Wall clock time and date at job start Tue Mar 31 2020 02:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.49847 * 2 1 4 4 C 1.53189 * 109.49665 * 239.89804 * 2 1 3 5 5 N 1.46928 * 108.77673 * 185.41130 * 4 2 1 6 6 C 1.36930 * 120.63190 * 233.58586 * 5 4 2 7 7 H 1.08004 * 120.00065 * 27.69163 * 6 5 4 8 8 C 1.38814 * 119.99796 * 207.68526 * 6 5 4 9 9 N 1.31610 * 120.00176 * 17.37404 * 8 6 5 10 10 Si 1.86806 * 119.99706 * 197.36774 * 8 6 5 11 11 H 1.48505 * 109.46734 * 90.00339 * 10 8 6 12 12 H 1.48498 * 109.47228 * 209.99996 * 10 8 6 13 13 H 1.48495 * 109.47486 * 330.00540 * 10 8 6 14 14 C 1.46930 * 118.73281 * 53.61265 * 5 4 2 15 15 C 1.53189 * 108.77664 * 306.38988 * 14 5 4 16 16 C 1.53041 * 109.31425 * 54.63770 * 15 14 5 17 17 H 1.09001 * 109.45904 * 178.62056 * 16 15 14 18 18 N 1.46498 * 109.44750 * 58.64828 * 16 15 14 19 19 C 1.34775 * 119.99757 * 84.96636 * 18 16 15 20 20 O 1.21491 * 120.00125 * 0.02562 * 19 18 16 21 21 C 1.48331 * 119.99684 * 179.97438 * 19 18 16 22 22 C 1.42271 * 126.93795 * 180.02562 * 21 19 18 23 23 C 1.35311 * 103.92573 * 180.02562 * 22 21 19 24 24 O 1.34023 * 106.66743 * 359.97438 * 23 22 21 25 25 N 1.20911 * 111.84349 * 359.70836 * 24 23 22 26 26 H 1.09010 * 109.47049 * 299.93954 * 1 2 3 27 27 H 1.08998 * 109.47288 * 59.93492 * 1 2 3 28 28 H 1.08994 * 109.47573 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.58918 * 305.20507 * 4 2 1 30 30 H 1.09006 * 109.58509 * 65.62811 * 4 2 1 31 31 H 0.97000 * 120.00425 * 180.02562 * 9 8 6 32 32 H 1.08999 * 109.58683 * 66.17928 * 14 5 4 33 33 H 1.09003 * 109.58193 * 186.60546 * 14 5 4 34 34 H 1.09010 * 109.49558 * 294.68467 * 15 14 5 35 35 H 1.08997 * 109.50184 * 174.59033 * 15 14 5 36 36 H 0.97000 * 120.00115 * 264.96472 * 18 16 15 37 37 H 1.07999 * 128.03932 * 359.97438 * 22 21 19 38 38 H 1.07999 * 126.67104 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7243 -1.2493 5 7 3.5046 -0.8295 -1.1693 6 6 4.2935 -0.3801 -2.1944 7 1 3.9466 0.4195 -2.8322 8 6 5.5391 -0.9522 -2.4136 9 7 5.8279 -2.1226 -1.8856 10 14 6.8054 -0.0608 -3.4584 11 1 7.6354 0.8136 -2.5913 12 1 7.6755 -1.0546 -4.1369 13 1 6.1120 0.7674 -4.4774 14 6 4.1052 -1.4268 0.0313 15 6 3.5708 -0.6947 1.2662 16 6 2.0407 -0.7227 1.2486 17 1 1.6581 -0.2237 2.1390 18 7 1.5785 -2.1128 1.2314 19 6 1.4499 -2.7945 2.3869 20 8 1.7168 -2.2561 3.4428 21 6 0.9814 -4.2017 2.3694 22 6 0.7929 -5.0541 3.4928 23 6 0.3621 -6.2167 2.9509 24 8 0.3131 -6.0278 1.6249 25 7 0.6519 -4.9087 1.3171 26 1 -0.3634 0.5129 0.8906 27 1 -0.3634 0.5148 -0.8894 28 1 -0.3634 -1.0276 -0.0005 29 1 1.6052 -1.7220 -1.2974 30 1 1.7637 -0.1586 -2.1388 31 1 6.6984 -2.5222 -2.0385 32 1 3.8374 -2.4818 0.0876 33 1 5.1895 -1.3246 -0.0133 34 1 3.9159 0.3393 1.2540 35 1 3.9333 -1.1890 2.1675 36 1 1.3651 -2.5425 0.3884 37 1 0.9565 -4.8264 4.5358 38 1 0.1066 -7.1209 3.4833 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941851401.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:18 Heat of formation + Delta-G solvation = 47.382541 kcal Electronic energy + Delta-G solvation = -22449.606615 eV Core-core repulsion = 19103.191112 eV Total energy + Delta-G solvation = -3346.415502 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.13759 -39.86268 -37.67835 -34.31232 -34.01616 -32.64327 -31.79408 -31.10289 -29.98587 -26.04699 -25.53888 -24.40452 -23.04636 -22.06134 -21.14207 -20.58803 -18.67701 -18.46020 -17.79558 -16.90359 -16.67580 -15.37404 -14.89673 -14.77082 -14.58177 -14.01435 -13.75466 -13.73444 -13.43987 -13.31497 -12.95510 -12.56707 -12.14088 -11.73165 -11.50716 -11.38419 -11.09605 -10.84394 -10.71850 -10.49413 -10.36137 -10.22741 -10.08735 -10.00165 -9.87808 -9.75783 -9.44864 -8.68713 -8.46904 -6.69576 -5.79721 -3.22884 1.14443 1.64326 2.98048 3.22359 3.34534 3.37654 3.44582 3.45583 4.01020 4.48053 4.62411 4.94144 5.11137 5.21143 5.29825 5.34905 5.37079 5.48220 5.58529 5.74571 5.85569 5.96237 6.06943 6.13826 6.26341 6.31325 6.43083 6.58922 6.64144 6.73073 6.89073 6.91835 7.35093 7.64755 7.66294 7.78604 7.99540 8.31584 8.42806 9.19216 9.82541 10.38737 11.28395 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.020952 B = 0.005046 C = 0.004592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.055103 B = 5547.439043 C = 6095.817400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.119 4.119 3 H 0.085 0.915 4 C 0.150 3.850 5 N -0.591 5.591 6 C -0.255 4.255 7 H 0.067 0.933 8 C 0.004 3.996 9 N -0.901 5.901 10 Si 0.903 3.097 11 H -0.287 1.287 12 H -0.292 1.292 13 H -0.279 1.279 14 C 0.173 3.827 15 C -0.155 4.155 16 C 0.159 3.841 17 H 0.076 0.924 18 N -0.692 5.692 19 C 0.595 3.405 20 O -0.533 6.533 21 C -0.025 4.025 22 C -0.185 4.185 23 C -0.066 4.066 24 O 0.122 5.878 25 N -0.327 5.327 26 H 0.049 0.951 27 H 0.055 0.945 28 H 0.050 0.950 29 H 0.014 0.986 30 H 0.058 0.942 31 H 0.254 0.746 32 H 0.017 0.983 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.055 0.945 36 H 0.408 0.592 37 H 0.180 0.820 38 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.989 -5.090 9.301 16.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.140 4.140 3 H 0.103 0.897 4 C 0.023 3.977 5 N -0.313 5.313 6 C -0.384 4.384 7 H 0.084 0.916 8 C -0.195 4.195 9 N -0.545 5.545 10 Si 0.733 3.267 11 H -0.214 1.214 12 H -0.218 1.218 13 H -0.204 1.204 14 C 0.047 3.953 15 C -0.195 4.195 16 C 0.055 3.945 17 H 0.094 0.906 18 N -0.343 5.343 19 C 0.378 3.622 20 O -0.409 6.409 21 C -0.185 4.185 22 C -0.208 4.208 23 C -0.146 4.146 24 O 0.046 5.954 25 N -0.027 5.027 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.032 0.968 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.035 0.965 33 H 0.105 0.895 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.245 0.755 37 H 0.197 0.803 38 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -11.632 -4.437 8.674 15.173 hybrid contribution 0.761 0.048 0.057 0.765 sum -10.870 -4.389 8.731 14.617 Atomic orbital electron populations 1.21776 0.95706 1.01381 1.01193 1.21959 0.94626 1.00792 0.96574 0.89719 1.20926 0.86161 0.96188 0.94391 1.44064 0.99117 1.71545 1.16566 1.19189 0.98244 1.12396 1.08603 0.91577 1.25036 0.99902 0.95315 0.99253 1.70039 1.21861 1.14588 1.48042 0.86288 0.81662 0.78899 0.79899 1.21435 1.21796 1.20420 1.20735 0.99367 0.92922 0.82228 1.22586 0.93902 1.02158 1.00852 1.21018 0.95373 0.79788 0.98307 0.90564 1.46024 1.65341 1.14415 1.08518 1.16857 0.77969 0.82657 0.84692 1.90761 1.51116 1.68336 1.30712 1.23745 1.06228 0.98353 0.90157 1.22765 1.04424 0.92137 1.01436 1.26027 1.03742 1.01653 0.83222 1.84819 1.61657 1.24678 1.24293 1.74243 1.12902 0.92026 1.23557 0.93224 0.92574 0.93130 0.96827 0.92327 0.93622 0.96460 0.89463 0.91463 0.92629 0.75524 0.80291 0.76076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.05 37.16 0.34 -1.63 16 2 C -0.12 -2.00 2.67 -90.50 -0.24 -2.24 16 3 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 4 C 0.15 3.03 5.50 -3.71 -0.02 3.01 16 5 N -0.59 -14.53 2.99 -172.32 -0.52 -15.04 16 6 C -0.25 -6.92 9.59 -15.06 -0.14 -7.07 16 7 H 0.07 1.76 7.89 -52.48 -0.41 1.35 16 8 C 0.00 0.10 4.91 -17.43 -0.09 0.02 16 9 N -0.90 -26.29 11.19 55.49 0.62 -25.67 16 10 Si 0.90 21.71 29.59 -169.99 -5.03 16.68 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 14 C 0.17 4.18 5.05 -3.71 -0.02 4.16 16 15 C -0.15 -3.12 5.77 -26.61 -0.15 -3.27 16 16 C 0.16 2.81 2.21 -67.89 -0.15 2.66 16 17 H 0.08 1.33 7.58 -51.93 -0.39 0.93 16 18 N -0.69 -12.02 3.59 -54.56 -0.20 -12.22 16 19 C 0.60 10.40 7.81 -12.11 -0.09 10.30 16 20 O -0.53 -10.36 16.61 5.37 0.09 -10.27 16 21 C -0.03 -0.38 7.19 -82.53 -0.59 -0.97 16 22 C -0.19 -2.07 10.99 -39.08 -0.43 -2.50 16 23 C -0.07 -0.54 12.28 29.69 0.36 -0.18 16 24 O 0.12 1.42 11.18 17.22 0.19 1.61 16 25 N -0.33 -4.84 11.84 33.30 0.39 -4.45 16 26 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.70 7.54 -51.93 -0.39 0.31 16 29 H 0.01 0.28 6.64 -51.93 -0.34 -0.06 16 30 H 0.06 1.17 7.93 -51.93 -0.41 0.75 16 31 H 0.25 7.18 8.31 -40.82 -0.34 6.85 16 32 H 0.02 0.45 7.74 -51.93 -0.40 0.04 16 33 H 0.09 2.38 6.04 -51.93 -0.31 2.07 16 34 H 0.07 1.34 8.14 -51.92 -0.42 0.91 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.41 7.18 6.49 -40.82 -0.26 6.92 16 37 H 0.18 1.68 8.06 -52.49 -0.42 1.25 16 38 H 0.22 0.65 8.06 -52.49 -0.42 0.22 16 LS Contribution 314.31 15.07 4.74 4.74 Total: -1.00 -31.94 314.31 -5.97 -37.91 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -5.03 Total: 4.42 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: -1.23 Total: 2.29 kcal Atomic # 7 Polarization: -57.68 SS G_CDS: 0.30 Total: -57.38 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.28 Total: -8.66 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.94 -5.97 -37.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941851401.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.290 kcal (2) G-P(sol) polarization free energy of solvation -31.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds