Wall clock time and date at job start Tue Mar 31 2020 01:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47401 * 2 1 4 4 C 1.50697 * 109.47074 * 120.00844 * 2 1 3 5 5 H 1.08004 * 120.00153 * 119.99674 * 4 2 1 6 6 C 1.37878 * 119.99896 * 299.99568 * 4 2 1 7 7 N 1.31517 * 119.99683 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00054 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47004 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.46896 * 119.99944 * 8 6 4 11 11 H 1.48502 * 109.47006 * 239.99950 * 8 6 4 12 12 N 1.46500 * 109.46739 * 240.00393 * 2 1 3 13 13 C 1.46500 * 120.00261 * 300.00239 * 12 2 1 14 14 C 1.34783 * 119.99943 * 120.00467 * 12 2 1 15 15 O 1.21568 * 119.99821 * 359.97438 * 14 12 2 16 16 N 1.34771 * 119.99657 * 179.97438 * 14 12 2 17 17 C 1.38818 * 119.99581 * 174.95231 * 16 14 12 18 18 C 1.41034 * 120.52723 * 302.63465 * 17 16 14 19 19 C 1.34990 * 119.79100 * 179.80149 * 18 17 16 20 20 N 1.35917 * 120.89275 * 0.46344 * 19 18 17 21 21 C 1.46501 * 119.44651 * 179.75371 * 20 19 18 22 22 C 1.34580 * 121.10297 * 359.76888 * 20 19 18 23 23 O 1.22124 * 119.92533 * 179.97438 * 22 20 19 24 24 C 1.38411 * 120.52409 * 122.91329 * 17 16 14 25 25 H 1.09004 * 109.47405 * 59.99325 * 1 2 3 26 26 H 1.09001 * 109.47629 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47061 * 299.99917 * 1 2 3 28 28 H 0.97002 * 119.99439 * 180.02562 * 7 6 4 29 29 H 1.08994 * 109.47330 * 89.99927 * 13 12 2 30 30 H 1.08999 * 109.47047 * 210.00319 * 13 12 2 31 31 H 1.09000 * 109.46817 * 329.99786 * 13 12 2 32 32 H 0.96995 * 120.00853 * 354.95339 * 16 14 12 33 33 H 1.08001 * 120.10492 * 0.02562 * 18 17 16 34 34 H 1.08002 * 119.55298 * 180.18344 * 19 18 17 35 35 H 1.09003 * 109.46916 * 270.01270 * 21 20 19 36 36 H 1.08999 * 109.47414 * 30.01728 * 21 20 19 37 37 H 1.09003 * 109.47413 * 150.02023 * 21 20 19 38 38 H 1.08004 * 120.44638 * 359.95476 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 1.2303 5 1 2.6532 -1.5887 1.1311 6 6 1.6993 -0.2396 2.4827 7 7 0.9428 0.8294 2.6034 8 14 2.3225 -1.1200 4.0078 9 1 3.1473 -2.2868 3.6035 10 1 3.1473 -0.1863 4.8160 11 1 1.1677 -1.5871 4.8163 12 7 2.0182 -0.6905 -1.1962 13 6 1.6642 -2.0931 -1.4282 14 6 2.7932 -0.0355 -2.0834 15 8 3.0866 1.1285 -1.8911 16 7 3.2427 -0.6710 -3.1836 17 6 3.9523 0.0303 -4.1489 18 6 3.3850 1.1589 -4.7762 19 6 4.0898 1.8323 -5.7100 20 7 5.3398 1.4324 -6.0636 21 6 6.0743 2.1835 -7.0848 22 6 5.9139 0.3580 -5.4916 23 8 7.0380 0.0175 -5.8260 24 6 5.2255 -0.3704 -4.5150 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.7088 1.1609 3.4845 29 1 0.7374 -2.1442 -1.9995 30 1 2.4627 -2.5817 -1.9866 31 1 1.5294 -2.5968 -0.4711 32 1 3.0705 -1.6183 -3.3010 33 1 2.3912 1.4856 -4.5077 34 1 3.6528 2.6977 -6.1859 35 1 5.8569 1.7673 -8.0685 36 1 5.7684 3.2293 -7.0570 37 1 7.1442 2.1125 -6.8887 38 1 5.6818 -1.2334 -4.0529 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603026708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:02 Heat of formation + Delta-G solvation = -35.997879 kcal Electronic energy + Delta-G solvation = -21714.072834 eV Core-core repulsion = 18364.041685 eV Total energy + Delta-G solvation = -3350.031149 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.42371 -41.25118 -38.25679 -37.40917 -36.58913 -34.92338 -33.50236 -31.20260 -30.78670 -28.11601 -27.55318 -27.26951 -24.86359 -24.34293 -22.57385 -20.99119 -19.46737 -18.68877 -18.46979 -18.20155 -17.85789 -17.06384 -16.94047 -16.38782 -16.23829 -15.81115 -15.12907 -14.98289 -14.44482 -14.21765 -14.09770 -14.02986 -13.57290 -13.47894 -13.12013 -13.02963 -12.92979 -12.71750 -12.69394 -12.57206 -12.18453 -12.10367 -11.52844 -11.35709 -11.15507 -11.06189 -10.51232 -10.13568 -9.31383 -9.02066 -8.13525 -6.29071 -0.28308 0.81690 1.41691 1.43971 1.53974 1.64209 1.77605 2.10701 2.42839 2.61722 3.01915 3.15143 3.74613 3.79475 4.15098 4.22005 4.32068 4.45576 4.50240 4.53541 4.70128 4.75545 4.83363 4.94112 5.00263 5.01269 5.08711 5.20401 5.31730 5.45581 5.52994 5.66584 5.71853 5.95328 6.03915 6.16660 6.21280 6.78466 6.95319 7.02105 7.37336 7.58824 8.90880 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.030304 B = 0.003818 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.753843 B = 7332.024527 C = 7518.507054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.278 3.722 3 H 0.013 0.987 4 C -0.539 4.539 5 H 0.060 0.940 6 C 0.017 3.983 7 N -0.915 5.915 8 Si 0.962 3.038 9 H -0.267 1.267 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.609 5.609 13 C 0.078 3.922 14 C 0.699 3.301 15 O -0.624 6.624 16 N -0.687 5.687 17 C 0.279 3.721 18 C -0.239 4.239 19 C 0.169 3.831 20 N -0.499 5.499 21 C 0.054 3.946 22 C 0.513 3.487 23 O -0.606 6.606 24 C -0.301 4.301 25 H 0.023 0.977 26 H 0.047 0.953 27 H 0.068 0.932 28 H 0.264 0.736 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.422 0.578 33 H 0.149 0.851 34 H 0.222 0.778 35 H 0.093 0.907 36 H 0.125 0.875 37 H 0.073 0.927 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.867 -0.994 -18.696 18.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.176 3.824 3 H 0.031 0.969 4 C -0.578 4.578 5 H 0.078 0.922 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.788 3.212 9 H -0.191 1.191 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.343 5.343 13 C -0.064 4.064 14 C 0.401 3.599 15 O -0.504 6.504 16 N -0.342 5.342 17 C 0.179 3.821 18 C -0.263 4.263 19 C 0.042 3.958 20 N -0.208 5.208 21 C -0.086 4.086 22 C 0.318 3.682 23 O -0.494 6.494 24 C -0.325 4.325 25 H 0.042 0.958 26 H 0.066 0.934 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.264 0.736 33 H 0.166 0.834 34 H 0.239 0.761 35 H 0.112 0.888 36 H 0.143 0.857 37 H 0.092 0.908 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.638 -0.280 -18.600 18.674 hybrid contribution 0.193 -0.845 1.316 1.576 sum 1.831 -1.125 -17.284 17.417 Atomic orbital electron populations 1.21871 0.96758 1.00221 1.00111 1.18496 0.91607 0.92016 0.80308 0.96880 1.21635 1.31817 1.13115 0.91225 0.92186 1.25671 0.95101 0.95642 1.01828 1.70018 1.37257 1.23779 1.24349 0.85448 0.78199 0.78466 0.79125 1.19126 1.21325 1.19918 1.47470 1.50538 1.13416 1.22846 1.21833 1.00965 0.80533 1.03111 1.16015 0.79209 0.84506 0.80187 1.90875 1.63931 1.17677 1.77885 1.42470 1.58331 1.13790 1.19607 1.18111 0.88702 0.90673 0.84639 1.20922 1.03682 0.99832 1.01911 1.22437 0.82325 0.97766 0.93306 1.45551 1.15164 1.25472 1.34653 1.22445 0.98056 0.97945 0.90199 1.16650 0.86684 0.81513 0.83385 1.90915 1.20832 1.70556 1.67131 1.22194 0.94668 1.08207 1.07458 0.95775 0.93418 0.91333 0.92630 0.91042 0.90067 0.90696 0.73588 0.83366 0.76116 0.88825 0.85714 0.90780 0.83968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.06 8.97 71.98 0.65 -5.41 16 2 C 0.28 14.06 2.64 44.24 0.12 14.18 16 3 H 0.01 0.80 6.90 -2.39 -0.02 0.79 16 4 C -0.54 -28.81 7.99 25.60 0.20 -28.60 16 5 H 0.06 3.13 7.33 -2.91 -0.02 3.11 16 6 C 0.02 0.94 5.30 84.65 0.45 1.39 16 7 N -0.92 -51.82 11.32 21.45 0.24 -51.57 16 8 Si 0.96 42.73 29.54 68.60 2.03 44.76 16 9 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 10 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 11 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 12 N -0.61 -24.81 2.75 -844.88 -2.33 -27.13 16 13 C 0.08 2.28 9.24 127.77 1.18 3.46 16 14 C 0.70 28.41 8.08 179.05 1.45 29.86 16 15 O -0.62 -31.10 15.06 -3.93 -0.06 -31.16 16 16 N -0.69 -20.62 5.13 -316.72 -1.63 -22.25 16 17 C 0.28 8.07 5.75 38.76 0.22 8.29 16 18 C -0.24 -5.70 8.99 22.21 0.20 -5.50 16 19 C 0.17 2.76 10.26 83.31 0.85 3.62 16 20 N -0.50 -10.29 2.99 -675.32 -2.02 -12.30 16 21 C 0.05 0.67 10.34 127.77 1.32 1.99 16 22 C 0.51 15.53 7.38 84.68 0.63 16.16 16 23 O -0.61 -22.44 16.61 -5.72 -0.10 -22.53 16 24 C -0.30 -9.07 9.96 22.72 0.23 -8.84 16 25 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.05 1.99 7.67 -2.39 -0.02 1.97 16 27 H 0.07 3.55 6.07 -2.39 -0.01 3.54 16 28 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 29 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.08 1.79 6.29 -2.39 -0.02 1.77 16 31 H 0.07 2.40 7.02 -2.39 -0.02 2.38 16 32 H 0.42 9.67 6.52 -92.71 -0.60 9.07 16 33 H 0.15 3.56 8.06 -2.91 -0.02 3.53 16 34 H 0.22 1.09 8.03 -2.91 -0.02 1.06 16 35 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.12 0.56 8.00 -2.39 -0.02 0.54 16 37 H 0.07 1.27 7.37 -2.39 -0.02 1.25 16 38 H 0.14 4.29 8.06 -2.91 -0.02 4.27 16 Total: -1.00 -79.39 319.67 4.12 -75.27 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: 0.48 Total: 16.34 kcal Atomic # 6 Polarization: 23.09 SS G_CDS: 7.49 Total: 30.59 kcal Atomic # 7 Polarization: -107.53 SS G_CDS: -5.73 Total: -113.25 kcal Atomic # 8 Polarization: -53.54 SS G_CDS: -0.15 Total: -53.70 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -79.39 4.12 -75.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603026708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.273 kcal (2) G-P(sol) polarization free energy of solvation -79.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds