Wall clock time and date at job start Tue Mar 31 2020 00:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47224 * 2 1 4 4 C 1.37097 * 120.00087 * 97.11755 * 3 2 1 5 5 H 1.07993 * 119.99894 * 165.93645 * 4 3 2 6 6 C 1.38954 * 119.99974 * 345.93119 * 4 3 2 7 7 N 1.31411 * 119.99683 * 339.64020 * 6 4 3 8 8 Si 1.86794 * 119.99986 * 159.63381 * 6 4 3 9 9 H 1.48502 * 109.47169 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46918 * 120.00140 * 8 6 4 11 11 H 1.48500 * 109.47119 * 240.00190 * 8 6 4 12 12 C 1.34778 * 120.00024 * 277.12097 * 3 2 1 13 13 O 1.21291 * 120.00086 * 5.00459 * 12 3 2 14 14 C 1.50699 * 119.99847 * 185.00846 * 12 3 2 15 15 H 1.08995 * 109.47069 * 338.10408 * 14 12 3 16 16 C 1.53005 * 109.47080 * 98.10516 * 14 12 3 17 17 C 1.52999 * 109.46918 * 218.10214 * 14 12 3 18 18 C 1.50700 * 109.47348 * 175.00015 * 17 14 12 19 19 C 1.38271 * 119.98775 * 89.99724 * 18 17 14 20 20 C 1.38218 * 120.05202 * 180.02562 * 19 18 17 21 21 C 1.38219 * 120.02362 * 0.25325 * 20 19 18 22 22 C 1.38436 * 119.97423 * 359.43145 * 21 20 19 23 23 F 1.35101 * 120.02533 * 180.29266 * 22 21 20 24 24 C 1.38172 * 119.98617 * 269.98124 * 18 17 14 25 25 H 1.08997 * 109.47451 * 299.99976 * 1 2 3 26 26 H 1.09007 * 109.46666 * 60.00393 * 1 2 3 27 27 H 1.09004 * 109.46992 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47167 * 239.99666 * 2 1 3 29 29 H 1.09000 * 109.47260 * 119.99901 * 2 1 3 30 30 H 0.97005 * 119.99904 * 180.02562 * 7 6 4 31 31 H 1.08999 * 109.47219 * 305.38154 * 16 14 12 32 32 H 1.09002 * 109.47304 * 65.37955 * 16 14 12 33 33 H 1.09006 * 109.46882 * 185.37620 * 16 14 12 34 34 H 1.09000 * 109.47370 * 54.99937 * 17 14 12 35 35 H 1.09004 * 109.47536 * 295.00308 * 17 14 12 36 36 H 1.08005 * 119.97152 * 0.02562 * 19 18 17 37 37 H 1.08004 * 119.98685 * 179.97438 * 20 19 18 38 38 H 1.08002 * 120.01203 * 179.72120 * 21 20 19 39 39 H 1.07998 * 120.01296 * 359.97438 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3855 1.9785 1.1781 5 1 2.9517 2.8980 1.1639 6 6 2.0292 1.4007 2.3906 7 7 1.0355 0.5423 2.4424 8 14 2.9626 1.8441 3.9466 9 1 4.0282 2.8262 3.6218 10 1 2.0257 2.4392 4.9333 11 1 3.5756 0.6200 4.5219 12 6 2.1066 2.0648 -1.1582 13 8 1.6973 1.5699 -2.1872 14 6 2.7138 3.4439 -1.1748 15 1 2.6644 3.8747 -0.1748 16 6 4.1750 3.3525 -1.6191 17 6 1.9384 4.3308 -2.1510 18 6 2.4664 5.7404 -2.0772 19 6 3.5028 6.1343 -2.9035 20 6 3.9885 7.4266 -2.8365 21 6 3.4420 8.3252 -1.9397 22 6 2.4000 7.9338 -1.1165 23 9 1.8611 8.8130 -0.2437 24 6 1.9145 6.6387 -1.1842 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 0.7865 0.1392 3.2889 31 1 4.7054 2.6460 -0.9807 32 1 4.2196 3.0117 -2.6535 33 1 4.6410 4.3347 -1.5398 34 1 0.8811 4.3246 -1.8864 35 1 2.0614 3.9494 -3.1647 36 1 3.9331 5.4316 -3.6017 37 1 4.7983 7.7330 -3.4821 38 1 3.8246 9.3336 -1.8844 39 1 1.1046 6.3310 -0.5394 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068232021.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:18 Heat of formation + Delta-G solvation = -58.262275 kcal Electronic energy + Delta-G solvation = -21940.883666 eV Core-core repulsion = 18569.967099 eV Total energy + Delta-G solvation = -3370.916567 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.81575 -39.47570 -38.49077 -35.27543 -34.16823 -31.52965 -31.04378 -30.35339 -29.32175 -26.53376 -24.85085 -23.65529 -22.56776 -21.74706 -20.40089 -18.94181 -17.23564 -16.68698 -16.23435 -16.13849 -16.03418 -15.50788 -14.51471 -14.40490 -14.19292 -13.78043 -13.46475 -13.35563 -13.17041 -12.56527 -12.45274 -12.23283 -12.01405 -11.82378 -11.59944 -11.34660 -11.21780 -11.10383 -10.92112 -10.79012 -10.59399 -10.53556 -10.35680 -9.98677 -9.64495 -8.94186 -8.87810 -8.56182 -8.25026 -7.74734 -6.37190 -3.90742 1.22336 1.27282 3.07511 3.20081 3.23011 3.62783 3.89823 4.06436 4.29127 4.66736 4.81638 4.92454 5.01590 5.15823 5.28933 5.43310 5.47620 5.67950 5.80401 5.93645 6.06591 6.11849 6.20304 6.22585 6.30466 6.34710 6.39536 6.61671 6.61983 6.69335 6.79259 6.81516 6.90121 6.97746 7.04972 7.34591 7.41638 7.77432 7.84178 8.43292 9.06653 9.54471 9.94339 10.60149 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.016836 B = 0.005382 C = 0.004590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.739744 B = 5201.201585 C = 6099.327092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.139 3.861 3 N -0.439 5.439 4 C -0.336 4.336 5 H 0.101 0.899 6 C 0.036 3.964 7 N -0.858 5.858 8 Si 0.914 3.086 9 H -0.269 1.269 10 H -0.282 1.282 11 H -0.280 1.280 12 C 0.460 3.540 13 O -0.610 6.610 14 C -0.094 4.094 15 H 0.094 0.906 16 C -0.135 4.135 17 C -0.065 4.065 18 C -0.036 4.036 19 C -0.126 4.126 20 C -0.093 4.093 21 C -0.167 4.167 22 C 0.097 3.903 23 F -0.144 7.144 24 C -0.150 4.150 25 H 0.091 0.909 26 H 0.027 0.973 27 H 0.030 0.970 28 H 0.032 0.968 29 H 0.089 0.911 30 H 0.267 0.733 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.793 10.127 -5.342 12.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.016 3.984 3 N -0.156 5.156 4 C -0.463 4.463 5 H 0.118 0.882 6 C -0.169 4.169 7 N -0.496 5.496 8 Si 0.741 3.259 9 H -0.193 1.193 10 H -0.208 1.208 11 H -0.206 1.206 12 C 0.248 3.752 13 O -0.498 6.498 14 C -0.115 4.115 15 H 0.112 0.888 16 C -0.192 4.192 17 C -0.102 4.102 18 C -0.036 4.036 19 C -0.144 4.144 20 C -0.111 4.111 21 C -0.186 4.186 22 C 0.078 3.922 23 F -0.122 7.122 24 C -0.169 4.169 25 H 0.110 0.890 26 H 0.046 0.954 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.107 0.893 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.147 0.853 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.468 9.758 -5.617 12.113 hybrid contribution 0.283 0.354 1.234 1.314 sum 4.750 10.112 -4.383 12.001 Atomic orbital electron populations 1.22050 0.96784 0.99379 1.02066 1.21096 0.94606 0.83046 0.99610 1.43821 1.54964 1.11216 1.05574 1.19728 1.34056 1.09742 0.82791 0.88154 1.25215 0.95416 0.97049 0.99186 1.70118 1.23381 1.29541 1.26533 0.86067 0.79772 0.78517 0.81540 1.19284 1.20807 1.20553 1.19950 0.84003 0.87210 0.84016 1.90510 1.54703 1.71051 1.33500 1.21058 0.95509 0.94500 1.00424 0.88765 1.21693 0.94844 1.01395 1.01302 1.20510 0.99745 0.88844 1.01139 1.19916 0.94403 0.95787 0.93528 1.21189 0.97019 0.96132 1.00090 1.20957 0.99342 0.93136 0.97637 1.21052 0.97868 1.01226 0.98427 1.17713 0.95489 0.87774 0.91240 1.91484 1.85150 1.68205 1.67395 1.21150 1.02700 0.91810 1.01251 0.89016 0.95365 0.95105 0.94915 0.89301 0.92229 0.92301 0.92695 0.92608 0.90731 0.89909 0.85268 0.85315 0.85265 0.84568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 9.65 37.16 0.36 -3.06 16 2 C 0.14 3.43 5.19 -4.04 -0.02 3.40 16 3 N -0.44 -10.92 2.64 -114.81 -0.30 -11.22 16 4 C -0.34 -8.28 9.11 -14.93 -0.14 -8.41 16 5 H 0.10 2.35 5.83 -52.49 -0.31 2.05 16 6 C 0.04 0.88 4.94 -17.47 -0.09 0.79 16 7 N -0.86 -21.49 8.42 55.50 0.47 -21.02 16 8 Si 0.91 19.07 29.60 -169.99 -5.03 14.04 16 9 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 10 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 11 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 12 C 0.46 10.88 6.52 -10.99 -0.07 10.80 16 13 O -0.61 -15.85 15.91 5.55 0.09 -15.76 16 14 C -0.09 -1.78 2.22 -91.77 -0.20 -1.98 16 15 H 0.09 1.86 5.79 -51.93 -0.30 1.56 16 16 C -0.13 -2.23 8.57 37.16 0.32 -1.91 16 17 C -0.06 -1.08 4.46 -27.88 -0.12 -1.20 16 18 C -0.04 -0.52 4.72 -104.63 -0.49 -1.01 16 19 C -0.13 -1.54 8.10 -39.58 -0.32 -1.86 16 20 C -0.09 -0.99 10.04 -39.60 -0.40 -1.39 16 21 C -0.17 -1.93 10.03 -39.52 -0.40 -2.33 16 22 C 0.10 1.33 7.30 -39.42 -0.29 1.04 16 23 F -0.14 -2.05 17.27 2.25 0.04 -2.01 16 24 C -0.15 -2.16 9.68 -39.52 -0.38 -2.55 16 25 H 0.09 2.32 6.09 -51.93 -0.32 2.01 16 26 H 0.03 0.67 7.87 -51.93 -0.41 0.27 16 27 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.03 0.80 7.72 -51.93 -0.40 0.39 16 29 H 0.09 2.24 6.05 -51.93 -0.31 1.93 16 30 H 0.27 6.36 8.31 -40.82 -0.34 6.02 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.05 0.80 6.63 -51.93 -0.34 0.45 16 34 H 0.07 1.30 8.08 -51.93 -0.42 0.88 16 35 H 0.08 1.38 7.96 -51.93 -0.41 0.97 16 36 H 0.13 1.41 8.04 -52.48 -0.42 0.98 16 37 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 38 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 39 H 0.14 1.94 8.06 -52.49 -0.42 1.52 16 LS Contribution 322.66 15.07 4.86 4.86 Total: -1.00 -27.77 322.66 -7.44 -35.21 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -5.32 Total: 5.57 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -2.24 Total: -9.66 kcal Atomic # 7 Polarization: -32.41 SS G_CDS: 0.16 Total: -32.24 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: 0.09 Total: -15.76 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.04 Total: -2.01 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.04 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -27.77 -7.44 -35.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068232021.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.053 kcal (2) G-P(sol) polarization free energy of solvation -27.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds