Wall clock time and date at job start Tue Mar 31 2020 01:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21278 * 120.00416 * 2 1 4 4 N 1.34774 * 119.99780 * 179.97438 * 2 1 3 5 5 C 1.46968 * 120.65286 * 359.81988 * 4 2 1 6 6 C 1.53194 * 108.88837 * 233.52976 * 5 4 2 7 7 C 1.53042 * 109.31394 * 305.44752 * 6 5 4 8 8 C 1.53037 * 109.53743 * 61.36288 * 7 6 5 9 9 H 1.09004 * 109.50099 * 58.58823 * 8 7 6 10 10 C 1.50699 * 109.49713 * 178.68123 * 8 7 6 11 11 O 1.21299 * 119.99602 * 6.88483 * 10 8 7 12 12 N 1.34779 * 120.00513 * 186.88179 * 10 8 7 13 13 C 1.37100 * 119.99429 * 3.70161 * 12 10 8 14 14 H 1.07998 * 120.00333 * 14.25428 * 13 12 10 15 15 C 1.38952 * 119.99782 * 194.25527 * 13 12 10 16 16 N 1.31416 * 119.99605 * 11.54798 * 15 13 12 17 17 Si 1.86797 * 120.00092 * 191.54937 * 15 13 12 18 18 H 1.48499 * 109.47190 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47028 * 119.99886 * 17 15 13 20 20 H 1.48496 * 109.47007 * 240.00008 * 17 15 13 21 21 C 1.46500 * 120.00272 * 183.69608 * 12 10 8 22 22 C 1.47201 * 109.46928 * 83.74563 * 21 12 10 23 23 N 7.20834 * 166.67705 * 234.50305 * 2 1 3 24 24 C 1.46923 * 120.62977 * 180.02562 * 4 2 1 25 25 H 1.08997 * 109.47481 * 270.00578 * 1 2 3 26 26 H 1.09005 * 109.46718 * 29.99884 * 1 2 3 27 27 H 1.09003 * 109.47401 * 149.99801 * 1 2 3 28 28 H 1.09005 * 109.46476 * 113.75140 * 5 4 2 29 29 H 1.08993 * 109.70901 * 353.46570 * 5 4 2 30 30 H 1.08995 * 109.49641 * 185.48886 * 6 5 4 31 31 H 1.09006 * 109.49592 * 65.39823 * 6 5 4 32 32 H 1.08997 * 109.45909 * 301.34280 * 7 6 5 33 33 H 1.09002 * 109.44194 * 181.37622 * 7 6 5 34 34 H 0.97005 * 119.99710 * 179.97438 * 16 15 13 35 35 H 1.08994 * 109.46983 * 203.74441 * 21 12 10 36 36 H 1.09001 * 109.47036 * 323.74502 * 21 12 10 37 37 H 1.08998 * 109.59049 * 6.60547 * 24 4 2 38 38 H 1.09000 * 109.58806 * 246.31829 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.4605 -2.4482 0.0051 6 6 1.9716 -3.3004 1.1710 7 6 3.4928 -3.4350 1.0710 8 6 4.1364 -2.0498 1.1666 9 1 3.8545 -1.5819 2.1098 10 6 5.6358 -2.1863 1.1005 11 8 6.1366 -3.2652 0.8632 12 7 6.4202 -1.1095 1.3049 13 6 5.8579 0.0929 1.6477 14 1 4.8304 0.1341 1.9777 15 6 6.6101 1.2587 1.5707 16 7 7.7743 1.2504 0.9611 17 14 5.9664 2.8377 2.3335 18 1 4.6419 2.5832 2.9548 19 1 6.9180 3.3099 3.3711 20 1 5.8274 3.8754 1.2803 21 6 7.8736 -1.2241 1.1610 22 6 8.2392 -1.0779 -0.2574 23 7 8.5213 -0.9645 -1.3524 24 6 3.6500 -1.1834 0.0011 25 1 -0.3634 0.0001 1.0276 26 1 -0.3633 0.8901 -0.5138 27 1 -0.3634 -0.8900 -0.5139 28 1 1.6407 -2.9696 -0.9351 29 1 0.3921 -2.2687 0.1244 30 1 1.5151 -4.2892 1.1264 31 1 1.7100 -2.8208 2.1143 32 1 3.7549 -3.8921 0.1168 33 1 3.8560 -4.0613 1.8858 34 1 8.2992 2.0643 0.9070 35 1 8.3592 -0.4415 1.7439 36 1 8.1986 -2.2001 1.5213 37 1 4.0266 -0.1674 0.1191 38 1 4.0112 -1.6001 -0.9391 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000059746582.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:07 Heat of formation + Delta-G solvation = -32.523204 kcal Electronic energy + Delta-G solvation = -22807.259436 eV Core-core repulsion = 19457.378960 eV Total energy + Delta-G solvation = -3349.880476 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.12132 -38.83385 -36.84235 -35.55243 -34.46720 -32.74623 -31.74701 -31.23595 -29.46162 -27.51687 -25.10686 -24.74629 -23.20794 -21.15915 -19.23901 -18.72873 -17.79123 -16.87418 -16.38485 -16.15460 -15.63635 -15.19833 -14.53787 -14.43535 -14.26919 -13.82602 -13.40813 -13.16708 -13.09616 -12.82604 -12.59473 -12.48229 -12.16914 -11.95230 -11.80163 -11.46754 -11.28378 -11.18622 -11.06940 -10.84964 -10.69514 -10.44462 -10.37352 -10.23302 -10.12146 -9.56847 -9.34065 -8.70351 -8.35584 -8.12265 -6.50067 -4.10635 2.84952 3.07595 3.18192 3.24267 3.27813 3.61553 3.79961 4.11105 4.20740 4.66091 4.73533 4.88055 4.95138 5.03424 5.12830 5.23950 5.35957 5.42292 5.49262 5.57704 5.62832 5.74846 5.83296 5.95944 6.01293 6.14669 6.22427 6.35844 6.48730 6.64975 6.68841 6.77331 6.88438 7.29027 7.46685 7.65827 8.18142 8.42387 8.89405 8.91311 9.22781 9.62211 10.49512 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.014617 B = 0.007973 C = 0.005921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.112178 B = 3510.896563 C = 4728.121316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.506 3.494 3 O -0.538 6.538 4 N -0.611 5.611 5 C 0.103 3.897 6 C -0.134 4.134 7 C -0.099 4.099 8 C -0.098 4.098 9 H 0.090 0.910 10 C 0.467 3.533 11 O -0.596 6.596 12 N -0.438 5.438 13 C -0.332 4.332 14 H 0.108 0.892 15 C 0.039 3.961 16 N -0.876 5.876 17 Si 0.929 3.071 18 H -0.266 1.266 19 H -0.280 1.280 20 H -0.280 1.280 21 C 0.221 3.779 22 C 0.259 3.741 23 N -0.490 5.490 24 C 0.118 3.882 25 H 0.091 0.909 26 H 0.089 0.911 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.274 0.726 35 H 0.147 0.853 36 H 0.082 0.918 37 H 0.120 0.880 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.101 -5.194 3.511 14.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.294 3.706 3 O -0.414 6.414 4 N -0.345 5.345 5 C -0.020 4.020 6 C -0.172 4.172 7 C -0.137 4.137 8 C -0.120 4.120 9 H 0.108 0.892 10 C 0.255 3.745 11 O -0.482 6.482 12 N -0.157 5.157 13 C -0.459 4.459 14 H 0.126 0.874 15 C -0.165 4.165 16 N -0.515 5.515 17 Si 0.755 3.245 18 H -0.190 1.190 19 H -0.205 1.205 20 H -0.206 1.206 21 C 0.094 3.906 22 C -0.059 4.059 23 N -0.170 5.170 24 C -0.004 4.004 25 H 0.109 0.891 26 H 0.108 0.892 27 H 0.098 0.902 28 H 0.085 0.915 29 H 0.103 0.897 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.164 0.836 36 H 0.100 0.900 37 H 0.138 0.862 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.952 -4.815 1.741 13.002 hybrid contribution -0.407 0.904 0.720 1.226 sum -12.359 -3.911 2.461 13.194 Atomic orbital electron populations 1.21956 0.92459 1.04431 1.04476 1.20750 0.90351 0.83339 0.76147 1.90769 1.70478 1.30872 1.49327 1.48225 1.07375 1.05675 1.73248 1.21822 0.96472 0.84529 0.99176 1.21950 0.97066 0.99712 0.98503 1.21324 0.92960 0.96098 1.03320 1.21306 0.93479 0.96746 1.00467 0.89168 1.20015 0.88332 0.84473 0.81686 1.90562 1.75625 1.27373 1.54597 1.43691 1.03818 1.09221 1.58980 1.19809 0.99355 0.82917 1.43800 0.87440 1.25249 0.95816 0.99633 0.95788 1.69861 1.12813 1.29451 1.39398 0.85796 0.78930 0.80983 0.78752 1.19041 1.20529 1.20568 1.18912 0.83435 1.02960 0.85277 1.29427 0.92047 0.89267 0.95139 1.80887 1.09745 1.13106 1.13256 1.21629 0.77779 1.03993 0.96983 0.89082 0.89232 0.90171 0.91462 0.89725 0.90754 0.91524 0.91323 0.91237 0.91469 0.83637 0.90001 0.86196 0.92068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.72 9.46 36.01 0.34 -1.38 16 2 C 0.51 7.96 7.81 -10.99 -0.09 7.88 16 3 O -0.54 -11.27 16.51 5.56 0.09 -11.18 16 4 N -0.61 -9.20 2.98 -172.76 -0.51 -9.72 16 5 C 0.10 1.10 6.21 -3.69 -0.02 1.08 16 6 C -0.13 -1.46 6.08 -26.61 -0.16 -1.62 16 7 C -0.10 -1.48 4.47 -26.69 -0.12 -1.60 16 8 C -0.10 -1.78 1.84 -91.67 -0.17 -1.95 16 9 H 0.09 1.64 7.20 -51.93 -0.37 1.26 16 10 C 0.47 10.30 6.88 -10.99 -0.08 10.23 16 11 O -0.60 -14.32 15.66 5.54 0.09 -14.24 16 12 N -0.44 -10.12 2.61 -117.93 -0.31 -10.42 16 13 C -0.33 -7.80 7.78 -14.93 -0.12 -7.92 16 14 H 0.11 2.48 5.68 -52.49 -0.30 2.18 16 15 C 0.04 0.94 5.16 -17.46 -0.09 0.85 16 16 N -0.88 -21.72 8.93 55.50 0.50 -21.22 16 17 Si 0.93 19.75 29.57 -169.99 -5.03 14.72 16 18 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 19 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 20 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 21 C 0.22 4.93 5.09 -6.83 -0.03 4.89 16 22 C 0.26 6.37 14.03 -20.75 -0.29 6.08 16 23 N -0.49 -12.75 18.54 42.17 0.78 -11.97 16 24 C 0.12 2.22 5.39 -3.73 -0.02 2.20 16 25 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.08 0.58 6.20 -51.93 -0.32 0.26 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.08 0.64 5.54 -51.93 -0.29 0.36 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 1.10 8.06 -51.93 -0.42 0.68 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.27 6.60 8.31 -40.82 -0.34 6.27 16 35 H 0.15 3.25 5.80 -51.93 -0.30 2.95 16 36 H 0.08 1.68 7.57 -51.93 -0.39 1.28 16 37 H 0.12 2.68 4.98 -51.93 -0.26 2.42 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 LS Contribution 312.64 15.07 4.71 4.71 Total: -1.00 -31.17 312.64 -5.27 -36.44 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -4.75 Total: 4.13 kcal Atomic # 6 Polarization: 19.58 SS G_CDS: -0.85 Total: 18.74 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: 0.45 Total: -53.32 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: 0.18 Total: -25.42 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.03 Total: 14.72 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.17 -5.27 -36.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059746582.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.919 kcal (2) G-P(sol) polarization free energy of solvation -31.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds