Wall clock time and date at job start Tue Mar 31 2020 00:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47190 * 2 1 4 4 C 1.50694 * 109.47453 * 239.99469 * 2 1 3 5 5 C 1.38215 * 120.01777 * 264.73070 * 4 2 1 6 6 C 1.38216 * 120.02937 * 180.27543 * 5 4 2 7 7 C 1.38267 * 120.05121 * 359.97438 * 6 5 4 8 8 C 1.38172 * 120.02673 * 0.02562 * 7 6 5 9 9 C 1.38445 * 120.01153 * 85.00054 * 4 2 1 10 10 F 1.35099 * 120.02106 * 359.70676 * 9 4 2 11 11 N 1.46907 * 109.47100 * 119.99722 * 2 1 3 12 12 C 1.47443 * 111.00181 * 179.87443 * 11 2 1 13 13 C 1.54319 * 107.23261 * 123.25774 * 12 11 2 14 14 C 1.55140 * 103.02076 * 22.28272 * 13 12 11 15 15 O 1.42901 * 110.99059 * 82.47194 * 14 13 12 16 16 C 1.50692 * 110.99150 * 206.25554 * 14 13 12 17 17 H 1.08002 * 120.00424 * 118.54791 * 16 14 13 18 18 C 1.37882 * 119.99917 * 298.54448 * 16 14 13 19 19 N 1.31513 * 120.00117 * 0.02562 * 18 16 14 20 20 Si 1.86797 * 119.99787 * 179.97438 * 18 16 14 21 21 H 1.48507 * 109.47240 * 90.00273 * 20 18 16 22 22 H 1.48500 * 109.47061 * 210.00149 * 20 18 16 23 23 H 1.48495 * 109.47588 * 330.00111 * 20 18 16 24 24 C 1.47850 * 110.99743 * 300.71585 * 11 2 1 25 25 H 1.09004 * 109.47193 * 300.00606 * 1 2 3 26 26 H 1.09007 * 109.46983 * 60.00169 * 1 2 3 27 27 H 1.08993 * 109.47497 * 180.02562 * 1 2 3 28 28 H 1.08001 * 119.98427 * 0.26811 * 5 4 2 29 29 H 1.08009 * 119.97709 * 179.97438 * 6 5 4 30 30 H 1.08003 * 119.98952 * 180.02562 * 7 6 5 31 31 H 1.08003 * 120.01752 * 180.02562 * 8 7 6 32 32 H 1.09001 * 109.88452 * 242.66451 * 12 11 2 33 33 H 1.09000 * 109.88663 * 3.85296 * 12 11 2 34 34 H 1.09004 * 110.70353 * 140.66638 * 13 12 11 35 35 H 1.08996 * 110.70519 * 263.90255 * 13 12 11 36 36 H 0.96709 * 113.99532 * 61.45772 * 15 14 13 37 37 H 0.96997 * 120.00243 * 179.97438 * 19 18 16 38 38 H 1.08993 * 110.37524 * 332.46504 * 24 11 2 39 39 H 1.09001 * 110.36797 * 94.80866 * 24 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 6 2.3665 -2.0501 -1.1672 6 6 2.8327 -2.7006 -2.2941 7 6 2.9649 -2.0123 -3.4859 8 6 2.6315 -0.6730 -3.5516 9 6 2.1647 -0.0202 -2.4231 10 9 1.8380 1.2892 -2.4861 11 7 2.0197 -0.6925 1.1995 12 6 3.4936 -0.7148 1.2321 13 6 3.9315 -0.0573 2.5578 14 6 2.6765 -0.2128 3.4565 15 8 2.6309 -1.5112 4.0516 16 6 2.6307 0.8630 4.5106 17 1 1.8066 1.5606 4.5349 18 6 3.6410 0.9568 5.4443 19 7 4.6448 0.1076 5.4146 20 14 3.5845 2.2908 6.7506 21 1 2.8646 1.7829 7.9461 22 1 4.9690 2.6704 7.1306 23 1 2.8751 3.4798 6.2137 24 6 1.5315 -0.0320 2.4289 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 2.2634 -2.5889 -0.2368 29 1 3.0940 -3.7474 -2.2437 30 1 3.3289 -2.5217 -4.3660 31 1 2.7345 -0.1356 -4.4827 32 1 3.8497 -1.7442 1.1933 33 1 3.8917 -0.1503 0.3889 34 1 4.7817 -0.5866 2.9880 35 1 4.1685 0.9957 2.4058 36 1 3.3817 -1.7057 4.6292 37 1 5.3557 0.1738 6.0712 38 1 1.3508 1.0270 2.2446 39 1 0.6224 -0.5167 2.7846 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592148564.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:42:43 Heat of formation + Delta-G solvation = -64.785653 kcal Electronic energy + Delta-G solvation = -22400.114837 eV Core-core repulsion = 19028.915395 eV Total energy + Delta-G solvation = -3371.199442 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.80754 -39.56753 -38.02723 -35.27089 -32.44582 -32.12352 -30.56048 -29.75003 -28.17523 -27.46308 -24.91397 -23.43283 -22.40883 -21.14072 -19.71986 -19.35010 -17.49535 -17.03537 -16.37031 -15.85694 -15.49808 -15.16012 -14.89282 -14.42844 -14.20191 -14.03966 -13.64000 -13.10695 -13.01470 -12.66107 -12.28149 -12.15563 -12.02436 -11.72509 -11.66880 -11.29273 -11.23202 -11.13855 -10.97651 -10.76557 -10.49150 -10.39151 -10.22239 -9.85172 -9.19118 -8.84704 -8.59372 -8.57953 -8.07407 -7.65214 -6.20986 -4.29062 1.21038 1.30162 3.22348 3.29455 3.32554 3.66327 4.25764 4.32263 4.50840 4.72781 4.88921 5.05088 5.07488 5.29376 5.40220 5.52208 5.56370 5.67881 5.86916 5.89496 5.99611 6.08462 6.10412 6.13510 6.20445 6.22548 6.40867 6.44647 6.49658 6.58455 6.68034 6.87126 6.97373 7.08243 7.42154 7.49567 7.61472 7.74069 7.82520 8.17021 8.73244 9.39534 9.51721 10.85955 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.029233 B = 0.004618 C = 0.004426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.589144 B = 6062.326791 C = 6325.114142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.113 3.887 3 H 0.049 0.951 4 C -0.101 4.101 5 C -0.064 4.064 6 C -0.136 4.136 7 C -0.100 4.100 8 C -0.161 4.161 9 C 0.095 3.905 10 F -0.141 7.141 11 N -0.519 5.519 12 C 0.044 3.956 13 C -0.145 4.145 14 C 0.252 3.748 15 O -0.579 6.579 16 C -0.536 4.536 17 H 0.060 0.940 18 C 0.072 3.928 19 N -0.895 5.895 20 Si 0.898 3.102 21 H -0.278 1.278 22 H -0.285 1.285 23 H -0.274 1.274 24 C 0.061 3.939 25 H 0.064 0.936 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.148 0.852 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.130 0.870 32 H 0.066 0.934 33 H 0.035 0.965 34 H 0.077 0.923 35 H 0.054 0.946 36 H 0.377 0.623 37 H 0.266 0.734 38 H 0.047 0.953 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.777 -3.169 -14.754 15.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.004 3.996 3 H 0.067 0.933 4 C -0.103 4.103 5 C -0.083 4.083 6 C -0.154 4.154 7 C -0.119 4.119 8 C -0.180 4.180 9 C 0.075 3.925 10 F -0.120 7.120 11 N -0.244 5.244 12 C -0.083 4.083 13 C -0.184 4.184 14 C 0.212 3.788 15 O -0.387 6.387 16 C -0.575 4.575 17 H 0.079 0.921 18 C -0.130 4.130 19 N -0.534 5.534 20 Si 0.726 3.274 21 H -0.204 1.204 22 H -0.211 1.211 23 H -0.198 1.198 24 C -0.065 4.065 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.165 0.835 29 H 0.145 0.855 30 H 0.145 0.855 31 H 0.148 0.852 32 H 0.084 0.916 33 H 0.053 0.947 34 H 0.096 0.904 35 H 0.073 0.927 36 H 0.226 0.774 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.378 -3.696 -15.040 15.852 hybrid contribution 0.976 1.943 0.946 2.371 sum -2.402 -1.753 -14.095 14.405 Atomic orbital electron populations 1.21795 0.93402 1.02610 1.01681 1.20615 0.95749 0.94895 0.88306 0.93283 1.19991 1.01351 0.95245 0.93664 1.21198 0.94831 0.93026 0.99200 1.21272 1.00856 1.00408 0.92840 1.20951 0.99274 0.93391 0.98246 1.21025 1.03461 0.95904 0.97569 1.17614 1.01747 0.78318 0.94829 1.91471 1.90391 1.33108 1.96997 1.63659 1.08931 1.50800 1.00990 1.22843 0.87218 1.00155 0.98114 1.23262 1.01741 0.99415 0.93947 1.19525 0.88275 0.82149 0.88853 1.86139 1.50906 1.35254 1.66355 1.21548 1.07699 1.14598 1.13653 0.92144 1.24987 0.94725 0.95951 0.97344 1.69734 1.10794 1.36819 1.36046 0.86493 0.77299 0.81867 0.81740 1.20414 1.21123 1.19846 1.22984 0.99436 0.95771 0.88349 0.91712 0.92771 0.91696 0.83457 0.85546 0.85530 0.85226 0.91595 0.94670 0.90410 0.92726 0.77441 0.92399 0.93446 0.90969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.06 37.16 0.34 -1.69 16 2 C 0.11 1.89 1.65 -68.86 -0.11 1.78 16 3 H 0.05 0.89 7.76 -51.93 -0.40 0.48 16 4 C -0.10 -1.53 4.07 -104.56 -0.43 -1.95 16 5 C -0.06 -0.90 8.40 -39.60 -0.33 -1.23 16 6 C -0.14 -1.55 10.04 -39.58 -0.40 -1.95 16 7 C -0.10 -1.06 10.04 -39.60 -0.40 -1.46 16 8 C -0.16 -1.89 10.03 -39.52 -0.40 -2.29 16 9 C 0.09 1.35 7.24 -39.42 -0.29 1.07 16 10 F -0.14 -2.13 16.57 2.25 0.04 -2.09 16 11 N -0.52 -9.86 4.08 -224.67 -0.92 -10.78 16 12 C 0.04 0.87 5.30 -2.84 -0.02 0.85 16 13 C -0.14 -3.34 5.37 -24.91 -0.13 -3.47 16 14 C 0.25 6.22 0.87 -89.64 -0.08 6.14 16 15 O -0.58 -14.96 13.16 -35.23 -0.46 -15.42 16 16 C -0.54 -14.36 8.27 -34.44 -0.28 -14.64 16 17 H 0.06 1.61 7.79 -52.49 -0.41 1.20 16 18 C 0.07 1.91 5.29 -17.82 -0.09 1.82 16 19 N -0.89 -23.82 10.75 55.43 0.60 -23.22 16 20 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 24 C 0.06 1.32 4.57 -2.30 -0.01 1.31 16 25 H 0.06 0.96 7.04 -51.93 -0.37 0.60 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.15 2.20 6.86 -52.49 -0.36 1.83 16 29 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 30 H 0.13 0.97 8.06 -52.48 -0.42 0.54 16 31 H 0.13 1.25 8.06 -52.48 -0.42 0.82 16 32 H 0.07 1.27 7.86 -51.93 -0.41 0.86 16 33 H 0.03 0.66 7.04 -51.93 -0.37 0.30 16 34 H 0.08 1.90 7.54 -51.93 -0.39 1.51 16 35 H 0.05 1.31 8.03 -51.93 -0.42 0.89 16 36 H 0.38 9.81 7.56 45.56 0.34 10.16 16 37 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 38 H 0.05 1.01 7.47 -51.93 -0.39 0.62 16 39 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 LS Contribution 317.48 15.07 4.78 4.78 Total: -1.00 -27.37 317.48 -8.45 -35.81 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -4.83 Total: 11.00 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: -2.63 Total: -15.73 kcal Atomic # 7 Polarization: -33.68 SS G_CDS: -0.32 Total: -34.00 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -0.46 Total: -15.42 kcal Atomic # 9 Polarization: -2.13 SS G_CDS: 0.04 Total: -2.09 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -27.37 -8.45 -35.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592148564.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.973 kcal (2) G-P(sol) polarization free energy of solvation -27.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds