Wall clock time and date at job start Tue Mar 31 2020 01:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21270 * 120.00334 * 2 1 4 4 N 1.34784 * 119.99511 * 180.02562 * 2 1 3 5 5 C 1.46924 * 120.63166 * 359.97438 * 4 2 1 6 6 C 1.53191 * 108.77570 * 126.41104 * 5 4 2 7 7 C 1.53049 * 109.31043 * 54.63617 * 6 5 4 8 8 C 1.53042 * 109.53639 * 298.63421 * 7 6 5 9 9 H 1.09002 * 109.52329 * 301.39652 * 8 7 6 10 10 C 1.50696 * 109.49395 * 181.31546 * 8 7 6 11 11 O 1.21294 * 120.00590 * 340.18216 * 10 8 7 12 12 N 1.34783 * 119.99947 * 160.18299 * 10 8 7 13 13 C 1.37100 * 120.00203 * 186.50033 * 12 10 8 14 14 H 1.07995 * 119.99792 * 325.58053 * 13 12 10 15 15 C 1.38946 * 119.99655 * 145.57502 * 13 12 10 16 16 N 1.31412 * 120.00436 * 337.98480 * 15 13 12 17 17 Si 1.86806 * 119.99714 * 157.98516 * 15 13 12 18 18 H 1.48495 * 109.46723 * 94.97978 * 17 15 13 19 19 H 1.48497 * 109.47388 * 214.98012 * 17 15 13 20 20 H 1.48497 * 109.46892 * 334.98309 * 17 15 13 21 21 C 1.46503 * 119.99437 * 6.50008 * 12 10 8 22 22 C 1.47198 * 109.47047 * 93.53046 * 21 12 10 23 23 N 4.66893 * 157.95326 * 0.46901 * 2 1 3 24 24 C 1.46921 * 120.62872 * 180.02562 * 4 2 1 25 25 H 1.08994 * 109.47201 * 239.99734 * 1 2 3 26 26 H 1.09005 * 109.46722 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47020 * 119.99669 * 1 2 3 28 28 H 1.09001 * 109.58780 * 246.20082 * 5 4 2 29 29 H 1.09003 * 109.58797 * 6.48772 * 5 4 2 30 30 H 1.09004 * 109.49726 * 174.58125 * 6 5 4 31 31 H 1.08999 * 109.50157 * 294.68704 * 6 5 4 32 32 H 1.08993 * 109.45916 * 178.61031 * 7 6 5 33 33 H 1.09001 * 109.45453 * 58.65205 * 7 6 5 34 34 H 0.97001 * 119.99928 * 179.97438 * 16 15 13 35 35 H 1.09006 * 109.47016 * 213.52303 * 21 12 10 36 36 H 1.08996 * 109.47591 * 333.52636 * 21 12 10 37 37 H 1.08993 * 109.58830 * 113.79786 * 24 4 2 38 38 H 1.09007 * 109.58674 * 353.37147 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 1.4602 -2.4477 -0.0005 6 6 1.9681 -3.2994 -1.1682 7 6 3.4896 -3.4344 -1.0718 8 6 4.1335 -2.0494 -1.1682 9 1 3.8499 -1.5807 -2.1106 10 6 5.6329 -2.1864 -1.1057 11 8 6.1314 -3.1918 -0.6453 12 7 6.4201 -1.1918 -1.5613 13 6 7.7780 -1.3683 -1.6285 14 1 8.2823 -1.9657 -0.8835 15 6 8.5052 -0.7786 -2.6552 16 7 7.9042 -0.4322 -3.7713 17 14 10.3374 -0.4781 -2.4488 18 1 11.0942 -1.6105 -3.0404 19 1 10.7131 0.7823 -3.1382 20 1 10.6611 -0.3675 -1.0038 21 6 5.8245 0.0780 -1.9847 22 6 5.8302 1.0231 -0.8562 23 7 5.8346 1.7525 0.0143 24 6 3.6500 -1.1836 0.0000 25 1 -0.3633 -0.5138 0.8899 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3633 -0.5138 -0.8900 28 1 1.6424 -2.9696 0.9389 29 1 0.3917 -2.2656 -0.1161 30 1 1.5116 -4.2882 -1.1228 31 1 1.7045 -2.8192 -2.1105 32 1 3.8509 -4.0605 -1.8875 33 1 3.7538 -3.8922 -0.1185 34 1 8.4118 -0.0202 -4.4878 35 1 6.4034 0.4937 -2.8096 36 1 4.7985 -0.0926 -2.3106 37 1 4.0104 -1.6026 0.9394 38 1 4.0267 -0.1675 -0.1177 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000059746581.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:04 Heat of formation + Delta-G solvation = -56.966824 kcal Electronic energy + Delta-G solvation = -22690.112860 eV Core-core repulsion = 19339.172430 eV Total energy + Delta-G solvation = -3350.940430 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.60631 -40.41361 -38.22291 -37.74369 -36.42517 -34.24627 -33.70977 -32.41131 -30.40343 -29.26453 -27.13516 -26.09526 -24.65435 -22.53321 -20.61277 -20.08301 -19.77525 -18.29226 -18.03628 -17.82818 -17.04715 -16.76634 -16.46202 -16.01918 -15.72879 -15.25663 -15.02181 -14.74797 -14.69220 -14.19420 -14.14893 -13.90475 -13.77198 -13.51428 -13.33215 -13.12800 -13.01866 -12.96702 -12.63059 -12.48792 -12.32069 -12.16907 -11.89164 -11.81836 -11.55013 -11.08088 -10.91526 -10.45315 -9.76618 -9.66498 -8.43667 -6.15032 1.33958 1.42343 1.48925 1.57005 1.63572 1.76938 1.82061 2.05269 2.30237 2.81712 2.98908 3.34118 3.60542 3.73664 3.82944 3.94280 4.06096 4.14134 4.18333 4.37158 4.48842 4.54626 4.65067 4.69632 4.73859 4.80603 4.94434 4.96231 5.06696 5.17714 5.24074 5.43996 5.46370 5.47760 6.08436 6.35072 6.45973 6.54573 7.05802 7.17814 7.25329 7.84849 8.60469 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.023322 B = 0.005859 C = 0.005049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.280105 B = 4777.875781 C = 5543.931075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.496 3.504 3 O -0.601 6.601 4 N -0.609 5.609 5 C 0.100 3.900 6 C -0.124 4.124 7 C -0.096 4.096 8 C -0.108 4.108 9 H 0.102 0.898 10 C 0.467 3.533 11 O -0.601 6.601 12 N -0.450 5.450 13 C -0.348 4.348 14 H 0.070 0.930 15 C 0.014 3.986 16 N -0.877 5.877 17 Si 0.971 3.029 18 H -0.269 1.269 19 H -0.266 1.266 20 H -0.279 1.279 21 C 0.188 3.812 22 C 0.217 3.783 23 N -0.476 5.476 24 C 0.122 3.878 25 H 0.115 0.885 26 H 0.087 0.913 27 H 0.120 0.880 28 H 0.077 0.923 29 H 0.131 0.869 30 H 0.111 0.889 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.281 0.719 35 H 0.148 0.852 36 H 0.126 0.874 37 H 0.054 0.946 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.570 -4.170 0.386 18.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.288 3.712 3 O -0.483 6.483 4 N -0.342 5.342 5 C -0.021 4.021 6 C -0.162 4.162 7 C -0.134 4.134 8 C -0.130 4.130 9 H 0.120 0.880 10 C 0.257 3.743 11 O -0.485 6.485 12 N -0.170 5.170 13 C -0.475 4.475 14 H 0.088 0.912 15 C -0.190 4.190 16 N -0.515 5.515 17 Si 0.795 3.205 18 H -0.195 1.195 19 H -0.191 1.191 20 H -0.204 1.204 21 C 0.061 3.939 22 C -0.101 4.101 23 N -0.156 5.156 24 C -0.003 4.003 25 H 0.134 0.866 26 H 0.105 0.895 27 H 0.138 0.862 28 H 0.096 0.904 29 H 0.148 0.852 30 H 0.129 0.871 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.164 0.836 36 H 0.143 0.857 37 H 0.072 0.928 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.959 -2.967 1.711 17.301 hybrid contribution 1.675 0.033 -0.202 1.687 sum -15.284 -2.934 1.509 15.636 Atomic orbital electron populations 1.21964 0.86983 1.06154 1.06769 1.21964 0.92847 0.82141 0.74278 1.90748 1.72231 1.33102 1.52179 1.48313 1.05183 1.07877 1.72804 1.22192 0.98285 0.82024 0.99615 1.21949 0.93003 1.02111 0.99155 1.21325 0.96452 0.92971 1.02688 1.21653 0.90790 1.00189 1.00397 0.87973 1.21079 0.89514 0.82673 0.81042 1.90501 1.77015 1.31726 1.49248 1.43483 1.06456 1.09328 1.57707 1.19383 0.82020 1.35159 1.10933 0.91228 1.25908 1.03726 0.96469 0.92900 1.69762 1.38909 1.39417 1.03365 0.85253 0.78372 0.78556 0.78303 1.19452 1.19077 1.20390 1.19418 1.02308 0.81662 0.90465 1.30497 0.91257 0.93609 0.94733 1.81002 1.10781 1.12197 1.11577 1.21312 0.81940 1.00024 0.96999 0.86648 0.89455 0.86169 0.90434 0.85158 0.87116 0.90388 0.91918 0.92193 0.90869 0.83566 0.85668 0.92798 0.91179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 8.67 71.24 0.62 -1.46 16 2 C 0.50 13.13 7.81 87.66 0.68 13.81 16 3 O -0.60 -23.23 16.50 -3.00 -0.05 -23.28 16 4 N -0.61 -15.19 2.97 -818.82 -2.43 -17.63 16 5 C 0.10 1.45 6.34 86.36 0.55 2.00 16 6 C -0.12 -1.97 6.08 30.67 0.19 -1.78 16 7 C -0.10 -2.63 4.61 30.62 0.14 -2.49 16 8 C -0.11 -3.69 1.84 -11.45 -0.02 -3.71 16 9 H 0.10 3.23 6.55 -2.39 -0.02 3.22 16 10 C 0.47 21.72 6.79 87.65 0.60 22.32 16 11 O -0.60 -32.18 15.87 -3.07 -0.05 -32.23 16 12 N -0.45 -22.04 2.51 -645.41 -1.62 -23.66 16 13 C -0.35 -18.90 8.98 84.04 0.75 -18.14 16 14 H 0.07 4.10 7.66 -2.91 -0.02 4.07 16 15 C 0.01 0.69 5.01 84.93 0.43 1.12 16 16 N -0.88 -43.32 11.24 21.66 0.24 -43.08 16 17 Si 0.97 41.28 29.61 68.60 2.03 43.31 16 18 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 19 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 20 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 21 C 0.19 8.04 5.09 84.57 0.43 8.47 16 22 C 0.22 9.82 13.44 89.44 1.20 11.02 16 23 N -0.48 -22.84 18.54 20.00 0.37 -22.47 16 24 C 0.12 4.16 5.54 86.38 0.48 4.64 16 25 H 0.12 0.87 7.94 -2.39 -0.02 0.85 16 26 H 0.09 1.25 8.12 -2.38 -0.02 1.23 16 27 H 0.12 0.83 7.69 -2.39 -0.02 0.82 16 28 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.13 0.81 5.93 -2.39 -0.01 0.79 16 30 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 31 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.06 1.80 7.95 -2.39 -0.02 1.78 16 34 H 0.28 12.89 8.31 -92.71 -0.77 12.12 16 35 H 0.15 6.58 5.30 -2.38 -0.01 6.57 16 36 H 0.13 4.52 5.70 -2.39 -0.01 4.51 16 37 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.07 2.81 3.92 -2.38 -0.01 2.80 16 Total: -1.00 -75.04 314.53 5.63 -69.41 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: 1.09 Total: 13.83 kcal Atomic # 6 Polarization: 29.74 SS G_CDS: 6.04 Total: 35.79 kcal Atomic # 7 Polarization: -103.40 SS G_CDS: -3.44 Total: -106.84 kcal Atomic # 8 Polarization: -55.40 SS G_CDS: -0.10 Total: -55.50 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.31 kcal Total: -75.04 5.63 -69.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059746581.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.442 kcal (2) G-P(sol) polarization free energy of solvation -75.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds