Wall clock time and date at job start Tue Mar 31 2020 01:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34864 * 119.10117 * 2 1 4 4 C 1.41663 * 119.34357 * 180.02562 * 3 2 1 5 5 O 1.22087 * 121.07318 * 180.02562 * 4 3 2 6 6 C 1.47111 * 117.85941 * 359.74230 * 4 3 2 7 7 C 1.47285 * 120.87999 * 180.28441 * 6 4 3 8 8 O 1.21621 * 120.00093 * 0.22885 * 7 6 4 9 9 N 1.34772 * 119.99800 * 180.23595 * 7 6 4 10 10 C 1.46506 * 120.00269 * 179.97438 * 9 7 6 11 11 H 1.08998 * 109.46741 * 34.99659 * 10 9 7 12 12 C 1.52995 * 109.47074 * 274.99801 * 10 9 7 13 13 C 1.52996 * 109.47130 * 154.99504 * 10 9 7 14 14 N 1.46500 * 109.47566 * 305.00186 * 13 10 9 15 15 C 1.36934 * 120.00265 * 179.97438 * 14 13 10 16 16 H 1.08003 * 120.00082 * 0.02562 * 15 14 13 17 17 C 1.38811 * 120.00002 * 180.02562 * 15 14 13 18 18 N 1.31620 * 120.00228 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00037 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47176 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47316 * 119.99874 * 19 17 15 22 22 H 1.48499 * 109.47053 * 239.99921 * 19 17 15 23 23 C 1.37985 * 118.23530 * 0.51540 * 6 4 3 24 24 N 1.34355 * 120.37113 * 359.47108 * 23 6 4 25 25 H 0.96997 * 118.80204 * 180.25816 * 24 23 6 26 26 H 1.09003 * 109.47130 * 269.98294 * 1 2 3 27 27 H 1.08998 * 109.46766 * 29.98034 * 1 2 3 28 28 H 1.08999 * 109.46815 * 149.97795 * 1 2 3 29 29 H 1.08007 * 120.32748 * 0.02562 * 3 2 1 30 30 H 0.96999 * 120.00131 * 359.97438 * 9 7 6 31 31 H 1.09007 * 109.47027 * 59.99533 * 12 10 9 32 32 H 1.08999 * 109.47165 * 179.97438 * 12 10 9 33 33 H 1.08998 * 109.47221 * 299.99565 * 12 10 9 34 34 H 1.09003 * 109.46931 * 65.00451 * 13 10 9 35 35 H 1.09004 * 109.46867 * 185.00293 * 13 10 9 36 36 H 0.97003 * 119.99774 * 359.97438 * 14 13 10 37 37 H 0.96995 * 120.00169 * 180.02562 * 18 17 15 38 38 H 1.08002 * 119.81675 * 179.75612 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1630 1.1784 0.0000 4 6 3.5796 1.1844 -0.0006 5 8 4.2053 2.2327 -0.0001 6 6 4.2725 -0.1133 0.0047 7 6 5.7436 -0.1847 0.0108 8 8 6.4021 0.8379 0.0156 9 7 6.3601 -1.3831 0.0108 10 6 7.8234 -1.4542 0.0162 11 1 8.2249 -0.6322 0.6088 12 6 8.3444 -1.3506 -1.4186 13 6 8.2671 -2.7859 0.6250 14 7 7.6699 -2.9384 1.9540 15 6 7.9260 -4.0611 2.6951 16 1 8.5686 -4.8340 2.2999 17 6 7.3597 -4.2058 3.9541 18 7 6.5762 -3.2641 4.4355 19 14 7.7097 -5.7369 4.9653 20 1 8.6129 -6.6371 4.2042 21 1 8.3589 -5.3486 6.2432 22 1 6.4350 -6.4427 5.2522 23 6 3.5077 -1.2618 -0.0010 24 7 2.1664 -1.1847 -0.0004 25 1 1.6510 -2.0064 -0.0007 26 1 -0.3633 -0.0003 1.0277 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3633 -0.8898 -0.5142 29 1 1.6136 2.1083 0.0004 30 1 5.8350 -2.1987 0.0072 31 1 8.0282 -0.4019 -1.8523 32 1 9.4331 -1.4031 -1.4145 33 1 7.9429 -2.1727 -2.0111 34 1 7.9410 -3.6050 -0.0160 35 1 9.3536 -2.8021 0.7109 36 1 7.0930 -2.2441 2.3091 37 1 6.1808 -3.3650 5.3155 38 1 3.9900 -2.2281 -0.0013 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732976857.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:28:18 Heat of formation + Delta-G solvation = -62.648635 kcal Electronic energy + Delta-G solvation = -21578.582900 eV Core-core repulsion = 18227.396087 eV Total energy + Delta-G solvation = -3351.186812 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.00709 -40.40978 -38.79926 -37.51606 -35.43758 -34.44135 -33.11547 -32.36902 -31.24222 -28.79162 -27.40287 -25.22289 -24.52536 -23.44782 -22.57697 -21.56894 -19.97321 -19.06900 -18.58770 -17.33118 -17.18866 -16.95493 -16.62622 -16.40893 -15.75098 -15.53804 -15.32938 -15.12134 -14.68265 -14.42596 -13.96512 -13.89174 -13.70007 -13.62685 -13.53716 -13.36622 -13.04925 -13.02182 -12.80501 -12.61475 -12.08502 -11.87720 -11.68339 -11.14889 -10.95281 -10.47583 -10.30588 -10.02203 -9.17558 -9.00038 -7.92280 -5.22605 -0.16778 0.35053 1.49118 1.51914 1.60925 1.78143 1.94226 2.23230 2.57796 2.82845 3.35037 3.41981 3.64907 3.73032 3.84977 3.98734 4.06504 4.27031 4.32096 4.42245 4.53361 4.75203 4.79533 4.82663 4.83877 4.89216 4.95924 5.14155 5.19489 5.31197 5.34395 5.53455 5.62921 5.69126 6.10015 6.27729 6.68168 7.10200 7.35089 7.40293 8.08236 8.32824 9.30924 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.015423 B = 0.004881 C = 0.004043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.088124 B = 5735.729890 C = 6924.192768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.192 3.808 3 C -0.305 4.305 4 C 0.384 3.616 5 O -0.567 6.567 6 C -0.353 4.353 7 C 0.566 3.434 8 O -0.582 6.582 9 N -0.704 5.704 10 C 0.139 3.861 11 H 0.048 0.952 12 C -0.145 4.145 13 C 0.149 3.851 14 N -0.745 5.745 15 C -0.241 4.241 16 H 0.082 0.918 17 C -0.073 4.073 18 N -0.970 5.970 19 Si 0.973 3.027 20 H -0.264 1.264 21 H -0.302 1.302 22 H -0.290 1.290 23 C 0.226 3.774 24 N -0.548 5.548 25 H 0.449 0.551 26 H 0.106 0.894 27 H 0.103 0.897 28 H 0.111 0.889 29 H 0.158 0.842 30 H 0.408 0.592 31 H 0.041 0.959 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.051 0.949 35 H 0.036 0.964 36 H 0.373 0.627 37 H 0.249 0.751 38 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.711 -3.321 -13.760 21.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.083 3.917 3 C -0.328 4.328 4 C 0.277 3.723 5 O -0.455 6.455 6 C -0.363 4.363 7 C 0.356 3.644 8 O -0.462 6.462 9 N -0.357 5.357 10 C 0.034 3.966 11 H 0.066 0.934 12 C -0.204 4.204 13 C 0.022 3.978 14 N -0.388 5.388 15 C -0.373 4.373 16 H 0.099 0.901 17 C -0.265 4.265 18 N -0.621 5.621 19 Si 0.802 3.198 20 H -0.188 1.188 21 H -0.230 1.230 22 H -0.217 1.217 23 C 0.090 3.910 24 N -0.155 5.155 25 H 0.292 0.708 26 H 0.124 0.876 27 H 0.122 0.878 28 H 0.130 0.870 29 H 0.175 0.825 30 H 0.245 0.755 31 H 0.061 0.939 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.069 0.931 35 H 0.054 0.946 36 H 0.205 0.795 37 H 0.058 0.942 38 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -15.852 -2.235 -13.753 21.105 hybrid contribution 0.124 -0.571 1.184 1.321 sum -15.728 -2.807 -12.568 20.328 Atomic orbital electron populations 1.21305 0.83604 1.07008 1.05993 1.20850 0.96996 0.84241 0.89640 1.22126 0.93797 0.99699 1.17214 1.18975 0.90514 0.87682 0.75143 1.90753 1.71800 1.35517 1.47443 1.22247 0.93445 0.96516 1.24115 1.17998 0.87505 0.83323 0.75594 1.90772 1.67451 1.36117 1.51887 1.45728 1.07319 1.07520 1.75084 1.21081 0.80011 0.97829 0.97666 0.93365 1.21994 1.02150 1.02025 0.94191 1.21119 0.96582 0.93945 0.86156 1.42592 1.58193 1.22159 1.15838 1.19698 1.23029 0.97089 0.97462 0.90056 1.25540 1.00733 1.01204 0.99028 1.69856 1.37843 1.35738 1.18635 0.85082 0.77202 0.79254 0.78215 1.18831 1.22994 1.21687 1.22553 0.83510 0.99564 0.85338 1.40964 1.05132 1.10317 1.59094 0.70825 0.87575 0.87840 0.87018 0.82451 0.75527 0.93932 0.90162 0.90053 0.93125 0.94581 0.79515 0.94174 0.77756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.26 10.03 71.24 0.71 0.45 16 2 C 0.19 2.43 6.79 41.21 0.28 2.71 16 3 C -0.31 -7.43 9.57 22.34 0.21 -7.21 16 4 C 0.38 14.62 6.97 25.45 0.18 14.80 16 5 O -0.57 -28.72 16.41 13.54 0.22 -28.50 16 6 C -0.35 -11.74 6.05 -18.63 -0.11 -11.85 16 7 C 0.57 23.24 7.74 86.62 0.67 23.91 16 8 O -0.58 -30.57 15.24 15.04 0.23 -30.34 16 9 N -0.70 -23.94 4.47 -445.94 -1.99 -25.94 16 10 C 0.14 5.00 2.73 44.99 0.12 5.12 16 11 H 0.05 2.12 7.58 -2.39 -0.02 2.10 16 12 C -0.14 -4.12 9.48 71.98 0.68 -3.44 16 13 C 0.15 5.60 5.82 86.38 0.50 6.10 16 14 N -0.74 -36.35 5.43 -343.45 -1.87 -38.22 16 15 C -0.24 -12.79 9.99 84.03 0.84 -11.95 16 16 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 17 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 18 N -0.97 -58.10 13.06 21.65 0.28 -57.82 16 19 Si 0.97 44.33 29.55 68.60 2.03 46.36 16 20 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 21 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 22 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 23 C 0.23 4.15 10.74 84.25 0.90 5.06 16 24 N -0.55 -5.39 5.16 -182.38 -0.94 -6.33 16 25 H 0.45 -0.15 8.70 -92.71 -0.81 -0.96 16 26 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 27 H 0.10 0.17 8.05 -2.39 -0.02 0.15 16 28 H 0.11 -0.41 8.12 -2.39 -0.02 -0.43 16 29 H 0.16 3.42 8.06 -2.91 -0.02 3.40 16 30 H 0.41 11.19 6.68 -92.71 -0.62 10.57 16 31 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 32 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 36 H 0.37 20.15 7.33 -92.71 -0.68 19.47 16 37 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 38 H 0.21 2.40 6.42 -2.91 -0.02 2.38 16 Total: -1.00 -96.53 327.97 2.43 -94.10 By element: Atomic # 1 Polarization: 27.54 SS G_CDS: -0.99 Total: 26.54 kcal Atomic # 6 Polarization: 14.67 SS G_CDS: 5.46 Total: 20.13 kcal Atomic # 7 Polarization: -123.78 SS G_CDS: -4.52 Total: -128.30 kcal Atomic # 8 Polarization: -59.29 SS G_CDS: 0.45 Total: -58.84 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -96.53 2.43 -94.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732976857.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.455 kcal (2) G-P(sol) polarization free energy of solvation -96.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds