1.16861 0.77421 0.83701 0.84289 1.90810 1.51125 1.67889 1.31405 1.45912 1.68832 1.12018 1.07844 1.21350 1.01057 0.78937 0.96554 1.20153 0.86888 0.98845 0.90904 1.41796 1.01808 1.56837 1.32397 1.19209 0.85946 1.26609 1.05235 0.90870 1.24758 0.98257 1.00645 0.96803 1.69666 1.29550 1.44135 1.14492 0.86122 0.83993 0.78449 0.77678 1.20362 1.21772 1.21794 1.23373 1.04374 0.91727 1.03096 1.23083 0.95727 1.02941 1.00556 0.89154 0.90075 0.89530 0.88796 0.89177 0.88809 0.76206 0.91788 0.90318 0.77726 0.93417 0.88526 0.89868 0.89497 0.88950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.02 10.49 36.00 0.38 -0.64 16 2 C 0.06 0.86 7.59 -79.77 -0.61 0.26 16 3 N -0.36 -5.20 12.01 34.78 0.42 -4.78 16 4 O 0.09 1.20 11.06 18.63 0.21 1.41 16 5 C 0.01 0.14 7.55 -34.63 -0.26 -0.12 16 6 C -0.08 -0.58 10.33 36.01 0.37 -0.21 16 7 C -0.24 -3.50 6.24 -102.89 -0.64 -4.15 16 8 C 0.59 9.58 7.60 -12.53 -0.10 9.48 16 9 O -0.53 -10.37 17.10 5.26 0.09 -10.28 16 10 N -0.70 -10.75 5.51 -61.39 -0.34 -11.09 16 11 C 0.15 2.51 5.73 -4.04 -0.02 2.48 16 12 C 0.13 2.28 2.15 -131.82 -0.28 2.00 16 13 N -0.69 -15.84 5.49 -47.23 -0.26 -16.10 16 14 C -0.24 -6.25 9.56 -15.06 -0.14 -6.39 16 15 H 0.07 1.90 7.77 -52.48 -0.41 1.49 16 16 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 17 N -0.93 -26.85 13.06 55.49 0.72 -26.13 16 18 Si 0.91 21.77 29.55 -169.99 -5.02 16.75 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 C -0.18 -3.03 10.11 -26.70 -0.27 -3.30 16 23 C -0.19 -2.75 10.14 -26.69 -0.27 -3.02 16 24 H 0.09 1.10 8.14 -51.92 -0.42 0.68 16 25 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 27 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.09 0.69 8.11 -51.93 -0.42 0.27 16 30 H 0.40 5.82 8.46 -40.82 -0.35 5.48 16 31 H 0.06 1.02 7.94 -51.93 -0.41 0.61 16 32 H 0.08 1.58 7.73 -51.93 -0.40 1.17 16 33 H 0.39 9.54 8.04 -40.82 -0.33 9.21 16 34 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 35 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 36 H 0.08 1.19 8.08 -51.93 -0.42 0.77 16 37 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 337.68 15.07 5.09 5.09 Total: -1.00 -31.28 337.68 -6.29 -37.57 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -5.25 Total: 11.50 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: -1.94 Total: -3.94 kcal Atomic # 7 Polarization: -58.64 SS G_CDS: 0.55 Total: -58.09 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.30 Total: -8.88 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.28 -6.29 -37.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723490575.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.552 kcal (2) G-P(sol) polarization free energy of solvation -31.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds