Wall clock time and date at job start Tue Mar 31 2020 01:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47543 * 2 1 4 4 C 1.50702 * 109.46989 * 239.99331 * 2 1 3 5 5 H 1.07997 * 120.00285 * 239.99812 * 4 2 1 6 6 C 1.37876 * 119.99489 * 60.00739 * 4 2 1 7 7 N 1.31517 * 120.00091 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99822 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46890 * 59.99874 * 8 6 4 10 10 H 1.48503 * 109.46880 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.46943 * 299.99886 * 8 6 4 12 12 N 1.46505 * 109.46812 * 119.99914 * 2 1 3 13 13 C 1.46504 * 120.00149 * 60.00086 * 12 2 1 14 14 C 1.34777 * 120.00115 * 239.99682 * 12 2 1 15 15 O 1.21288 * 119.99593 * 0.02562 * 14 12 2 16 16 C 1.50697 * 120.00369 * 180.02562 * 14 12 2 17 17 C 1.52997 * 109.47466 * 180.02562 * 16 14 12 18 18 C 1.50701 * 109.47212 * 179.97438 * 17 16 14 19 19 C 1.38244 * 119.97486 * 269.72841 * 18 17 16 20 20 C 1.38202 * 120.02338 * 179.72838 * 19 18 17 21 21 C 1.38457 * 119.97200 * 0.56577 * 20 19 18 22 22 F 1.35099 * 120.02649 * 179.68648 * 21 20 19 23 23 C 1.38455 * 119.95159 * 359.70550 * 21 20 19 24 24 C 1.38200 * 119.97412 * 0.02562 * 23 21 20 25 25 H 1.08996 * 109.46816 * 59.99766 * 1 2 3 26 26 H 1.08994 * 109.47543 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47151 * 300.00253 * 1 2 3 28 28 H 0.96998 * 119.99944 * 180.02562 * 7 6 4 29 29 H 1.08996 * 109.46784 * 269.99859 * 13 12 2 30 30 H 1.09003 * 109.47146 * 29.99481 * 13 12 2 31 31 H 1.08994 * 109.47096 * 150.00065 * 13 12 2 32 32 H 1.09002 * 109.47120 * 59.99760 * 16 14 12 33 33 H 1.08998 * 109.46862 * 300.00562 * 16 14 12 34 34 H 1.09002 * 109.47153 * 59.99773 * 17 16 14 35 35 H 1.09001 * 109.46832 * 299.99964 * 17 16 14 36 36 H 1.07996 * 119.98449 * 359.97438 * 19 18 17 37 37 H 1.07995 * 120.01101 * 180.25281 * 20 19 18 38 38 H 1.08001 * 120.01453 * 179.97438 * 23 21 20 39 39 H 1.08008 * 119.98737 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9428 0.8296 -2.6033 8 14 2.3224 -1.1198 -4.0079 9 1 1.8278 -2.5200 -4.0080 10 1 1.8269 -0.4201 -5.2204 11 1 3.8074 -1.1193 -4.0076 12 7 2.0183 -0.6906 1.1962 13 6 1.6643 -2.0932 1.4281 14 6 2.7931 -0.0357 2.0834 15 8 3.0858 1.1256 1.8916 16 6 3.2959 -0.7462 3.3136 17 6 4.1453 0.2156 4.1468 18 6 4.6475 -0.4948 5.3773 19 6 3.9023 -0.4703 6.5415 20 6 4.3592 -1.1262 7.6689 21 6 5.5694 -1.7980 7.6355 22 9 6.0201 -2.4341 8.7389 23 6 6.3176 -1.8170 6.4707 24 6 5.8560 -1.1652 5.3429 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 0.7083 1.1608 -3.4843 29 1 0.7375 -2.1443 1.9994 30 1 1.5293 -2.5969 0.4709 31 1 2.4627 -2.5819 1.9865 32 1 3.9016 -1.6024 3.0167 33 1 2.4483 -1.0891 3.9069 34 1 3.5393 1.0716 4.4438 35 1 4.9929 0.5589 3.5536 36 1 2.9609 0.0581 6.5687 37 1 3.7749 -1.1104 8.5770 38 1 7.2619 -2.3404 6.4437 39 1 6.4397 -1.1795 4.4342 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259727222.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:50 Heat of formation + Delta-G solvation = -68.571332 kcal Electronic energy + Delta-G solvation = -20996.804149 eV Core-core repulsion = 17625.440547 eV Total energy + Delta-G solvation = -3371.363601 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.06236 -39.60738 -38.83041 -35.42106 -33.75957 -32.79925 -31.32546 -30.03436 -28.67617 -26.08986 -25.24333 -24.50840 -23.23684 -21.58326 -20.56226 -18.22740 -17.84203 -16.71503 -16.59862 -16.28473 -15.76664 -15.43451 -15.17716 -15.04390 -14.32604 -14.09609 -13.82958 -13.62638 -13.15347 -13.03423 -12.63534 -12.42232 -12.10621 -11.90143 -11.61428 -11.49196 -11.33138 -11.29425 -11.04814 -10.88748 -10.78749 -10.66861 -10.26718 -10.17307 -9.30818 -9.20511 -8.99204 -8.63771 -8.42723 -7.58728 -6.08104 -4.16381 0.95100 1.03464 3.26769 3.32031 3.32742 3.37671 3.40876 3.97592 4.08161 4.38634 4.52688 4.65299 4.72742 5.06543 5.09445 5.19710 5.23243 5.32268 5.37640 5.62407 5.68659 5.83626 5.88247 5.91897 5.95093 6.05039 6.06083 6.26283 6.36770 6.46412 6.71449 6.75034 6.83227 7.06522 7.42439 7.53519 7.71205 8.01189 8.19779 8.54006 8.82396 9.06418 9.50232 10.97149 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.034254 B = 0.003142 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.215596 B = 8908.934986 C = 9165.295290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.257 3.743 3 H 0.063 0.937 4 C -0.527 4.527 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.594 5.594 13 C 0.083 3.917 14 C 0.501 3.499 15 O -0.555 6.555 16 C -0.133 4.133 17 C -0.066 4.066 18 C -0.083 4.083 19 C -0.088 4.088 20 C -0.152 4.152 21 C 0.086 3.914 22 F -0.144 7.144 23 C -0.152 4.152 24 C -0.088 4.088 25 H 0.093 0.907 26 H 0.029 0.971 27 H 0.010 0.990 28 H 0.264 0.736 29 H 0.042 0.958 30 H 0.080 0.920 31 H 0.054 0.946 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.134 0.866 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.528 -6.300 17.153 19.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.157 3.843 3 H 0.081 0.919 4 C -0.566 4.566 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.325 5.325 13 C -0.061 4.061 14 C 0.288 3.712 15 O -0.435 6.435 16 C -0.173 4.173 17 C -0.104 4.104 18 C -0.084 4.084 19 C -0.106 4.106 20 C -0.171 4.171 21 C 0.067 3.933 22 F -0.123 7.123 23 C -0.170 4.170 24 C -0.106 4.106 25 H 0.111 0.889 26 H 0.048 0.952 27 H 0.029 0.971 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.072 0.928 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.151 0.849 37 H 0.151 0.849 38 H 0.151 0.849 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.586 -5.597 16.915 18.672 hybrid contribution 0.325 -0.825 -0.642 1.095 sum 5.911 -6.421 16.273 18.466 Atomic orbital electron populations 1.22080 0.98265 0.99355 1.00752 1.18921 0.90835 0.94529 0.79999 0.91934 1.21291 1.31905 1.13034 0.90373 0.92320 1.24896 0.94934 0.94974 0.98961 1.69870 1.36259 1.22588 1.23871 0.86555 0.79246 0.79566 0.82011 1.20240 1.21162 1.20233 1.48257 1.49012 1.11624 1.23606 1.21599 0.98771 0.83365 1.02324 1.20410 0.79227 0.87177 0.84372 1.90649 1.58570 1.17215 1.77025 1.21668 1.00659 0.99460 0.95527 1.20369 1.00538 0.97182 0.92303 1.20129 0.94585 0.97910 0.95745 1.20995 0.99843 0.98219 0.91578 1.21136 0.95670 0.99953 1.00311 1.17728 0.94856 0.97234 0.83525 1.91485 1.89122 1.80007 1.51692 1.21145 1.01017 1.02605 0.92272 1.21014 0.95736 0.95942 0.97901 0.88877 0.95204 0.97070 0.92616 0.93943 0.90164 0.92776 0.89359 0.89523 0.89964 0.89873 0.84854 0.84892 0.84872 0.84796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 8.97 37.16 0.33 -3.15 16 2 C 0.26 6.53 2.64 -69.08 -0.18 6.35 16 3 H 0.06 1.85 6.90 -51.93 -0.36 1.49 16 4 C -0.53 -14.14 7.99 -34.44 -0.28 -14.42 16 5 H 0.06 1.54 7.33 -52.49 -0.38 1.15 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.05 11.32 55.43 0.63 -24.42 16 8 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 N -0.59 -12.39 2.75 -175.26 -0.48 -12.87 16 13 C 0.08 1.36 9.24 59.85 0.55 1.91 16 14 C 0.50 9.91 7.67 -10.99 -0.08 9.83 16 15 O -0.56 -13.21 15.31 5.55 0.08 -13.13 16 16 C -0.13 -1.82 4.23 -27.89 -0.12 -1.93 16 17 C -0.07 -0.83 4.63 -27.88 -0.13 -0.96 16 18 C -0.08 -0.89 5.13 -104.62 -0.54 -1.43 16 19 C -0.09 -0.86 9.70 -39.59 -0.38 -1.24 16 20 C -0.15 -1.45 10.03 -39.51 -0.40 -1.84 16 21 C 0.09 0.89 7.30 -39.42 -0.29 0.61 16 22 F -0.14 -1.60 17.27 2.25 0.04 -1.56 16 23 C -0.15 -1.47 10.03 -39.52 -0.40 -1.86 16 24 C -0.09 -0.87 9.70 -39.59 -0.38 -1.26 16 25 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 26 H 0.03 0.65 7.67 -51.93 -0.40 0.25 16 27 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.08 1.41 7.02 -51.93 -0.36 1.04 16 31 H 0.05 0.71 6.44 -51.93 -0.33 0.37 16 32 H 0.09 1.08 7.40 -51.93 -0.38 0.70 16 33 H 0.09 1.03 8.11 -51.93 -0.42 0.61 16 34 H 0.08 1.08 8.04 -51.93 -0.42 0.66 16 35 H 0.08 1.12 8.04 -51.93 -0.42 0.70 16 36 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 37 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 38 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 39 H 0.13 1.16 8.06 -52.48 -0.42 0.73 16 LS Contribution 329.91 15.07 4.97 4.97 Total: -1.00 -30.89 329.91 -7.63 -38.52 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -5.47 Total: 0.38 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: -2.38 Total: -7.74 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: 0.14 Total: -37.29 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.08 Total: -13.13 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.89 -7.63 -38.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259727222.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.054 kcal (2) G-P(sol) polarization free energy of solvation -30.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds