Wall clock time and date at job start Tue Mar 31 2020 01:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21270 * 120.00334 * 2 1 4 4 N 1.34784 * 119.99511 * 180.02562 * 2 1 3 5 5 C 1.46924 * 120.63166 * 359.97438 * 4 2 1 6 6 C 1.53191 * 108.77570 * 126.41104 * 5 4 2 7 7 C 1.53049 * 109.31043 * 54.63617 * 6 5 4 8 8 C 1.53042 * 109.53639 * 298.63421 * 7 6 5 9 9 H 1.09002 * 109.52329 * 301.39652 * 8 7 6 10 10 C 1.50696 * 109.49395 * 181.31546 * 8 7 6 11 11 O 1.21294 * 120.00590 * 340.18216 * 10 8 7 12 12 N 1.34783 * 119.99947 * 160.18299 * 10 8 7 13 13 C 1.37100 * 120.00203 * 186.50033 * 12 10 8 14 14 H 1.07995 * 119.99792 * 325.58053 * 13 12 10 15 15 C 1.38946 * 119.99655 * 145.57502 * 13 12 10 16 16 N 1.31412 * 120.00436 * 337.98480 * 15 13 12 17 17 Si 1.86806 * 119.99714 * 157.98516 * 15 13 12 18 18 H 1.48495 * 109.46723 * 94.97978 * 17 15 13 19 19 H 1.48497 * 109.47388 * 214.98012 * 17 15 13 20 20 H 1.48497 * 109.46892 * 334.98309 * 17 15 13 21 21 C 1.46503 * 119.99437 * 6.50008 * 12 10 8 22 22 C 1.47198 * 109.47047 * 93.53046 * 21 12 10 23 23 N 4.66893 * 157.95326 * 0.46901 * 2 1 3 24 24 C 1.46921 * 120.62872 * 180.02562 * 4 2 1 25 25 H 1.08994 * 109.47201 * 239.99734 * 1 2 3 26 26 H 1.09005 * 109.46722 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47020 * 119.99669 * 1 2 3 28 28 H 1.09001 * 109.58780 * 246.20082 * 5 4 2 29 29 H 1.09003 * 109.58797 * 6.48772 * 5 4 2 30 30 H 1.09004 * 109.49726 * 174.58125 * 6 5 4 31 31 H 1.08999 * 109.50157 * 294.68704 * 6 5 4 32 32 H 1.08993 * 109.45916 * 178.61031 * 7 6 5 33 33 H 1.09001 * 109.45453 * 58.65205 * 7 6 5 34 34 H 0.97001 * 119.99928 * 179.97438 * 16 15 13 35 35 H 1.09006 * 109.47016 * 213.52303 * 21 12 10 36 36 H 1.08996 * 109.47591 * 333.52636 * 21 12 10 37 37 H 1.08993 * 109.58830 * 113.79786 * 24 4 2 38 38 H 1.09007 * 109.58674 * 353.37147 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 1.4602 -2.4477 -0.0005 6 6 1.9681 -3.2994 -1.1682 7 6 3.4896 -3.4344 -1.0718 8 6 4.1335 -2.0494 -1.1682 9 1 3.8499 -1.5807 -2.1106 10 6 5.6329 -2.1864 -1.1057 11 8 6.1314 -3.1918 -0.6453 12 7 6.4201 -1.1918 -1.5613 13 6 7.7780 -1.3683 -1.6285 14 1 8.2823 -1.9657 -0.8835 15 6 8.5052 -0.7786 -2.6552 16 7 7.9042 -0.4322 -3.7713 17 14 10.3374 -0.4781 -2.4488 18 1 11.0942 -1.6105 -3.0404 19 1 10.7131 0.7823 -3.1382 20 1 10.6611 -0.3675 -1.0038 21 6 5.8245 0.0780 -1.9847 22 6 5.8302 1.0231 -0.8562 23 7 5.8346 1.7525 0.0143 24 6 3.6500 -1.1836 0.0000 25 1 -0.3633 -0.5138 0.8899 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3633 -0.5138 -0.8900 28 1 1.6424 -2.9696 0.9389 29 1 0.3917 -2.2656 -0.1161 30 1 1.5116 -4.2882 -1.1228 31 1 1.7045 -2.8192 -2.1105 32 1 3.8509 -4.0605 -1.8875 33 1 3.7538 -3.8922 -0.1185 34 1 8.4118 -0.0202 -4.4878 35 1 6.4034 0.4937 -2.8096 36 1 4.7985 -0.0926 -2.3106 37 1 4.0104 -1.6026 0.9394 38 1 4.0267 -0.1675 -0.1177 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000059746581.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:04 Heat of formation + Delta-G solvation = -35.287381 kcal Electronic energy + Delta-G solvation = -22689.172769 eV Core-core repulsion = 19339.172430 eV Total energy + Delta-G solvation = -3350.000339 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.30877 -38.88604 -36.92289 -35.96094 -34.55630 -32.90247 -32.05796 -31.21845 -29.50394 -27.45730 -25.51125 -24.89119 -23.33362 -21.35221 -19.00981 -18.94392 -17.96171 -17.04606 -16.46776 -16.21132 -15.71028 -15.38435 -15.00360 -14.46164 -14.38401 -13.89501 -13.48986 -13.29592 -13.24081 -13.13662 -12.79517 -12.61186 -12.17255 -12.15445 -12.08083 -11.92215 -11.51657 -11.23047 -11.20223 -10.90598 -10.79836 -10.65814 -10.56756 -10.40524 -10.26002 -9.76596 -9.18787 -8.76154 -8.49125 -7.79774 -6.50926 -4.15038 2.67185 2.97624 3.11535 3.22457 3.27923 3.38354 3.58488 3.65416 4.09036 4.52004 4.59949 4.70271 4.86818 4.93298 5.00592 5.09727 5.12443 5.24021 5.30201 5.38690 5.41480 5.54033 5.65681 5.77150 5.80322 5.89081 5.95667 6.03727 6.15831 6.39496 6.49475 6.55320 6.74118 7.44677 7.46833 7.99547 8.22672 8.27133 8.35191 8.96319 9.15626 9.71516 10.53686 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.023322 B = 0.005859 C = 0.005049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.280105 B = 4777.875781 C = 5543.931075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.506 3.494 3 O -0.539 6.539 4 N -0.612 5.612 5 C 0.106 3.894 6 C -0.135 4.135 7 C -0.097 4.097 8 C -0.121 4.121 9 H 0.091 0.909 10 C 0.477 3.523 11 O -0.562 6.562 12 N -0.438 5.438 13 C -0.312 4.312 14 H 0.098 0.902 15 C 0.038 3.962 16 N -0.869 5.869 17 Si 0.919 3.081 18 H -0.275 1.275 19 H -0.280 1.280 20 H -0.268 1.268 21 C 0.179 3.821 22 C 0.205 3.795 23 N -0.451 5.451 24 C 0.116 3.884 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.273 0.727 35 H 0.155 0.845 36 H 0.096 0.904 37 H 0.070 0.930 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.888 -3.587 1.170 15.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.294 3.706 3 O -0.416 6.416 4 N -0.346 5.346 5 C -0.017 4.017 6 C -0.173 4.173 7 C -0.135 4.135 8 C -0.144 4.144 9 H 0.109 0.891 10 C 0.264 3.736 11 O -0.443 6.443 12 N -0.158 5.158 13 C -0.440 4.440 14 H 0.116 0.884 15 C -0.166 4.166 16 N -0.507 5.507 17 Si 0.745 3.255 18 H -0.201 1.201 19 H -0.205 1.205 20 H -0.192 1.192 21 C 0.051 3.949 22 C -0.114 4.114 23 N -0.131 5.131 24 C -0.007 4.007 25 H 0.104 0.896 26 H 0.108 0.892 27 H 0.106 0.894 28 H 0.088 0.912 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.172 0.828 36 H 0.114 0.886 37 H 0.088 0.912 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -14.233 -2.363 2.514 14.645 hybrid contribution 0.831 -0.096 -0.458 0.953 sum -13.402 -2.459 2.057 13.780 Atomic orbital electron populations 1.21927 0.92029 1.05223 1.03896 1.20839 0.90572 0.83183 0.75960 1.90771 1.70602 1.30886 1.49363 1.48187 1.06896 1.06048 1.73471 1.21803 0.96364 0.84180 0.99369 1.21963 0.96947 0.99953 0.98461 1.21291 0.92982 0.95443 1.03800 1.21720 0.94894 0.97898 0.99861 0.89083 1.20132 0.87180 0.83625 0.82655 1.90543 1.75627 1.30260 1.47855 1.43323 1.06815 1.08203 1.57461 1.19509 0.80408 1.33551 1.10499 0.88387 1.25343 1.00574 0.97292 0.93407 1.69747 1.37662 1.40013 1.03298 0.86023 0.82357 0.78094 0.79017 1.20101 1.20537 1.19247 1.19368 1.01064 0.82985 0.91455 1.30319 0.92088 0.94023 0.94940 1.81015 1.09804 1.11313 1.10941 1.21684 0.78934 1.02028 0.98014 0.89614 0.89172 0.89421 0.91210 0.89687 0.90441 0.91365 0.90926 0.90824 0.91682 0.82824 0.88589 0.91196 0.88465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.49 8.67 36.01 0.31 -1.18 16 2 C 0.51 7.21 7.81 -10.98 -0.09 7.13 16 3 O -0.54 -10.41 16.50 5.57 0.09 -10.32 16 4 N -0.61 -8.30 2.97 -172.74 -0.51 -8.81 16 5 C 0.11 1.00 6.34 -3.71 -0.02 0.98 16 6 C -0.14 -1.34 6.08 -26.61 -0.16 -1.50 16 7 C -0.10 -1.39 4.61 -26.68 -0.12 -1.51 16 8 C -0.12 -2.08 1.84 -91.63 -0.17 -2.25 16 9 H 0.09 1.49 6.55 -51.93 -0.34 1.15 16 10 C 0.48 10.73 6.79 -10.98 -0.07 10.65 16 11 O -0.56 -14.38 15.87 5.55 0.09 -14.30 16 12 N -0.44 -10.41 2.51 -117.93 -0.30 -10.70 16 13 C -0.31 -8.20 8.98 -14.93 -0.13 -8.33 16 14 H 0.10 2.72 7.66 -52.49 -0.40 2.31 16 15 C 0.04 0.95 5.01 -17.47 -0.09 0.86 16 16 N -0.87 -21.55 11.24 55.50 0.62 -20.93 16 17 Si 0.92 20.02 29.61 -169.99 -5.03 14.99 16 18 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 19 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 20 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 21 C 0.18 3.76 5.09 -6.83 -0.03 3.72 16 22 C 0.20 4.52 13.44 -20.77 -0.28 4.24 16 23 N -0.45 -10.56 18.54 42.14 0.78 -9.78 16 24 C 0.12 1.98 5.54 -3.69 -0.02 1.96 16 25 H 0.09 0.56 7.94 -51.93 -0.41 0.15 16 26 H 0.09 0.79 8.12 -51.93 -0.42 0.37 16 27 H 0.09 0.57 7.69 -51.93 -0.40 0.17 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 0.55 5.93 -51.93 -0.31 0.24 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.07 1.12 7.95 -51.93 -0.41 0.70 16 34 H 0.27 6.38 8.31 -40.82 -0.34 6.04 16 35 H 0.16 3.43 5.30 -51.93 -0.28 3.16 16 36 H 0.10 1.74 5.70 -51.93 -0.30 1.45 16 37 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.10 1.91 3.92 -51.93 -0.20 1.70 16 LS Contribution 314.53 15.07 4.74 4.74 Total: -1.00 -32.36 314.53 -5.12 -37.47 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -4.72 Total: 2.87 kcal Atomic # 6 Polarization: 15.65 SS G_CDS: -0.88 Total: 14.77 kcal Atomic # 7 Polarization: -50.82 SS G_CDS: 0.60 Total: -50.23 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: 0.18 Total: -24.62 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.03 Total: 14.99 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.36 -5.12 -37.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059746581.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.186 kcal (2) G-P(sol) polarization free energy of solvation -32.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds