Wall clock time and date at job start Tue Mar 31 2020 01:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46758 * 124.35240 * 2 1 4 4 C 1.54482 * 105.47700 * 162.95703 * 3 2 1 5 5 H 1.08999 * 110.96925 * 143.56870 * 4 3 2 6 6 C 1.50697 * 110.97212 * 267.29811 * 4 3 2 7 7 O 1.21286 * 119.99799 * 2.40481 * 6 4 3 8 8 N 1.34767 * 120.00115 * 182.40187 * 6 4 3 9 9 C 1.46499 * 120.00264 * 3.50789 * 8 6 4 10 10 C 1.50702 * 109.47601 * 84.48315 * 9 8 6 11 11 H 1.08004 * 119.99509 * 359.97438 * 10 9 8 12 12 C 1.37868 * 120.00297 * 180.02562 * 10 9 8 13 13 N 1.31522 * 120.00353 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 120.00146 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46675 * 59.99843 * 14 12 10 16 16 H 1.48502 * 109.47119 * 299.99940 * 14 12 10 17 17 H 1.48497 * 109.47281 * 180.02562 * 14 12 10 18 18 C 1.46503 * 120.00294 * 183.50347 * 8 6 4 19 19 C 1.52995 * 109.47089 * 274.85960 * 18 8 6 20 20 C 1.47207 * 109.47215 * 184.80274 * 19 18 8 21 21 N 8.56192 * 121.98793 * 73.03609 * 2 1 3 22 22 C 1.54633 * 101.79470 * 25.43724 * 4 3 2 23 23 C 1.34422 * 124.34545 * 179.97438 * 2 1 3 24 24 O 1.21283 * 124.94499 * 0.46541 * 23 2 1 25 25 H 1.09006 * 109.47047 * 90.00021 * 1 2 3 26 26 H 1.09002 * 109.47705 * 209.99999 * 1 2 3 27 27 H 1.09007 * 109.47325 * 330.00691 * 1 2 3 28 28 H 1.08997 * 110.24660 * 43.95818 * 3 2 1 29 29 H 1.08998 * 110.32073 * 281.99578 * 3 2 1 30 30 H 1.09004 * 109.47033 * 324.48423 * 9 8 6 31 31 H 1.08996 * 109.47694 * 204.48654 * 9 8 6 32 32 H 0.97002 * 119.99487 * 0.02562 * 13 12 10 33 33 H 1.08998 * 109.46566 * 34.86016 * 18 8 6 34 34 H 1.08999 * 109.47470 * 154.85793 * 18 8 6 35 35 H 1.08995 * 109.47904 * 304.80597 * 19 18 8 36 36 H 1.09000 * 109.46957 * 64.81092 * 19 18 8 37 37 H 1.08992 * 110.49056 * 93.86251 * 22 4 3 38 38 H 1.09001 * 110.48294 * 216.50907 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2116 0.0000 4 6 3.7009 0.7487 0.4364 5 1 4.4754 1.3013 -0.0954 6 6 3.8744 0.8819 1.9274 7 8 2.9511 1.2668 2.6133 8 7 5.0553 0.5733 2.4986 9 6 6.1933 0.1823 1.6629 10 6 6.9047 1.4171 1.1729 11 1 6.5448 2.3955 1.4554 12 6 8.0142 1.2980 0.3632 13 7 8.4522 0.1067 0.0188 14 14 8.8956 2.8288 -0.2447 15 1 9.3824 3.6141 0.9179 16 1 7.9561 3.6567 -1.0429 17 1 10.0484 2.4324 -1.0926 18 6 5.2013 0.6290 3.9552 19 6 5.5401 2.0593 4.3795 20 6 5.7999 2.0929 5.8281 21 7 6.0005 2.1188 6.9459 22 6 3.6908 -0.7379 0.0109 23 6 2.2233 -1.1099 0.0005 24 8 1.7945 -2.2443 -0.0071 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8901 0.5137 28 1 1.8982 1.9384 0.7098 29 1 2.3313 1.6440 -0.9998 30 1 5.8362 -0.3940 0.8094 31 1 6.8826 -0.4257 2.2489 32 1 7.9943 -0.6882 0.3342 33 1 4.2674 0.3219 4.4259 34 1 6.0024 -0.0416 4.2661 35 1 6.4270 2.3970 3.8435 36 1 4.7021 2.7158 4.1455 37 1 4.1208 -0.8530 -0.9840 38 1 4.2337 -1.3455 0.7349 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067230916.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:39 Heat of formation + Delta-G solvation = -62.576507 kcal Electronic energy + Delta-G solvation = -22253.373495 eV Core-core repulsion = 18902.189810 eV Total energy + Delta-G solvation = -3351.183685 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.97197 -40.30960 -38.04533 -37.31759 -36.87741 -34.84950 -34.05101 -32.22110 -28.73663 -28.55161 -27.84187 -25.72048 -24.93072 -23.14303 -20.71718 -20.12202 -19.26875 -18.52145 -17.99146 -17.71794 -17.10935 -16.83067 -16.24582 -15.97700 -15.71048 -15.50764 -14.90004 -14.69823 -14.59398 -14.57783 -14.37695 -13.73320 -13.64970 -13.42539 -13.33233 -13.24862 -13.14494 -13.11862 -12.75001 -12.53765 -12.35836 -12.32603 -11.90472 -11.79534 -11.07591 -10.94302 -10.73250 -10.40459 -9.72520 -9.50082 -8.46130 -6.25424 1.45594 1.53439 1.69851 1.72307 1.74372 1.75637 1.90408 2.07569 2.16596 2.68037 3.10106 3.27980 3.33234 3.45314 3.58979 3.90027 4.06505 4.11943 4.37741 4.44478 4.47635 4.51048 4.65424 4.70203 4.76845 4.78367 4.83958 4.84736 4.97604 5.02099 5.09148 5.52833 5.65678 5.96905 6.03310 6.25728 6.50163 6.59039 6.69917 7.07295 7.23513 7.52809 8.89897 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.011731 B = 0.006940 C = 0.004968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.322641 B = 4033.730475 C = 5634.293305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.615 5.615 3 C 0.121 3.879 4 C -0.117 4.117 5 H 0.142 0.858 6 C 0.526 3.474 7 O -0.575 6.575 8 N -0.590 5.590 9 C 0.228 3.772 10 C -0.609 4.609 11 H 0.063 0.937 12 C -0.014 4.014 13 N -0.935 5.935 14 Si 1.100 2.900 15 H -0.278 1.278 16 H -0.266 1.266 17 H -0.298 1.298 18 C 0.127 3.873 19 C -0.032 4.032 20 C 0.244 3.756 21 N -0.489 5.489 22 C -0.136 4.136 23 C 0.509 3.491 24 O -0.583 6.583 25 H 0.074 0.926 26 H 0.057 0.943 27 H 0.094 0.906 28 H 0.096 0.904 29 H 0.111 0.889 30 H 0.039 0.961 31 H 0.017 0.983 32 H 0.262 0.738 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.123 0.877 36 H 0.119 0.881 37 H 0.130 0.870 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.795 4.847 -2.659 11.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.348 5.348 3 C -0.001 4.001 4 C -0.138 4.138 5 H 0.159 0.841 6 C 0.315 3.685 7 O -0.456 6.456 8 N -0.319 5.319 9 C 0.107 3.893 10 C -0.648 4.648 11 H 0.081 0.919 12 C -0.214 4.214 13 N -0.572 5.572 14 Si 0.925 3.075 15 H -0.203 1.203 16 H -0.191 1.191 17 H -0.224 1.224 18 C 0.002 3.998 19 C -0.073 4.073 20 C -0.073 4.073 21 N -0.167 5.167 22 C -0.176 4.176 23 C 0.297 3.703 24 O -0.464 6.464 25 H 0.092 0.908 26 H 0.076 0.924 27 H 0.112 0.888 28 H 0.114 0.886 29 H 0.129 0.871 30 H 0.057 0.943 31 H 0.035 0.965 32 H 0.072 0.928 33 H 0.098 0.902 34 H 0.106 0.894 35 H 0.141 0.859 36 H 0.137 0.863 37 H 0.148 0.852 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.018 5.036 -1.538 10.443 hybrid contribution -0.924 -0.880 0.683 1.447 sum -9.942 4.155 -0.855 10.809 Atomic orbital electron populations 1.21700 0.76713 1.03497 1.02879 1.48269 1.07605 1.07232 1.71674 1.22194 0.87366 0.86793 1.03755 1.22284 1.00608 0.97571 0.93345 0.84070 1.20445 0.81512 0.76101 0.90448 1.90618 1.41313 1.48574 1.65083 1.47926 1.11553 1.65940 1.06524 1.19508 0.83544 0.95950 0.90318 1.22499 1.14741 0.93794 1.33764 0.91869 1.26729 0.96274 1.03749 0.94693 1.70938 1.42419 0.98706 1.45142 0.83096 0.75630 0.72261 0.76541 1.20326 1.19104 1.22414 1.21226 1.02723 0.95165 0.80689 1.19712 1.06080 1.00408 0.81074 1.29284 0.91310 0.91737 0.94970 1.81194 1.11295 1.10106 1.14085 1.22335 0.93552 0.95708 1.06001 1.21225 0.90233 0.84230 0.74580 1.90659 1.79538 1.22845 1.53370 0.90797 0.92408 0.88785 0.88591 0.87067 0.94284 0.96502 0.92805 0.90189 0.89442 0.85890 0.86303 0.85158 0.88845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.88 10.96 127.77 1.40 3.28 16 2 N -0.62 -15.89 3.33 -842.76 -2.81 -18.70 16 3 C 0.12 2.68 6.66 86.83 0.58 3.26 16 4 C -0.12 -3.17 2.58 -10.48 -0.03 -3.20 16 5 H 0.14 3.85 7.39 -2.39 -0.02 3.83 16 6 C 0.53 16.78 6.86 87.66 0.60 17.38 16 7 O -0.57 -19.98 15.25 -3.05 -0.05 -20.02 16 8 N -0.59 -19.12 2.48 -826.17 -2.05 -21.17 16 9 C 0.23 8.55 4.05 85.63 0.35 8.90 16 10 C -0.61 -25.41 8.69 25.60 0.22 -25.18 16 11 H 0.06 2.57 7.78 -2.91 -0.02 2.54 16 12 C -0.01 -0.63 5.46 84.65 0.46 -0.17 16 13 N -0.93 -47.44 13.65 21.44 0.29 -47.14 16 14 Si 1.10 41.59 29.90 68.60 2.05 43.64 16 15 H -0.28 -10.00 7.11 99.48 0.71 -9.30 16 16 H -0.27 -9.15 7.11 99.48 0.71 -8.44 16 17 H -0.30 -12.02 7.11 99.48 0.71 -11.31 16 18 C 0.13 3.61 5.33 86.38 0.46 4.07 16 19 C -0.03 -0.81 5.99 28.79 0.17 -0.64 16 20 C 0.24 6.91 15.43 89.44 1.38 8.29 16 21 N -0.49 -16.13 18.54 20.01 0.37 -15.76 16 22 C -0.14 -3.89 5.22 30.62 0.16 -3.73 16 23 C 0.51 16.30 8.02 87.93 0.71 17.01 16 24 O -0.58 -23.08 17.60 -3.04 -0.05 -23.14 16 25 H 0.07 1.21 8.14 -2.38 -0.02 1.20 16 26 H 0.06 1.34 7.93 -2.39 -0.02 1.32 16 27 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 28 H 0.10 2.16 7.05 -2.39 -0.02 2.14 16 29 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.04 1.48 4.84 -2.39 -0.01 1.47 16 31 H 0.02 0.69 7.66 -2.39 -0.02 0.67 16 32 H 0.26 13.18 7.22 -92.71 -0.67 12.51 16 33 H 0.08 2.27 7.63 -2.39 -0.02 2.25 16 34 H 0.09 2.39 7.79 -2.39 -0.02 2.38 16 35 H 0.12 3.28 8.04 -2.39 -0.02 3.26 16 36 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 37 H 0.13 3.31 8.14 -2.39 -0.02 3.29 16 38 H 0.09 2.94 6.66 -2.39 -0.02 2.92 16 Total: -1.00 -61.57 328.03 5.40 -56.17 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: 1.18 Total: 16.85 kcal Atomic # 6 Polarization: 22.81 SS G_CDS: 6.46 Total: 29.27 kcal Atomic # 7 Polarization: -98.58 SS G_CDS: -4.19 Total: -102.77 kcal Atomic # 8 Polarization: -43.06 SS G_CDS: -0.10 Total: -43.16 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.05 Total: 43.64 kcal Total: -61.57 5.40 -56.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067230916.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.407 kcal (2) G-P(sol) polarization free energy of solvation -61.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds