Wall clock time and date at job start Tue Mar 31 2020 00:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47224 * 2 1 4 4 C 1.37097 * 120.00087 * 97.11755 * 3 2 1 5 5 H 1.07993 * 119.99894 * 165.93645 * 4 3 2 6 6 C 1.38954 * 119.99974 * 345.93119 * 4 3 2 7 7 N 1.31411 * 119.99683 * 339.64020 * 6 4 3 8 8 Si 1.86794 * 119.99986 * 159.63381 * 6 4 3 9 9 H 1.48502 * 109.47169 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46918 * 120.00140 * 8 6 4 11 11 H 1.48500 * 109.47119 * 240.00190 * 8 6 4 12 12 C 1.34778 * 120.00024 * 277.12097 * 3 2 1 13 13 O 1.21291 * 120.00086 * 5.00459 * 12 3 2 14 14 C 1.50699 * 119.99847 * 185.00846 * 12 3 2 15 15 H 1.08995 * 109.47069 * 338.10408 * 14 12 3 16 16 C 1.53005 * 109.47080 * 98.10516 * 14 12 3 17 17 C 1.52999 * 109.46918 * 218.10214 * 14 12 3 18 18 C 1.50700 * 109.47348 * 175.00015 * 17 14 12 19 19 C 1.38271 * 119.98775 * 89.99724 * 18 17 14 20 20 C 1.38218 * 120.05202 * 180.02562 * 19 18 17 21 21 C 1.38219 * 120.02362 * 0.25325 * 20 19 18 22 22 C 1.38436 * 119.97423 * 359.43145 * 21 20 19 23 23 F 1.35101 * 120.02533 * 180.29266 * 22 21 20 24 24 C 1.38172 * 119.98617 * 269.98124 * 18 17 14 25 25 H 1.08997 * 109.47451 * 299.99976 * 1 2 3 26 26 H 1.09007 * 109.46666 * 60.00393 * 1 2 3 27 27 H 1.09004 * 109.46992 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47167 * 239.99666 * 2 1 3 29 29 H 1.09000 * 109.47260 * 119.99901 * 2 1 3 30 30 H 0.97005 * 119.99904 * 180.02562 * 7 6 4 31 31 H 1.08999 * 109.47219 * 305.38154 * 16 14 12 32 32 H 1.09002 * 109.47304 * 65.37955 * 16 14 12 33 33 H 1.09006 * 109.46882 * 185.37620 * 16 14 12 34 34 H 1.09000 * 109.47370 * 54.99937 * 17 14 12 35 35 H 1.09004 * 109.47536 * 295.00308 * 17 14 12 36 36 H 1.08005 * 119.97152 * 0.02562 * 19 18 17 37 37 H 1.08004 * 119.98685 * 179.97438 * 20 19 18 38 38 H 1.08002 * 120.01203 * 179.72120 * 21 20 19 39 39 H 1.07998 * 120.01296 * 359.97438 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3855 1.9785 1.1781 5 1 2.9517 2.8980 1.1639 6 6 2.0292 1.4007 2.3906 7 7 1.0355 0.5423 2.4424 8 14 2.9626 1.8441 3.9466 9 1 4.0282 2.8262 3.6218 10 1 2.0257 2.4392 4.9333 11 1 3.5756 0.6200 4.5219 12 6 2.1066 2.0648 -1.1582 13 8 1.6973 1.5699 -2.1872 14 6 2.7138 3.4439 -1.1748 15 1 2.6644 3.8747 -0.1748 16 6 4.1750 3.3525 -1.6191 17 6 1.9384 4.3308 -2.1510 18 6 2.4664 5.7404 -2.0772 19 6 3.5028 6.1343 -2.9035 20 6 3.9885 7.4266 -2.8365 21 6 3.4420 8.3252 -1.9397 22 6 2.4000 7.9338 -1.1165 23 9 1.8611 8.8130 -0.2437 24 6 1.9145 6.6387 -1.1842 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 0.7865 0.1392 3.2889 31 1 4.7054 2.6460 -0.9807 32 1 4.2196 3.0117 -2.6535 33 1 4.6410 4.3347 -1.5398 34 1 0.8811 4.3246 -1.8864 35 1 2.0614 3.9494 -3.1647 36 1 3.9331 5.4316 -3.6017 37 1 4.7983 7.7330 -3.4821 38 1 3.8246 9.3336 -1.8844 39 1 1.1046 6.3310 -0.5394 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068232021.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:17 Heat of formation + Delta-G solvation = -70.936433 kcal Electronic energy + Delta-G solvation = -21941.433259 eV Core-core repulsion = 18569.967099 eV Total energy + Delta-G solvation = -3371.466160 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.87071 -40.93217 -39.90872 -37.08612 -35.66931 -33.44155 -32.33533 -31.55108 -30.90143 -27.77084 -26.75546 -25.25054 -23.65672 -23.12551 -21.86755 -20.76601 -18.52185 -18.40059 -17.74386 -17.26318 -17.05030 -16.58573 -16.29091 -16.21005 -15.69768 -15.12145 -14.95118 -14.75254 -14.43740 -14.18485 -13.91191 -13.74240 -13.44736 -13.15712 -12.98768 -12.87669 -12.85020 -12.71123 -12.51178 -12.34887 -12.07476 -12.00145 -11.84360 -11.69963 -11.48572 -10.86649 -10.18703 -9.84376 -9.68617 -9.55840 -8.24522 -5.84487 0.23111 0.29770 1.40594 1.49314 1.60322 2.05098 2.30997 2.64989 3.00156 3.13901 3.30851 3.77308 3.87531 4.07412 4.14548 4.26392 4.31224 4.35736 4.46534 4.51652 4.71295 4.78352 4.83880 4.88207 4.93867 4.95011 5.04829 5.12086 5.17158 5.19646 5.29741 5.32337 5.41758 5.43446 5.47765 5.65974 5.85423 5.88339 6.00293 6.51256 7.16164 7.64918 8.04897 8.73624 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.016836 B = 0.005382 C = 0.004590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.739744 B = 5201.201585 C = 6099.327092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.139 3.861 3 N -0.452 5.452 4 C -0.355 4.355 5 H 0.109 0.891 6 C -0.003 4.003 7 N -0.881 5.881 8 Si 0.981 3.019 9 H -0.260 1.260 10 H -0.283 1.283 11 H -0.279 1.279 12 C 0.449 3.551 13 O -0.640 6.640 14 C -0.087 4.087 15 H 0.085 0.915 16 C -0.126 4.126 17 C -0.054 4.054 18 C -0.049 4.049 19 C -0.124 4.124 20 C -0.081 4.081 21 C -0.158 4.158 22 C 0.079 3.921 23 F -0.152 7.152 24 C -0.167 4.167 25 H 0.075 0.925 26 H 0.013 0.987 27 H 0.052 0.948 28 H 0.028 0.972 29 H 0.081 0.919 30 H 0.270 0.730 31 H 0.046 0.954 32 H 0.060 0.940 33 H 0.083 0.917 34 H 0.054 0.946 35 H 0.081 0.919 36 H 0.146 0.854 37 H 0.169 0.831 38 H 0.156 0.844 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.872 11.880 -5.683 14.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.016 3.984 3 N -0.169 5.169 4 C -0.482 4.482 5 H 0.127 0.873 6 C -0.206 4.206 7 N -0.519 5.519 8 Si 0.806 3.194 9 H -0.184 1.184 10 H -0.209 1.209 11 H -0.204 1.204 12 C 0.239 3.761 13 O -0.529 6.529 14 C -0.108 4.108 15 H 0.103 0.897 16 C -0.183 4.183 17 C -0.092 4.092 18 C -0.050 4.050 19 C -0.142 4.142 20 C -0.098 4.098 21 C -0.176 4.176 22 C 0.060 3.940 23 F -0.131 7.131 24 C -0.186 4.186 25 H 0.093 0.907 26 H 0.032 0.968 27 H 0.071 0.929 28 H 0.046 0.954 29 H 0.099 0.901 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.102 0.898 34 H 0.073 0.927 35 H 0.100 0.900 36 H 0.164 0.836 37 H 0.186 0.814 38 H 0.174 0.826 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 6.548 11.518 -5.957 14.527 hybrid contribution -0.402 -0.191 1.296 1.370 sum 6.146 11.327 -4.661 13.704 Atomic orbital electron populations 1.21882 0.96243 1.00313 1.00357 1.21045 0.95019 0.83477 0.98840 1.44061 1.55201 1.11356 1.06280 1.20039 1.34702 1.10457 0.82983 0.87322 1.26012 0.95802 0.96986 1.01753 1.70205 1.24094 1.30227 1.27353 0.85049 0.78486 0.78262 0.77635 1.18385 1.20948 1.20419 1.20806 0.83424 0.88701 0.83211 1.90474 1.55894 1.72188 1.34335 1.21021 0.97213 0.91755 1.00814 0.89725 1.21646 0.92750 1.02733 1.01188 1.20325 0.98418 0.90307 1.00147 1.19667 0.95957 0.94235 0.95093 1.21426 0.95959 0.97365 0.99429 1.21371 0.99425 0.91911 0.97108 1.21426 0.96401 1.02643 0.97153 1.17916 0.96604 0.87408 0.92098 1.91460 1.85477 1.68295 1.67850 1.21125 1.03016 0.92709 1.01712 0.90678 0.96763 0.92921 0.95352 0.90110 0.92026 0.93454 0.92110 0.89787 0.92749 0.90025 0.83585 0.81397 0.82628 0.85904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.27 9.65 71.98 0.69 -5.57 16 2 C 0.14 7.01 5.19 86.38 0.45 7.46 16 3 N -0.45 -22.99 2.64 -635.54 -1.68 -24.67 16 4 C -0.35 -17.65 9.11 84.04 0.77 -16.89 16 5 H 0.11 5.10 5.83 -2.91 -0.02 5.09 16 6 C 0.00 -0.15 4.94 84.93 0.42 0.27 16 7 N -0.88 -44.52 8.42 21.66 0.18 -44.33 16 8 Si 0.98 38.83 29.60 68.60 2.03 40.86 16 9 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 10 H -0.28 -11.23 7.11 99.48 0.71 -10.52 16 11 H -0.28 -10.92 7.11 99.48 0.71 -10.21 16 12 C 0.45 21.67 6.52 87.66 0.57 22.25 16 13 O -0.64 -34.00 15.91 -3.06 -0.05 -34.05 16 14 C -0.09 -3.31 2.22 -11.54 -0.03 -3.34 16 15 H 0.08 3.37 5.79 -2.39 -0.01 3.36 16 16 C -0.13 -3.97 8.57 71.98 0.62 -3.35 16 17 C -0.05 -1.81 4.46 29.85 0.13 -1.68 16 18 C -0.05 -1.36 4.72 -19.87 -0.09 -1.45 16 19 C -0.12 -2.63 8.10 22.27 0.18 -2.45 16 20 C -0.08 -1.37 10.04 22.26 0.22 -1.14 16 21 C -0.16 -3.09 10.03 22.31 0.22 -2.87 16 22 C 0.08 2.04 7.30 22.37 0.16 2.20 16 23 F -0.15 -4.23 17.27 44.97 0.78 -3.45 16 24 C -0.17 -4.77 9.68 22.31 0.22 -4.55 16 25 H 0.07 3.89 6.09 -2.39 -0.01 3.88 16 26 H 0.01 0.67 7.87 -2.38 -0.02 0.66 16 27 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.03 1.41 7.72 -2.39 -0.02 1.40 16 29 H 0.08 4.17 6.05 -2.39 -0.01 4.15 16 30 H 0.27 12.88 8.31 -92.70 -0.77 12.11 16 31 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.08 2.17 6.63 -2.38 -0.02 2.15 16 34 H 0.05 1.99 8.08 -2.39 -0.02 1.97 16 35 H 0.08 2.71 7.96 -2.39 -0.02 2.69 16 36 H 0.15 2.61 8.04 -2.91 -0.02 2.59 16 37 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16 38 H 0.16 2.22 8.06 -2.91 -0.02 2.20 16 39 H 0.12 3.69 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -60.38 322.66 6.85 -53.53 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: 1.05 Total: 23.22 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: 4.54 Total: -11.11 kcal Atomic # 7 Polarization: -67.51 SS G_CDS: -1.50 Total: -69.00 kcal Atomic # 8 Polarization: -34.00 SS G_CDS: -0.05 Total: -34.05 kcal Atomic # 9 Polarization: -4.23 SS G_CDS: 0.78 Total: -3.45 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 2.03 Total: 40.86 kcal Total: -60.38 6.85 -53.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068232021.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.402 kcal (2) G-P(sol) polarization free energy of solvation -60.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds