Wall clock time and date at job start Tue Mar 31 2020 01:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.41264 * 126.70197 * 2 1 4 4 C 1.36826 * 103.84276 * 180.08355 * 3 2 1 5 5 C 1.47512 * 126.94169 * 179.97438 * 4 3 2 6 6 O 1.21583 * 120.00067 * 359.71483 * 5 4 3 7 7 N 1.34777 * 119.99606 * 179.97438 * 5 4 3 8 8 C 1.46505 * 119.99724 * 179.72699 * 7 5 4 9 9 C 1.52999 * 109.47192 * 180.02562 * 8 7 5 10 10 H 1.08994 * 109.47373 * 64.99483 * 9 8 7 11 11 N 1.46501 * 109.46823 * 304.99724 * 9 8 7 12 12 C 1.36934 * 120.00374 * 154.99825 * 11 9 8 13 13 H 1.08009 * 119.99521 * 0.02562 * 12 11 9 14 14 C 1.38815 * 120.00527 * 179.97438 * 12 11 9 15 15 N 1.31621 * 120.00191 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 119.99756 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.47111 * 89.99971 * 16 14 12 18 18 H 1.48499 * 109.46889 * 209.99544 * 16 14 12 19 19 H 1.48500 * 109.47210 * 329.99851 * 16 14 12 20 20 C 1.52996 * 109.47481 * 185.00383 * 9 8 7 21 21 C 1.53003 * 117.49677 * 248.74722 * 20 9 8 22 22 C 1.52996 * 117.50354 * 180.08448 * 20 9 8 23 23 O 1.34640 * 106.11404 * 359.67291 * 4 3 2 24 24 N 1.20891 * 111.46789 * 0.21844 * 23 4 3 25 25 H 1.09002 * 109.46949 * 270.27803 * 1 2 3 26 26 H 1.09003 * 109.46897 * 30.27495 * 1 2 3 27 27 H 1.08999 * 109.47428 * 150.28019 * 1 2 3 28 28 H 1.07999 * 128.08197 * 359.97438 * 3 2 1 29 29 H 0.97000 * 120.00483 * 359.73132 * 7 5 4 30 30 H 1.09003 * 109.46699 * 299.99993 * 8 7 5 31 31 H 1.08993 * 109.47199 * 60.00006 * 8 7 5 32 32 H 0.97009 * 120.00100 * 335.00498 * 11 9 8 33 33 H 0.96994 * 119.99783 * 180.02562 * 15 14 12 34 34 H 1.09003 * 115.54779 * 34.40714 * 20 9 8 35 35 H 1.09003 * 117.49587 * 359.97438 * 21 20 9 36 36 H 1.08996 * 117.50143 * 145.01559 * 21 20 9 37 37 H 1.08993 * 117.50207 * 214.97621 * 22 20 9 38 38 H 1.09001 * 117.49795 * 359.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3513 1.1326 0.0000 4 6 3.6121 0.6011 -0.0019 5 6 4.8870 1.3431 -0.0033 6 8 4.8828 2.5589 -0.0080 7 7 6.0565 0.6732 -0.0047 8 6 7.3227 1.4100 -0.0121 9 6 8.4891 0.4198 -0.0128 10 1 8.4815 -0.1499 -0.9419 11 7 8.3528 -0.4959 1.1226 12 6 8.9267 -1.7382 1.0730 13 1 9.4801 -2.0428 0.1970 14 6 8.7980 -2.6057 2.1491 15 7 9.3500 -3.7997 2.1015 16 14 7.8414 -2.0787 3.6645 17 1 6.4146 -2.4592 3.5064 18 1 8.4031 -2.7515 4.8632 19 1 7.9458 -0.6065 3.8286 20 6 9.8084 1.1856 0.1053 21 6 10.7320 1.1938 -1.1144 22 6 11.1012 0.3676 0.1202 23 8 3.4540 -0.7360 0.0045 24 7 2.2848 -1.0433 0.0055 25 1 -0.3633 0.0050 1.0277 26 1 -0.3633 0.8875 -0.5181 27 1 -0.3634 -0.8925 -0.5095 28 1 2.0678 2.1747 -0.0004 29 1 6.0599 -0.2968 -0.0008 30 1 7.3751 2.0333 -0.9048 31 1 7.3814 2.0405 0.8751 32 1 7.8559 -0.2223 1.9096 33 1 9.2598 -4.4059 2.8533 34 1 9.7757 2.0866 0.7180 35 1 10.3999 0.6533 -2.0008 36 1 11.3073 2.1000 -1.3040 37 1 11.9193 0.7305 0.7423 38 1 11.0119 -0.7162 0.0463 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731391732.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:02 Heat of formation + Delta-G solvation = 63.894157 kcal Electronic energy + Delta-G solvation = -21537.038976 eV Core-core repulsion = 18191.339471 eV Total energy + Delta-G solvation = -3345.699505 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -45.07395 -39.63381 -37.71088 -35.21204 -34.75940 -33.54728 -32.22346 -31.18206 -28.94014 -28.58562 -24.77032 -23.19694 -22.85264 -21.95103 -21.70202 -20.30049 -19.66428 -18.50612 -17.84773 -17.49322 -16.17290 -16.02123 -15.48287 -14.97806 -14.53830 -14.34255 -13.96178 -13.81872 -13.61898 -13.40287 -13.24349 -12.92136 -12.86935 -12.52809 -11.60411 -11.53194 -11.43691 -10.96782 -10.90801 -10.78958 -10.37314 -10.28024 -10.24986 -9.82907 -9.75418 -9.57575 -9.42865 -9.05416 -8.99235 -7.39211 -5.83788 -3.20741 0.74572 1.91611 2.59174 2.98878 3.26128 3.34494 3.36996 3.43158 3.91713 4.34436 4.38502 4.53354 4.83796 4.92207 5.02070 5.16369 5.20713 5.26804 5.38240 5.40420 5.50040 5.53780 5.60061 5.68776 5.83337 5.83813 5.90903 6.08640 6.11086 6.31378 6.53447 6.58167 6.69055 6.96639 7.43261 7.89220 7.97059 8.07444 8.33848 9.10757 9.83496 10.01664 11.33785 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.015148 B = 0.005382 C = 0.004274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.968663 B = 5200.873448 C = 6549.029569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.005 3.995 3 C -0.158 4.158 4 C -0.075 4.075 5 C 0.600 3.400 6 O -0.524 6.524 7 N -0.698 5.698 8 C 0.114 3.886 9 C 0.198 3.802 10 H 0.067 0.933 11 N -0.743 5.743 12 C -0.244 4.244 13 H 0.093 0.907 14 C 0.012 3.988 15 N -0.929 5.929 16 Si 0.877 3.123 17 H -0.283 1.283 18 H -0.291 1.291 19 H -0.277 1.277 20 C -0.164 4.164 21 C -0.193 4.193 22 C -0.154 4.154 23 O 0.124 5.876 24 N -0.344 5.344 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.182 0.818 29 H 0.418 0.582 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.362 0.638 33 H 0.260 0.740 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.461 10.955 -5.722 16.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.153 4.153 3 C -0.181 4.181 4 C -0.142 4.142 5 C 0.383 3.617 6 O -0.401 6.401 7 N -0.349 5.349 8 C -0.010 4.010 9 C 0.088 3.912 10 H 0.085 0.915 11 N -0.385 5.385 12 C -0.374 4.374 13 H 0.111 0.889 14 C -0.185 4.185 15 N -0.576 5.576 16 Si 0.707 3.293 17 H -0.210 1.210 18 H -0.218 1.218 19 H -0.203 1.203 20 C -0.186 4.186 21 C -0.231 4.231 22 C -0.191 4.191 23 O 0.050 5.950 24 N -0.045 5.045 25 H 0.100 0.900 26 H 0.102 0.898 27 H 0.097 0.903 28 H 0.199 0.801 29 H 0.255 0.745 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.195 0.805 33 H 0.070 0.930 34 H 0.109 0.891 35 H 0.106 0.894 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -11.560 10.262 -5.778 16.502 hybrid contribution -0.573 0.656 1.356 1.612 sum -12.134 10.918 -4.422 16.911 Atomic orbital electron populations 1.20186 0.85364 1.03997 1.03620 1.23661 0.99362 0.88407 1.03877 1.22816 0.89933 1.01598 1.03714 1.24351 0.97495 0.84069 1.08249 1.16540 0.81218 0.86129 0.77850 1.90845 1.86247 1.11822 1.51179 1.45974 1.05074 1.12037 1.71827 1.21819 0.81844 0.94885 1.02475 1.20034 0.89120 0.89226 0.92842 0.91534 1.42851 1.64799 1.14593 1.16275 1.18990 1.27531 0.88307 1.02551 0.88910 1.24626 1.00148 0.95975 0.97704 1.69683 1.48539 1.07469 1.31924 0.86676 0.80387 0.77867 0.84347 1.20955 1.21771 1.20344 1.22933 0.93757 1.01164 1.00747 1.22962 1.04878 1.02325 0.92925 1.22853 0.97153 1.00176 0.98906 1.85051 1.21296 1.22075 1.66548 1.73779 0.89312 1.24342 1.17078 0.89974 0.89791 0.90298 0.80053 0.74458 0.90479 0.91142 0.80473 0.92974 0.89073 0.89351 0.90007 0.90171 0.87054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.57 10.47 36.01 0.38 -0.19 16 2 C 0.00 0.05 7.31 -82.16 -0.60 -0.55 16 3 C -0.16 -1.90 10.92 -38.94 -0.43 -2.32 16 4 C -0.08 -1.07 7.29 -36.31 -0.26 -1.33 16 5 C 0.60 9.17 7.82 -12.48 -0.10 9.07 16 6 O -0.52 -8.95 16.91 5.29 0.09 -8.86 16 7 N -0.70 -10.56 5.39 -61.36 -0.33 -10.89 16 8 C 0.11 1.69 5.22 -4.04 -0.02 1.67 16 9 C 0.20 3.35 2.70 -67.93 -0.18 3.17 16 10 H 0.07 1.16 7.84 -51.93 -0.41 0.75 16 11 N -0.74 -15.62 4.34 -53.43 -0.23 -15.85 16 12 C -0.24 -6.22 9.11 -15.06 -0.14 -6.35 16 13 H 0.09 2.53 7.14 -52.48 -0.37 2.16 16 14 C 0.01 0.33 5.50 -17.43 -0.10 0.23 16 15 N -0.93 -27.87 13.97 55.49 0.78 -27.09 16 16 Si 0.88 21.36 27.74 -169.99 -4.71 16.65 16 17 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 18 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 19 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 20 C -0.16 -2.63 5.36 -90.62 -0.49 -3.12 16 21 C -0.19 -2.76 10.18 -26.69 -0.27 -3.03 16 22 C -0.15 -2.63 9.78 -26.69 -0.26 -2.90 16 23 O 0.12 1.88 11.04 15.55 0.17 2.06 16 24 N -0.34 -5.08 12.04 33.52 0.40 -4.68 16 25 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.18 1.74 8.06 -52.49 -0.42 1.32 16 29 H 0.42 6.53 7.96 -40.82 -0.33 6.20 16 30 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.36 7.77 5.66 -40.82 -0.23 7.54 16 33 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 34 H 0.09 1.38 8.11 -51.93 -0.42 0.96 16 35 H 0.09 1.23 8.05 -51.93 -0.42 0.81 16 36 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.11 2.25 6.23 -51.93 -0.32 1.92 16 LS Contribution 328.17 15.07 4.95 4.95 Total: -1.00 -30.55 328.17 -6.41 -36.96 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -5.05 Total: 12.42 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: -2.47 Total: -5.66 kcal Atomic # 7 Polarization: -59.13 SS G_CDS: 0.62 Total: -58.51 kcal Atomic # 8 Polarization: -7.07 SS G_CDS: 0.26 Total: -6.80 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.71 Total: 16.65 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.55 -6.41 -36.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731391732.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.852 kcal (2) G-P(sol) polarization free energy of solvation -30.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds