Wall clock time and date at job start Tue Mar 31 2020 01:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46758 * 124.35240 * 2 1 4 4 C 1.54482 * 105.47700 * 162.95703 * 3 2 1 5 5 H 1.08999 * 110.96925 * 143.56870 * 4 3 2 6 6 C 1.50697 * 110.97212 * 267.29811 * 4 3 2 7 7 O 1.21286 * 119.99799 * 2.40481 * 6 4 3 8 8 N 1.34767 * 120.00115 * 182.40187 * 6 4 3 9 9 C 1.46499 * 120.00264 * 3.50789 * 8 6 4 10 10 C 1.50702 * 109.47601 * 84.48315 * 9 8 6 11 11 H 1.08004 * 119.99509 * 359.97438 * 10 9 8 12 12 C 1.37868 * 120.00297 * 180.02562 * 10 9 8 13 13 N 1.31522 * 120.00353 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 120.00146 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46675 * 59.99843 * 14 12 10 16 16 H 1.48502 * 109.47119 * 299.99940 * 14 12 10 17 17 H 1.48497 * 109.47281 * 180.02562 * 14 12 10 18 18 C 1.46503 * 120.00294 * 183.50347 * 8 6 4 19 19 C 1.52995 * 109.47089 * 274.85960 * 18 8 6 20 20 C 1.47207 * 109.47215 * 184.80274 * 19 18 8 21 21 N 8.56192 * 121.98793 * 73.03609 * 2 1 3 22 22 C 1.54633 * 101.79470 * 25.43724 * 4 3 2 23 23 C 1.34422 * 124.34545 * 179.97438 * 2 1 3 24 24 O 1.21283 * 124.94499 * 0.46541 * 23 2 1 25 25 H 1.09006 * 109.47047 * 90.00021 * 1 2 3 26 26 H 1.09002 * 109.47705 * 209.99999 * 1 2 3 27 27 H 1.09007 * 109.47325 * 330.00691 * 1 2 3 28 28 H 1.08997 * 110.24660 * 43.95818 * 3 2 1 29 29 H 1.08998 * 110.32073 * 281.99578 * 3 2 1 30 30 H 1.09004 * 109.47033 * 324.48423 * 9 8 6 31 31 H 1.08996 * 109.47694 * 204.48654 * 9 8 6 32 32 H 0.97002 * 119.99487 * 0.02562 * 13 12 10 33 33 H 1.08998 * 109.46566 * 34.86016 * 18 8 6 34 34 H 1.08999 * 109.47470 * 154.85793 * 18 8 6 35 35 H 1.08995 * 109.47904 * 304.80597 * 19 18 8 36 36 H 1.09000 * 109.46957 * 64.81092 * 19 18 8 37 37 H 1.08992 * 110.49056 * 93.86251 * 22 4 3 38 38 H 1.09001 * 110.48294 * 216.50907 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2116 0.0000 4 6 3.7009 0.7487 0.4364 5 1 4.4754 1.3013 -0.0954 6 6 3.8744 0.8819 1.9274 7 8 2.9511 1.2668 2.6133 8 7 5.0553 0.5733 2.4986 9 6 6.1933 0.1823 1.6629 10 6 6.9047 1.4171 1.1729 11 1 6.5448 2.3955 1.4554 12 6 8.0142 1.2980 0.3632 13 7 8.4522 0.1067 0.0188 14 14 8.8956 2.8288 -0.2447 15 1 9.3824 3.6141 0.9179 16 1 7.9561 3.6567 -1.0429 17 1 10.0484 2.4324 -1.0926 18 6 5.2013 0.6290 3.9552 19 6 5.5401 2.0593 4.3795 20 6 5.7999 2.0929 5.8281 21 7 6.0005 2.1188 6.9459 22 6 3.6908 -0.7379 0.0109 23 6 2.2233 -1.1099 0.0005 24 8 1.7945 -2.2443 -0.0071 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8901 0.5137 28 1 1.8982 1.9384 0.7098 29 1 2.3313 1.6440 -0.9998 30 1 5.8362 -0.3940 0.8094 31 1 6.8826 -0.4257 2.2489 32 1 7.9943 -0.6882 0.3342 33 1 4.2674 0.3219 4.4259 34 1 6.0024 -0.0416 4.2661 35 1 6.4270 2.3970 3.8435 36 1 4.7021 2.7158 4.1455 37 1 4.1208 -0.8530 -0.9840 38 1 4.2337 -1.3455 0.7349 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067230916.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:40 Heat of formation + Delta-G solvation = -45.214215 kcal Electronic energy + Delta-G solvation = -22252.620609 eV Core-core repulsion = 18902.189810 eV Total energy + Delta-G solvation = -3350.430799 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.72993 -38.99054 -36.75873 -36.03942 -35.43850 -33.31277 -32.78915 -30.94055 -27.56051 -26.95098 -26.80768 -24.51163 -23.26883 -21.93041 -19.52698 -18.77802 -17.78107 -17.26844 -16.67693 -16.40921 -15.82108 -15.58085 -15.03211 -14.65955 -14.45556 -13.92100 -13.57803 -13.45664 -13.40783 -13.30799 -12.92400 -12.51325 -12.33855 -12.29410 -12.17395 -11.97228 -11.84695 -11.78804 -11.39545 -11.26958 -11.03813 -10.87410 -10.55979 -10.27275 -9.65755 -9.45416 -9.35224 -8.66070 -8.62700 -8.01572 -6.65227 -4.44313 2.71725 2.80498 2.96597 3.05160 3.14384 3.27434 3.30073 3.45166 3.48545 4.28918 4.32397 4.47421 4.59470 4.85499 5.06475 5.07921 5.22852 5.30688 5.32384 5.37192 5.60574 5.64997 5.68017 5.69798 5.74676 5.92549 5.99686 6.11027 6.15771 6.33128 6.56836 6.66182 7.09843 7.18302 7.66623 7.71746 7.84038 8.17078 8.29007 8.49178 8.61087 9.27421 10.70761 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.011731 B = 0.006940 C = 0.004968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.322641 B = 4033.730475 C = 5634.293305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.618 5.618 3 C 0.117 3.883 4 C -0.119 4.119 5 H 0.140 0.860 6 C 0.530 3.470 7 O -0.561 6.561 8 N -0.589 5.589 9 C 0.219 3.781 10 C -0.623 4.623 11 H 0.059 0.941 12 C 0.028 3.972 13 N -0.899 5.899 14 Si 1.064 2.936 15 H -0.286 1.286 16 H -0.285 1.285 17 H -0.282 1.282 18 C 0.132 3.868 19 C -0.047 4.047 20 C 0.221 3.779 21 N -0.454 5.454 22 C -0.140 4.140 23 C 0.517 3.483 24 O -0.540 6.540 25 H 0.053 0.947 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.094 0.906 29 H 0.077 0.923 30 H 0.037 0.963 31 H 0.030 0.970 32 H 0.270 0.730 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.124 0.876 36 H 0.109 0.891 37 H 0.116 0.884 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.969 3.100 -2.072 9.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.353 5.353 3 C -0.006 4.006 4 C -0.141 4.141 5 H 0.158 0.842 6 C 0.317 3.683 7 O -0.441 6.441 8 N -0.319 5.319 9 C 0.099 3.901 10 C -0.662 4.662 11 H 0.077 0.923 12 C -0.178 4.178 13 N -0.534 5.534 14 Si 0.892 3.108 15 H -0.213 1.213 16 H -0.212 1.212 17 H -0.207 1.207 18 C 0.007 3.993 19 C -0.088 4.088 20 C -0.096 4.096 21 N -0.132 5.132 22 C -0.180 4.180 23 C 0.305 3.695 24 O -0.418 6.418 25 H 0.072 0.928 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.112 0.888 29 H 0.096 0.904 30 H 0.055 0.945 31 H 0.048 0.952 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.142 0.858 36 H 0.127 0.873 37 H 0.134 0.866 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.159 3.240 -0.968 8.832 hybrid contribution -1.120 -0.346 0.460 1.259 sum -9.278 2.894 -0.508 9.733 Atomic orbital electron populations 1.21481 0.78327 1.03069 1.01365 1.48091 1.06411 1.07515 1.73240 1.22057 0.89139 0.87571 1.01862 1.22281 0.99046 0.97810 0.94942 0.84238 1.20067 0.81971 0.76701 0.89517 1.90626 1.41092 1.47909 1.64454 1.47972 1.12019 1.65912 1.05970 1.19760 0.83244 0.96949 0.90191 1.22273 1.15585 0.92943 1.35368 0.92264 1.25764 0.95143 1.02755 0.94156 1.70846 1.41249 0.98194 1.43091 0.83576 0.76520 0.74053 0.76642 1.21283 1.21179 1.20682 1.21115 1.02313 0.94271 0.81642 1.19823 1.05875 1.01083 0.82027 1.29242 0.92427 0.92855 0.95122 1.81164 1.10053 1.08936 1.13022 1.22375 0.94343 0.95774 1.05539 1.21002 0.89439 0.84270 0.74753 1.90687 1.78831 1.21204 1.51086 0.92849 0.91032 0.91015 0.88812 0.90442 0.94534 0.95234 0.91948 0.90401 0.89937 0.85785 0.87280 0.86623 0.87471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.12 10.96 59.84 0.66 1.77 16 2 N -0.62 -8.63 3.33 -180.24 -0.60 -9.23 16 3 C 0.12 1.47 6.66 -3.12 -0.02 1.45 16 4 C -0.12 -1.74 2.58 -90.14 -0.23 -1.98 16 5 H 0.14 2.07 7.39 -51.93 -0.38 1.69 16 6 C 0.53 8.90 6.86 -10.99 -0.08 8.83 16 7 O -0.56 -10.30 15.25 5.55 0.08 -10.22 16 8 N -0.59 -9.94 2.48 -175.06 -0.43 -10.37 16 9 C 0.22 4.19 4.05 -5.19 -0.02 4.17 16 10 C -0.62 -13.48 8.69 -34.44 -0.30 -13.78 16 11 H 0.06 1.28 7.78 -52.48 -0.41 0.87 16 12 C 0.03 0.66 5.46 -17.82 -0.10 0.57 16 13 N -0.90 -22.84 13.65 55.43 0.76 -22.09 16 14 Si 1.06 21.31 29.90 -169.99 -5.08 16.23 16 15 H -0.29 -5.58 7.11 56.52 0.40 -5.18 16 16 H -0.29 -5.43 7.11 56.52 0.40 -5.03 16 17 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 18 C 0.13 1.97 5.33 -4.04 -0.02 1.95 16 19 C -0.05 -0.65 5.99 -29.52 -0.18 -0.82 16 20 C 0.22 3.29 15.43 -20.76 -0.32 2.97 16 21 N -0.45 -7.73 18.54 42.15 0.78 -6.95 16 22 C -0.14 -2.08 5.22 -26.69 -0.14 -2.22 16 23 C 0.52 8.50 8.02 -10.81 -0.09 8.42 16 24 O -0.54 -10.64 17.60 5.56 0.10 -10.55 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.87 7.93 -51.93 -0.41 0.45 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.09 1.21 7.05 -51.93 -0.37 0.84 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.04 0.70 4.84 -51.93 -0.25 0.45 16 31 H 0.03 0.60 7.66 -51.93 -0.40 0.21 16 32 H 0.27 6.72 7.22 -40.82 -0.29 6.43 16 33 H 0.08 1.16 7.63 -51.93 -0.40 0.76 16 34 H 0.08 1.17 7.79 -51.93 -0.40 0.77 16 35 H 0.12 1.79 8.04 -51.93 -0.42 1.37 16 36 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16 37 H 0.12 1.54 8.14 -51.93 -0.42 1.12 16 38 H 0.11 1.69 6.66 -51.93 -0.35 1.34 16 LS Contribution 328.03 15.07 4.94 4.94 Total: -1.00 -29.25 328.03 -5.28 -34.53 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -4.99 Total: 2.36 kcal Atomic # 6 Polarization: 12.17 SS G_CDS: -0.84 Total: 11.33 kcal Atomic # 7 Polarization: -49.14 SS G_CDS: 0.50 Total: -48.63 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: 0.18 Total: -20.76 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.08 Total: 16.23 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.25 -5.28 -34.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067230916.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.686 kcal (2) G-P(sol) polarization free energy of solvation -29.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds