Wall clock time and date at job start Tue Mar 31 2020 02:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.49847 * 2 1 4 4 C 1.53189 * 109.49665 * 239.89804 * 2 1 3 5 5 N 1.46928 * 108.77673 * 185.41130 * 4 2 1 6 6 C 1.36930 * 120.63190 * 233.58586 * 5 4 2 7 7 H 1.08004 * 120.00065 * 27.69163 * 6 5 4 8 8 C 1.38814 * 119.99796 * 207.68526 * 6 5 4 9 9 N 1.31610 * 120.00176 * 17.37404 * 8 6 5 10 10 Si 1.86806 * 119.99706 * 197.36774 * 8 6 5 11 11 H 1.48505 * 109.46734 * 90.00339 * 10 8 6 12 12 H 1.48498 * 109.47228 * 209.99996 * 10 8 6 13 13 H 1.48495 * 109.47486 * 330.00540 * 10 8 6 14 14 C 1.46930 * 118.73281 * 53.61265 * 5 4 2 15 15 C 1.53189 * 108.77664 * 306.38988 * 14 5 4 16 16 C 1.53041 * 109.31425 * 54.63770 * 15 14 5 17 17 H 1.09001 * 109.45904 * 178.62056 * 16 15 14 18 18 N 1.46498 * 109.44750 * 58.64828 * 16 15 14 19 19 C 1.34775 * 119.99757 * 84.96636 * 18 16 15 20 20 O 1.21491 * 120.00125 * 0.02562 * 19 18 16 21 21 C 1.48331 * 119.99684 * 179.97438 * 19 18 16 22 22 C 1.42271 * 126.93795 * 180.02562 * 21 19 18 23 23 C 1.35311 * 103.92573 * 180.02562 * 22 21 19 24 24 O 1.34023 * 106.66743 * 359.97438 * 23 22 21 25 25 N 1.20911 * 111.84349 * 359.70836 * 24 23 22 26 26 H 1.09010 * 109.47049 * 299.93954 * 1 2 3 27 27 H 1.08998 * 109.47288 * 59.93492 * 1 2 3 28 28 H 1.08994 * 109.47573 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.58918 * 305.20507 * 4 2 1 30 30 H 1.09006 * 109.58509 * 65.62811 * 4 2 1 31 31 H 0.97000 * 120.00425 * 180.02562 * 9 8 6 32 32 H 1.08999 * 109.58683 * 66.17928 * 14 5 4 33 33 H 1.09003 * 109.58193 * 186.60546 * 14 5 4 34 34 H 1.09010 * 109.49558 * 294.68467 * 15 14 5 35 35 H 1.08997 * 109.50184 * 174.59033 * 15 14 5 36 36 H 0.97000 * 120.00115 * 264.96472 * 18 16 15 37 37 H 1.07999 * 128.03932 * 359.97438 * 22 21 19 38 38 H 1.07999 * 126.67104 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7243 -1.2493 5 7 3.5046 -0.8295 -1.1693 6 6 4.2935 -0.3801 -2.1944 7 1 3.9466 0.4195 -2.8322 8 6 5.5391 -0.9522 -2.4136 9 7 5.8279 -2.1226 -1.8856 10 14 6.8054 -0.0608 -3.4584 11 1 7.6354 0.8136 -2.5913 12 1 7.6755 -1.0546 -4.1369 13 1 6.1120 0.7674 -4.4774 14 6 4.1052 -1.4268 0.0313 15 6 3.5708 -0.6947 1.2662 16 6 2.0407 -0.7227 1.2486 17 1 1.6581 -0.2237 2.1390 18 7 1.5785 -2.1128 1.2314 19 6 1.4499 -2.7945 2.3869 20 8 1.7168 -2.2561 3.4428 21 6 0.9814 -4.2017 2.3694 22 6 0.7929 -5.0541 3.4928 23 6 0.3621 -6.2167 2.9509 24 8 0.3131 -6.0278 1.6249 25 7 0.6519 -4.9087 1.3171 26 1 -0.3634 0.5129 0.8906 27 1 -0.3634 0.5148 -0.8894 28 1 -0.3634 -1.0276 -0.0005 29 1 1.6052 -1.7220 -1.2974 30 1 1.7637 -0.1586 -2.1388 31 1 6.6984 -2.5222 -2.0385 32 1 3.8374 -2.4818 0.0876 33 1 5.1895 -1.3246 -0.0133 34 1 3.9159 0.3393 1.2540 35 1 3.9333 -1.1890 2.1675 36 1 1.3651 -2.5425 0.3884 37 1 0.9565 -4.8264 4.5358 38 1 0.1066 -7.1209 3.4833 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941851401.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:17 Heat of formation + Delta-G solvation = 26.034745 kcal Electronic energy + Delta-G solvation = -22450.532324 eV Core-core repulsion = 19103.191112 eV Total energy + Delta-G solvation = -3347.341212 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -46.11593 -41.30412 -39.22814 -36.08397 -35.05494 -34.05793 -32.95969 -32.77516 -31.69145 -27.47429 -27.37161 -25.76590 -23.97987 -23.74832 -22.81880 -21.78787 -20.19170 -19.56738 -18.79516 -18.67743 -17.98365 -16.93330 -16.71398 -16.25433 -15.87978 -15.54198 -15.47574 -14.93054 -14.78541 -14.64728 -14.36210 -14.12932 -13.59938 -13.20458 -13.01164 -12.76040 -12.69638 -12.58866 -12.44012 -12.20095 -11.99536 -11.74669 -11.56065 -11.50892 -11.41736 -11.16014 -10.71522 -10.56767 -10.15245 -8.71693 -7.89458 -5.35352 0.11181 0.81223 1.45644 1.47456 1.55950 1.86752 2.07446 2.37208 2.49446 2.92713 3.25586 3.59793 3.66123 3.77000 3.99657 4.03854 4.06950 4.27437 4.34896 4.53626 4.59919 4.67006 4.70898 4.74520 4.91402 4.95329 5.00801 5.02697 5.10040 5.24529 5.36160 5.40503 5.48438 5.61393 5.68042 6.29554 6.35463 6.90350 7.11152 7.11961 7.82068 8.34161 9.16794 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.020952 B = 0.005046 C = 0.004592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.055103 B = 5547.439043 C = 6095.817400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.106 4.106 3 H 0.087 0.913 4 C 0.148 3.852 5 N -0.606 5.606 6 C -0.262 4.262 7 H 0.072 0.928 8 C -0.050 4.050 9 N -0.936 5.936 10 Si 0.967 3.033 11 H -0.287 1.287 12 H -0.297 1.297 13 H -0.265 1.265 14 C 0.187 3.813 15 C -0.143 4.143 16 C 0.163 3.837 17 H 0.087 0.913 18 N -0.692 5.692 19 C 0.593 3.407 20 O -0.559 6.559 21 C -0.060 4.060 22 C -0.202 4.202 23 C -0.027 4.027 24 O 0.128 5.872 25 N -0.357 5.357 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.048 0.952 29 H 0.012 0.988 30 H 0.062 0.938 31 H 0.248 0.752 32 H -0.008 1.008 33 H 0.050 0.950 34 H 0.071 0.929 35 H 0.050 0.950 36 H 0.406 0.594 37 H 0.194 0.806 38 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.723 -5.287 9.874 17.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.126 4.126 3 H 0.105 0.895 4 C 0.022 3.978 5 N -0.329 5.329 6 C -0.392 4.392 7 H 0.089 0.911 8 C -0.246 4.246 9 N -0.583 5.583 10 Si 0.796 3.204 11 H -0.214 1.214 12 H -0.224 1.224 13 H -0.190 1.190 14 C 0.061 3.939 15 C -0.183 4.183 16 C 0.059 3.941 17 H 0.105 0.895 18 N -0.343 5.343 19 C 0.378 3.622 20 O -0.437 6.437 21 C -0.217 4.217 22 C -0.225 4.225 23 C -0.108 4.108 24 O 0.050 5.950 25 N -0.056 5.056 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.067 0.933 29 H 0.030 0.970 30 H 0.081 0.919 31 H 0.058 0.942 32 H 0.010 0.990 33 H 0.068 0.932 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.242 0.758 37 H 0.211 0.789 38 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges -13.399 -4.599 9.235 16.911 hybrid contribution 1.241 -0.008 -0.090 1.245 sum -12.158 -4.607 9.145 15.896 Atomic orbital electron populations 1.21702 0.92831 1.01829 1.02788 1.21812 0.96840 0.99994 0.93959 0.89450 1.21086 0.83626 0.96617 0.96430 1.44276 1.00950 1.71484 1.16199 1.19559 0.98780 1.12152 1.08729 0.91063 1.25800 1.01804 0.95972 1.01003 1.70201 1.21898 1.16188 1.49964 0.85266 0.79089 0.77586 0.78506 1.21367 1.22393 1.18998 1.20400 0.97273 0.92104 0.84077 1.22408 0.96031 1.01506 0.98372 1.20949 0.93314 0.80496 0.99296 0.89492 1.46009 1.65342 1.14298 1.08618 1.17212 0.77213 0.83683 0.84116 1.90728 1.52317 1.69294 1.31340 1.23684 1.08293 0.97703 0.92053 1.23067 1.05498 0.92475 1.01416 1.27034 1.00057 1.02310 0.81355 1.84773 1.60624 1.23343 1.26256 1.74254 1.14036 0.93108 1.24200 0.91619 0.90999 0.93269 0.97001 0.91920 0.94249 0.99019 0.93172 0.91082 0.93165 0.75753 0.78872 0.70265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.37 9.05 71.98 0.65 -2.72 16 2 C -0.11 -3.41 2.67 -10.72 -0.03 -3.44 16 3 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 4 C 0.15 5.93 5.50 86.36 0.48 6.40 16 5 N -0.61 -30.30 2.99 -699.08 -2.09 -32.39 16 6 C -0.26 -14.38 9.59 84.04 0.81 -13.57 16 7 H 0.07 3.77 7.89 -2.91 -0.02 3.74 16 8 C -0.05 -2.84 4.91 84.86 0.42 -2.43 16 9 N -0.94 -56.53 11.19 21.65 0.24 -56.28 16 10 Si 0.97 45.27 29.59 68.60 2.03 47.30 16 11 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 12 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 13 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 14 C 0.19 9.40 5.05 86.36 0.44 9.84 16 15 C -0.14 -5.87 5.77 30.67 0.18 -5.70 16 16 C 0.16 5.72 2.21 45.02 0.10 5.82 16 17 H 0.09 2.93 7.58 -2.39 -0.02 2.91 16 18 N -0.69 -24.24 3.59 -444.82 -1.60 -25.84 16 19 C 0.59 20.89 7.81 86.93 0.68 21.57 16 20 O -0.56 -21.82 16.61 -3.69 -0.06 -21.88 16 21 C -0.06 -1.78 7.19 42.96 0.31 -1.47 16 22 C -0.20 -4.12 10.99 22.60 0.25 -3.87 16 23 C -0.03 -0.36 12.28 67.14 0.82 0.47 16 24 O 0.13 2.73 11.18 71.80 0.80 3.53 16 25 N -0.36 -10.39 11.84 -49.51 -0.59 -10.97 16 26 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 27 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.05 1.26 7.54 -2.39 -0.02 1.24 16 29 H 0.01 0.49 6.64 -2.39 -0.02 0.48 16 30 H 0.06 2.44 7.93 -2.38 -0.02 2.42 16 31 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 32 H -0.01 -0.45 7.74 -2.39 -0.02 -0.47 16 33 H 0.05 2.88 6.04 -2.39 -0.01 2.86 16 34 H 0.07 2.84 8.14 -2.38 -0.02 2.82 16 35 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.41 14.55 6.49 -92.71 -0.60 13.95 16 37 H 0.19 3.24 8.06 -2.91 -0.02 3.22 16 38 H 0.28 -0.05 8.06 -2.91 -0.02 -0.08 16 Total: -1.00 -72.07 314.31 4.31 -67.76 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: 0.48 Total: 17.88 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: 5.09 Total: 10.90 kcal Atomic # 7 Polarization: -121.45 SS G_CDS: -4.04 Total: -125.48 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: 0.74 Total: -18.35 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -72.07 4.31 -67.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941851401.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.796 kcal (2) G-P(sol) polarization free energy of solvation -72.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds