Wall clock time and date at job start Tue Mar 31 2020 01:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47401 * 2 1 4 4 C 1.50697 * 109.47074 * 120.00844 * 2 1 3 5 5 H 1.08004 * 120.00153 * 119.99674 * 4 2 1 6 6 C 1.37878 * 119.99896 * 299.99568 * 4 2 1 7 7 N 1.31517 * 119.99683 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00054 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47004 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.46896 * 119.99944 * 8 6 4 11 11 H 1.48502 * 109.47006 * 239.99950 * 8 6 4 12 12 N 1.46500 * 109.46739 * 240.00393 * 2 1 3 13 13 C 1.46500 * 120.00261 * 300.00239 * 12 2 1 14 14 C 1.34783 * 119.99943 * 120.00467 * 12 2 1 15 15 O 1.21568 * 119.99821 * 359.97438 * 14 12 2 16 16 N 1.34771 * 119.99657 * 179.97438 * 14 12 2 17 17 C 1.38818 * 119.99581 * 174.95231 * 16 14 12 18 18 C 1.41034 * 120.52723 * 302.63465 * 17 16 14 19 19 C 1.34990 * 119.79100 * 179.80149 * 18 17 16 20 20 N 1.35917 * 120.89275 * 0.46344 * 19 18 17 21 21 C 1.46501 * 119.44651 * 179.75371 * 20 19 18 22 22 C 1.34580 * 121.10297 * 359.76888 * 20 19 18 23 23 O 1.22124 * 119.92533 * 179.97438 * 22 20 19 24 24 C 1.38411 * 120.52409 * 122.91329 * 17 16 14 25 25 H 1.09004 * 109.47405 * 59.99325 * 1 2 3 26 26 H 1.09001 * 109.47629 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47061 * 299.99917 * 1 2 3 28 28 H 0.97002 * 119.99439 * 180.02562 * 7 6 4 29 29 H 1.08994 * 109.47330 * 89.99927 * 13 12 2 30 30 H 1.08999 * 109.47047 * 210.00319 * 13 12 2 31 31 H 1.09000 * 109.46817 * 329.99786 * 13 12 2 32 32 H 0.96995 * 120.00853 * 354.95339 * 16 14 12 33 33 H 1.08001 * 120.10492 * 0.02562 * 18 17 16 34 34 H 1.08002 * 119.55298 * 180.18344 * 19 18 17 35 35 H 1.09003 * 109.46916 * 270.01270 * 21 20 19 36 36 H 1.08999 * 109.47414 * 30.01728 * 21 20 19 37 37 H 1.09003 * 109.47413 * 150.02023 * 21 20 19 38 38 H 1.08004 * 120.44638 * 359.95476 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 1.2303 5 1 2.6532 -1.5887 1.1311 6 6 1.6993 -0.2396 2.4827 7 7 0.9428 0.8294 2.6034 8 14 2.3225 -1.1200 4.0078 9 1 3.1473 -2.2868 3.6035 10 1 3.1473 -0.1863 4.8160 11 1 1.1677 -1.5871 4.8163 12 7 2.0182 -0.6905 -1.1962 13 6 1.6642 -2.0931 -1.4282 14 6 2.7932 -0.0355 -2.0834 15 8 3.0866 1.1285 -1.8911 16 7 3.2427 -0.6710 -3.1836 17 6 3.9523 0.0303 -4.1489 18 6 3.3850 1.1589 -4.7762 19 6 4.0898 1.8323 -5.7100 20 7 5.3398 1.4324 -6.0636 21 6 6.0743 2.1835 -7.0848 22 6 5.9139 0.3580 -5.4916 23 8 7.0380 0.0175 -5.8260 24 6 5.2255 -0.3704 -4.5150 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.7088 1.1609 3.4845 29 1 0.7374 -2.1442 -1.9995 30 1 2.4627 -2.5817 -1.9866 31 1 1.5294 -2.5968 -0.4711 32 1 3.0705 -1.6183 -3.3010 33 1 2.3912 1.4856 -4.5077 34 1 3.6528 2.6977 -6.1859 35 1 5.8569 1.7673 -8.0685 36 1 5.7684 3.2293 -7.0570 37 1 7.1442 2.1125 -6.8887 38 1 5.6818 -1.2334 -4.0529 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603026708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:03 Heat of formation + Delta-G solvation = -12.112776 kcal Electronic energy + Delta-G solvation = -21713.037098 eV Core-core repulsion = 18364.041685 eV Total energy + Delta-G solvation = -3348.995413 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.33378 -39.77794 -36.98334 -36.03475 -35.05348 -33.19240 -32.14875 -29.90996 -29.24974 -27.18647 -26.19000 -25.25073 -23.84066 -23.02284 -21.05385 -19.44727 -18.07900 -17.48447 -17.22795 -16.89946 -16.22038 -15.99276 -15.39935 -14.94025 -14.72426 -14.20631 -14.09618 -13.37341 -13.21188 -13.11359 -12.96176 -12.60400 -12.53050 -12.02064 -11.80191 -11.67549 -11.54992 -11.09692 -10.87663 -10.73535 -10.37731 -10.28581 -10.20086 -10.08632 -9.49752 -9.19188 -8.87166 -8.46505 -7.97432 -7.65596 -6.10550 -4.18350 0.76452 1.89073 2.62182 3.07438 3.24814 3.33357 3.36429 3.56174 3.80004 4.31067 4.41598 4.54012 4.61417 5.04214 5.12626 5.19319 5.21274 5.29949 5.44946 5.50672 5.62210 5.91366 6.02683 6.19524 6.26817 6.29682 6.64569 6.75175 6.88004 6.97988 7.05244 7.08127 7.40168 7.64334 7.74592 8.01782 8.06192 8.16903 8.54535 8.82175 9.12306 9.48653 10.94841 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.030304 B = 0.003818 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.753843 B = 7332.024527 C = 7518.507054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.272 3.728 3 H 0.065 0.935 4 C -0.527 4.527 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.602 5.602 13 C 0.083 3.917 14 C 0.699 3.301 15 O -0.576 6.576 16 N -0.706 5.706 17 C 0.285 3.715 18 C -0.210 4.210 19 C 0.134 3.866 20 N -0.505 5.505 21 C 0.061 3.939 22 C 0.525 3.475 23 O -0.565 6.565 24 C -0.279 4.279 25 H 0.011 0.989 26 H 0.030 0.970 27 H 0.094 0.906 28 H 0.263 0.737 29 H 0.045 0.955 30 H 0.047 0.953 31 H 0.086 0.914 32 H 0.407 0.593 33 H 0.148 0.852 34 H 0.165 0.835 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.371 -0.751 -17.144 17.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.172 3.828 3 H 0.083 0.917 4 C -0.566 4.566 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.336 5.336 13 C -0.061 4.061 14 C 0.401 3.599 15 O -0.453 6.453 16 N -0.360 5.360 17 C 0.185 3.815 18 C -0.234 4.234 19 C 0.007 3.993 20 N -0.217 5.217 21 C -0.080 4.080 22 C 0.328 3.672 23 O -0.449 6.449 24 C -0.304 4.304 25 H 0.030 0.970 26 H 0.049 0.951 27 H 0.113 0.887 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.104 0.896 32 H 0.246 0.754 33 H 0.166 0.834 34 H 0.182 0.818 35 H 0.091 0.909 36 H 0.102 0.898 37 H 0.111 0.889 38 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.152 0.010 -16.988 17.124 hybrid contribution 0.039 -1.001 0.945 1.377 sum 2.191 -0.991 -16.043 16.222 Atomic orbital electron populations 1.22099 0.98057 0.99445 1.00858 1.18925 0.90718 0.94331 0.78858 0.91694 1.21370 1.31841 1.13120 0.90286 0.92157 1.24884 0.94901 0.94977 0.98972 1.69887 1.36332 1.22582 1.23715 0.86430 0.78590 0.79603 0.82709 1.19812 1.20881 1.20932 1.47626 1.50446 1.11643 1.23907 1.21570 0.98369 0.83399 1.02765 1.15935 0.79488 0.85011 0.79419 1.90917 1.62289 1.15438 1.76630 1.42829 1.59220 1.13171 1.20790 1.17867 0.88777 0.89936 0.84922 1.20800 1.02904 0.99485 1.00247 1.21673 0.83922 0.98003 0.95681 1.45395 1.14644 1.26614 1.35068 1.22100 0.99352 0.95993 0.90593 1.16581 0.87049 0.80467 0.83064 1.90947 1.19248 1.69083 1.65631 1.22261 0.94234 1.07533 1.06376 0.96969 0.95135 0.88713 0.92694 0.93658 0.93484 0.89550 0.75392 0.83407 0.81760 0.90855 0.89844 0.88927 0.83337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.37 8.97 37.16 0.33 -3.03 16 2 C 0.27 6.75 2.64 -69.08 -0.18 6.57 16 3 H 0.07 1.88 6.90 -51.93 -0.36 1.53 16 4 C -0.53 -13.96 7.99 -34.44 -0.28 -14.23 16 5 H 0.06 1.58 7.33 -52.48 -0.38 1.19 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -24.65 11.32 55.43 0.63 -24.02 16 8 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 9 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 N -0.60 -12.34 2.75 -181.02 -0.50 -12.83 16 13 C 0.08 1.30 9.24 59.85 0.55 1.85 16 14 C 0.70 14.18 8.08 -86.92 -0.70 13.48 16 15 O -0.58 -14.01 15.06 5.31 0.08 -13.93 16 16 N -0.71 -10.84 5.13 -14.08 -0.07 -10.92 16 17 C 0.29 4.21 5.75 -83.57 -0.48 3.73 16 18 C -0.21 -2.68 8.99 -39.68 -0.36 -3.03 16 19 C 0.13 1.33 10.26 -16.90 -0.17 1.15 16 20 N -0.51 -5.82 2.99 -127.46 -0.38 -6.20 16 21 C 0.06 0.48 10.34 59.85 0.62 1.10 16 22 C 0.53 8.03 7.38 -15.71 -0.12 7.92 16 23 O -0.56 -10.29 16.61 4.81 0.08 -10.21 16 24 C -0.28 -4.18 9.96 -38.88 -0.39 -4.57 16 25 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 26 H 0.03 0.64 7.67 -51.93 -0.40 0.25 16 27 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 28 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.58 6.29 -51.93 -0.33 0.25 16 31 H 0.09 1.45 7.02 -51.93 -0.36 1.09 16 32 H 0.41 4.98 6.52 -40.82 -0.27 4.71 16 33 H 0.15 1.88 8.06 -52.49 -0.42 1.46 16 34 H 0.17 0.91 8.03 -52.49 -0.42 0.49 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.40 8.00 -51.93 -0.42 -0.02 16 37 H 0.09 0.86 7.37 -51.93 -0.38 0.48 16 38 H 0.15 2.16 8.06 -52.48 -0.42 1.74 16 LS Contribution 319.67 15.07 4.82 4.82 Total: -1.00 -34.59 319.67 -6.51 -41.10 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -4.88 Total: 3.82 kcal Atomic # 6 Polarization: 13.85 SS G_CDS: -1.26 Total: 12.58 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: -0.32 Total: -53.97 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: 0.16 Total: -24.14 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -34.59 -6.51 -41.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603026708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.987 kcal (2) G-P(sol) polarization free energy of solvation -34.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds