Wall clock time and date at job start Tue Mar 31 2020 01:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.34864 * 119.09394 * 2 1 4 4 C 1.41676 * 119.33794 * 180.02562 * 3 2 1 5 5 O 1.22075 * 121.07249 * 179.97438 * 4 3 2 6 6 C 1.47106 * 117.85887 * 0.02562 * 4 3 2 7 7 C 1.47293 * 120.88144 * 180.02562 * 6 4 3 8 8 O 1.21620 * 119.99927 * 359.97438 * 7 6 4 9 9 N 1.34771 * 119.99706 * 180.02562 * 7 6 4 10 10 C 1.46505 * 119.99622 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.47325 * 294.99862 * 11 10 9 13 13 C 1.52994 * 109.47404 * 174.99693 * 11 10 9 14 14 N 1.46500 * 109.47170 * 54.99826 * 11 10 9 15 15 C 1.36939 * 120.00440 * 205.00175 * 14 11 10 16 16 H 1.08007 * 119.99440 * 359.97438 * 15 14 11 17 17 C 1.38814 * 120.00407 * 180.02562 * 15 14 11 18 18 N 1.31615 * 119.99666 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99989 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46829 * 89.99758 * 19 17 15 21 21 H 1.48501 * 109.46981 * 209.99745 * 19 17 15 22 22 H 1.48496 * 109.47028 * 329.99992 * 19 17 15 23 23 C 1.37989 * 118.23888 * 0.27012 * 6 4 3 24 24 N 1.34349 * 120.36692 * 359.42433 * 23 6 4 25 25 H 0.97003 * 118.80159 * 180.32436 * 24 23 6 26 26 H 1.08991 * 109.46951 * 89.99994 * 1 2 3 27 27 H 1.09005 * 109.46324 * 210.00142 * 1 2 3 28 28 H 1.08996 * 109.47144 * 329.99358 * 1 2 3 29 29 H 1.07994 * 120.33683 * 0.02562 * 3 2 1 30 30 H 0.96996 * 120.00772 * 359.97438 * 9 7 6 31 31 H 1.09002 * 109.47068 * 299.99729 * 10 9 7 32 32 H 1.09001 * 109.47372 * 59.99816 * 10 9 7 33 33 H 1.09000 * 109.47476 * 300.00087 * 13 11 10 34 34 H 1.09008 * 109.46970 * 60.00049 * 13 11 10 35 35 H 1.08996 * 109.47654 * 179.97438 * 13 11 10 36 36 H 0.96998 * 120.00051 * 24.99940 * 14 11 10 37 37 H 0.97000 * 119.99759 * 180.02562 * 18 17 15 38 38 H 1.07997 * 119.81803 * 179.70099 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1628 1.1785 0.0000 4 6 3.5796 1.1845 -0.0006 5 8 4.2052 2.2328 -0.0010 6 6 4.2725 -0.1131 -0.0017 7 6 5.7437 -0.1845 -0.0017 8 8 6.4022 0.8380 -0.0013 9 7 6.3602 -1.3830 -0.0033 10 6 7.8235 -1.4540 -0.0039 11 6 8.2630 -2.9195 -0.0051 12 1 7.9518 -3.3929 0.9261 13 6 9.7858 -2.9952 -0.1315 14 7 7.6440 -3.6141 -1.1367 15 6 7.4495 -4.9686 -1.0854 16 1 7.7529 -5.5249 -0.2108 17 6 6.8634 -5.6268 -2.1579 18 7 6.4942 -4.9489 -3.2239 19 14 6.5989 -7.4747 -2.0881 20 1 5.2646 -7.7619 -1.5029 21 1 6.6688 -8.0369 -3.4608 22 1 7.6528 -8.0941 -1.2452 23 6 3.5078 -1.2617 -0.0079 24 7 2.1665 -1.1846 -0.0011 25 1 1.6512 -2.0064 -0.0008 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3632 -0.8900 0.5139 28 1 -0.3633 0.8899 0.5139 29 1 1.6136 2.1083 0.0004 30 1 5.8351 -2.1985 -0.0040 31 1 8.2110 -0.9574 -0.8936 32 1 8.2117 -0.9593 0.8864 33 1 10.0971 -2.5218 -1.0627 34 1 10.2464 -2.4783 0.7105 35 1 10.0990 -4.0392 -0.1319 36 1 7.3718 -3.1145 -1.9223 37 1 6.0843 -5.4088 -3.9732 38 1 3.9900 -2.2279 -0.0137 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731629283.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:27:54 Heat of formation + Delta-G solvation = -34.040731 kcal Electronic energy + Delta-G solvation = -21466.366063 eV Core-core repulsion = 18116.419782 eV Total energy + Delta-G solvation = -3349.946280 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.98155 -38.88425 -37.52660 -36.13415 -33.75819 -33.19553 -31.94412 -31.13884 -28.85823 -28.27164 -25.65185 -24.03834 -23.64143 -22.17307 -20.66319 -20.17084 -18.67571 -17.48440 -17.36028 -16.20751 -16.00731 -15.47489 -15.23457 -15.00652 -14.54027 -14.34731 -13.80206 -13.57220 -13.29682 -13.19523 -13.01723 -12.91137 -12.80643 -12.34659 -12.18202 -12.06633 -11.85891 -11.38162 -10.94931 -10.79624 -10.37452 -10.04278 -9.77292 -9.69429 -9.56793 -9.07550 -8.97567 -8.52331 -8.04151 -7.10034 -5.88186 -3.18404 0.86965 1.29015 2.58569 3.26452 3.31337 3.39815 3.40916 3.63155 4.05379 4.07634 4.46750 4.47792 4.62841 4.88210 4.98464 5.02897 5.34429 5.37875 5.43982 5.51087 5.58473 5.65135 5.79573 5.97005 6.13658 6.20638 6.28108 6.42414 6.58039 6.61501 6.72760 6.76565 6.91416 7.09290 7.59400 8.07794 8.25569 8.29435 8.80039 9.41132 9.97547 10.33803 11.33522 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.015650 B = 0.004931 C = 0.003911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.724985 B = 5676.588030 C = 7156.839126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.154 3.846 3 C -0.273 4.273 4 C 0.409 3.591 5 O -0.483 6.483 6 C -0.297 4.297 7 C 0.568 3.432 8 O -0.525 6.525 9 N -0.718 5.718 10 C 0.118 3.882 11 C 0.159 3.841 12 H 0.053 0.947 13 C -0.162 4.162 14 N -0.725 5.725 15 C -0.241 4.241 16 H 0.071 0.929 17 C -0.011 4.011 18 N -0.930 5.930 19 Si 0.905 3.095 20 H -0.291 1.291 21 H -0.292 1.292 22 H -0.282 1.282 23 C 0.178 3.822 24 N -0.578 5.578 25 H 0.421 0.579 26 H 0.089 0.911 27 H 0.076 0.924 28 H 0.092 0.908 29 H 0.150 0.850 30 H 0.401 0.599 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.049 0.951 34 H 0.040 0.960 35 H 0.057 0.943 36 H 0.386 0.614 37 H 0.255 0.745 38 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.323 4.294 7.972 16.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.047 3.953 3 C -0.298 4.298 4 C 0.295 3.705 5 O -0.364 6.364 6 C -0.308 4.308 7 C 0.355 3.645 8 O -0.402 6.402 9 N -0.372 5.372 10 C -0.007 4.007 11 C 0.049 3.951 12 H 0.071 0.929 13 C -0.223 4.223 14 N -0.367 5.367 15 C -0.372 4.372 16 H 0.089 0.911 17 C -0.208 4.208 18 N -0.578 5.578 19 Si 0.736 3.264 20 H -0.219 1.219 21 H -0.218 1.218 22 H -0.208 1.208 23 C 0.046 3.954 24 N -0.184 5.184 25 H 0.258 0.742 26 H 0.108 0.892 27 H 0.095 0.905 28 H 0.111 0.889 29 H 0.167 0.833 30 H 0.238 0.762 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.076 0.924 36 H 0.220 0.780 37 H 0.065 0.935 38 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -12.500 5.462 8.012 15.820 hybrid contribution -0.666 -1.956 -0.461 2.117 sum -13.166 3.505 7.551 15.577 Atomic orbital electron populations 1.21091 0.88042 1.04737 1.04346 1.20278 0.94729 0.85638 0.94634 1.22239 0.96360 0.97200 1.13959 1.18158 0.88198 0.87957 0.76221 1.90803 1.70001 1.33282 1.42340 1.22553 0.94717 0.94945 1.18573 1.17484 0.86090 0.83756 0.77213 1.90813 1.65952 1.34173 1.49220 1.45873 1.08024 1.07826 1.75428 1.21650 0.79430 0.98026 1.01571 1.20522 0.92194 0.89550 0.92812 0.92905 1.22351 0.98046 1.01672 1.00238 1.42511 1.72024 1.05446 1.16757 1.19251 1.33082 0.84013 1.00896 0.91110 1.24738 1.01818 0.97759 0.96446 1.69674 1.47042 1.34597 1.06508 0.86230 0.77785 0.85606 0.76761 1.21869 1.21824 1.20763 1.22402 0.82469 1.00489 0.89994 1.40735 1.06058 1.08937 1.62657 0.74218 0.89237 0.90481 0.88883 0.83256 0.76239 0.91820 0.91819 0.93151 0.94127 0.92400 0.78032 0.93475 0.80794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.47 10.03 36.01 0.36 -0.11 16 2 C 0.15 1.25 6.79 -82.13 -0.56 0.69 16 3 C -0.27 -3.27 9.57 -39.47 -0.38 -3.65 16 4 C 0.41 7.13 6.97 -34.67 -0.24 6.89 16 5 O -0.48 -10.77 16.41 -15.16 -0.25 -11.02 16 6 C -0.30 -4.79 6.05 -102.71 -0.62 -5.41 16 7 C 0.57 11.00 7.77 -12.58 -0.10 10.90 16 8 O -0.53 -12.48 15.57 -14.75 -0.23 -12.71 16 9 N -0.72 -12.47 5.34 -61.42 -0.33 -12.80 16 10 C 0.12 2.10 5.23 -4.04 -0.02 2.08 16 11 C 0.16 2.97 3.05 -67.94 -0.21 2.76 16 12 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 13 C -0.16 -2.84 9.49 37.15 0.35 -2.48 16 14 N -0.72 -16.54 4.56 -53.43 -0.24 -16.78 16 15 C -0.24 -6.08 9.93 -15.06 -0.15 -6.23 16 16 H 0.07 1.74 7.83 -52.48 -0.41 1.33 16 17 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 18 N -0.93 -26.16 13.06 55.49 0.72 -25.44 16 19 Si 0.90 20.78 29.55 -169.99 -5.02 15.76 16 20 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 C 0.18 1.96 10.74 -16.54 -0.18 1.78 16 24 N -0.58 -4.34 5.16 -9.00 -0.05 -4.38 16 25 H 0.42 1.56 8.70 -40.82 -0.35 1.21 16 26 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.08 0.15 8.12 -51.93 -0.42 -0.27 16 28 H 0.09 0.29 8.05 -51.93 -0.42 -0.13 16 29 H 0.15 1.54 8.06 -52.49 -0.42 1.12 16 30 H 0.40 6.43 6.21 -40.82 -0.25 6.18 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.04 0.60 8.14 -51.92 -0.42 0.17 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.39 9.64 7.80 -40.82 -0.32 9.32 16 37 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 38 H 0.18 1.63 6.42 -52.49 -0.34 1.29 16 LS Contribution 328.52 15.07 4.95 4.95 Total: -1.00 -37.06 328.52 -7.31 -44.37 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -5.03 Total: 11.25 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: -1.83 Total: 6.80 kcal Atomic # 7 Polarization: -59.51 SS G_CDS: 0.11 Total: -59.40 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: -0.48 Total: -23.73 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -37.06 -7.31 -44.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731629283.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.326 kcal (2) G-P(sol) polarization free energy of solvation -37.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds