Wall clock time and date at job start Tue Mar 31 2020 00:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46504 * 109.46749 * 2 1 4 4 C 1.46505 * 120.00149 * 270.00002 * 3 2 1 5 5 C 1.50702 * 109.46836 * 270.00364 * 4 3 2 6 6 H 1.07994 * 120.00445 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99368 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00175 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99773 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47075 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.46791 * 120.00371 * 9 7 5 12 12 H 1.48497 * 109.47353 * 240.00199 * 9 7 5 13 13 C 1.34777 * 119.99736 * 90.00407 * 3 2 1 14 14 O 1.21288 * 119.99593 * 179.97438 * 13 3 2 15 15 C 1.50697 * 120.00369 * 359.97438 * 13 3 2 16 16 C 1.52997 * 109.47466 * 180.02562 * 15 13 3 17 17 C 1.50701 * 109.47212 * 179.97438 * 16 15 13 18 18 C 1.38224 * 120.01147 * 99.99850 * 17 16 15 19 19 C 1.38218 * 120.02596 * 179.97438 * 18 17 16 20 20 C 1.38270 * 120.05109 * 0.02732 * 19 18 17 21 21 C 1.38170 * 120.02397 * 359.97438 * 20 19 18 22 22 C 1.38432 * 120.01370 * 279.72550 * 17 16 15 23 23 F 1.35102 * 120.02704 * 359.97438 * 22 17 16 24 24 H 1.08996 * 109.46795 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46871 * 299.99647 * 1 2 3 26 26 H 1.09001 * 109.47019 * 59.99538 * 1 2 3 27 27 H 1.09003 * 109.46871 * 240.00353 * 2 1 3 28 28 H 1.08994 * 109.47270 * 119.99830 * 2 1 3 29 29 H 1.08998 * 109.46420 * 30.00391 * 4 3 2 30 30 H 1.08995 * 109.46904 * 150.00397 * 4 3 2 31 31 H 0.97004 * 119.99914 * 180.02562 * 8 7 5 32 32 H 1.09002 * 109.47120 * 59.99760 * 15 13 3 33 33 H 1.08998 * 109.46862 * 300.00562 * 15 13 3 34 34 H 1.09002 * 109.47153 * 59.99773 * 16 15 13 35 35 H 1.09001 * 109.46832 * 299.99964 * 16 15 13 36 36 H 1.08002 * 119.98697 * 359.97438 * 18 17 16 37 37 H 1.07999 * 119.97411 * 180.02562 * 19 18 17 38 38 H 1.07995 * 119.98601 * 179.97438 * 20 19 18 39 39 H 1.08004 * 120.01264 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0720 -1.2687 5 6 3.6858 1.8351 -1.7038 6 1 4.3426 1.2304 -1.0963 7 6 4.1490 2.3898 -2.8780 8 7 3.3489 3.1259 -3.6180 9 14 5.9134 2.0969 -3.4170 10 1 6.6011 1.2417 -2.4165 11 1 5.9213 1.4174 -4.7374 12 1 6.6203 3.3983 -3.5258 13 6 2.2430 2.0166 1.1672 14 8 2.6476 3.1599 1.1672 15 6 1.9914 1.3063 2.4723 16 6 2.3223 2.2438 3.6353 17 6 2.0701 1.5337 4.9404 18 6 3.1256 0.9844 5.6438 19 6 2.8947 0.3336 6.8411 20 6 1.6079 0.2306 7.3363 21 6 0.5512 0.7789 6.6348 22 6 0.7820 1.4363 5.4380 23 9 -0.2497 1.9780 4.7543 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.5816 1.6878 -2.0283 30 1 2.0955 3.1411 -1.1383 31 1 3.6747 3.5158 -4.4443 32 1 2.6213 0.4186 2.5302 33 1 0.9434 1.0125 2.5298 34 1 1.6921 3.1313 3.5772 35 1 3.3703 2.5380 3.5778 36 1 4.1311 1.0639 5.2577 37 1 3.7201 -0.0949 7.3902 38 1 1.4286 -0.2785 8.2716 39 1 -0.4539 0.6980 7.0216 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103208069.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:11 Heat of formation + Delta-G solvation = -71.571301 kcal Electronic energy + Delta-G solvation = -21404.189663 eV Core-core repulsion = 18032.695973 eV Total energy + Delta-G solvation = -3371.493690 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.93600 -39.46248 -38.80637 -35.31816 -34.01444 -32.73876 -30.76478 -30.11023 -29.70504 -27.12306 -24.73051 -22.97732 -22.91914 -22.37174 -21.04201 -18.22270 -17.67674 -16.64072 -16.57046 -16.31357 -15.70596 -15.58326 -15.36838 -14.79244 -14.32735 -14.23018 -13.61214 -13.35561 -13.27673 -13.16568 -12.77821 -12.61540 -12.15089 -11.95883 -11.88989 -11.75147 -11.48205 -11.17736 -11.06924 -10.90784 -10.82186 -10.60706 -10.48425 -10.10646 -9.58960 -9.16485 -8.91387 -8.68003 -8.41733 -7.61629 -6.02172 -4.06745 0.99361 1.03259 3.30674 3.37774 3.40086 3.41658 3.49827 3.98490 4.14903 4.45710 4.55758 4.61820 4.77234 5.03219 5.13833 5.21240 5.31124 5.31925 5.34870 5.40913 5.64343 5.69761 5.78060 5.80584 5.88242 5.93431 6.03716 6.11233 6.20117 6.27168 6.29624 6.36347 6.53750 6.74277 7.11279 7.48722 7.59716 7.94738 8.26677 8.47893 8.93343 9.14712 9.58373 11.05914 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.024993 B = 0.003895 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.033987 B = 7186.641245 C = 7674.812616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.598 5.598 4 C 0.245 3.755 5 C -0.524 4.524 6 H 0.057 0.943 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.506 3.494 14 O -0.543 6.543 15 C -0.134 4.134 16 C -0.066 4.066 17 C -0.108 4.108 18 C -0.089 4.089 19 C -0.130 4.130 20 C -0.101 4.101 21 C -0.155 4.155 22 C 0.099 3.901 23 F -0.136 7.136 24 H 0.059 0.941 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.081 0.919 28 H 0.064 0.936 29 H 0.031 0.969 30 H 0.043 0.957 31 H 0.262 0.738 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.134 0.866 37 H 0.128 0.872 38 H 0.129 0.871 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.111 -9.027 19.621 22.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.017 4.017 3 N -0.330 5.330 4 C 0.126 3.874 5 C -0.563 4.563 6 H 0.076 0.924 7 C -0.142 4.142 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.292 3.708 14 O -0.421 6.421 15 C -0.174 4.174 16 C -0.104 4.104 17 C -0.109 4.109 18 C -0.107 4.107 19 C -0.148 4.148 20 C -0.119 4.119 21 C -0.173 4.173 22 C 0.080 3.920 23 F -0.114 7.114 24 H 0.078 0.922 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.100 0.900 28 H 0.082 0.918 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.152 0.848 37 H 0.146 0.854 38 H 0.147 0.853 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.946 -8.291 19.384 21.655 hybrid contribution 0.690 -0.181 -0.535 0.892 sum -4.256 -8.471 18.849 21.099 Atomic orbital electron populations 1.22223 0.96858 1.01353 1.02347 1.21404 0.93483 0.84269 1.02576 1.48258 1.63682 1.13227 1.07788 1.19262 0.96208 0.93659 0.78249 1.21483 0.96963 1.31709 1.06176 0.92445 1.24945 0.97839 0.94973 0.96431 1.69948 1.35580 1.33572 1.14313 0.86449 0.84687 0.78030 0.78283 1.19827 1.20992 1.20885 1.20276 0.78432 0.86929 0.85144 1.90664 1.46009 1.18162 1.87313 1.21677 1.03212 0.99533 0.92984 1.20309 1.04185 0.97547 0.88348 1.20135 0.91775 1.00661 0.98304 1.21059 0.98787 0.96407 0.94424 1.21210 0.97138 1.00004 0.96437 1.20973 0.92193 0.99048 0.99671 1.21138 1.00764 1.00704 0.94745 1.17630 0.84164 0.98126 0.92080 1.91510 1.57143 1.83686 1.79098 0.92241 0.93020 0.92067 0.90045 0.91755 0.95097 0.93929 0.92810 0.89420 0.89595 0.89841 0.89543 0.84847 0.85439 0.85293 0.84940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.38 10.24 37.16 0.38 -2.00 16 2 C 0.11 1.76 5.93 -4.04 -0.02 1.74 16 3 N -0.60 -12.88 2.46 -175.05 -0.43 -13.31 16 4 C 0.25 6.53 5.16 -5.19 -0.03 6.50 16 5 C -0.52 -15.05 9.39 -34.44 -0.32 -15.37 16 6 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.90 13.29 55.43 0.74 -26.16 16 9 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 13 C 0.51 10.69 7.67 -10.99 -0.08 10.60 16 14 O -0.54 -13.84 15.56 5.55 0.09 -13.76 16 15 C -0.13 -2.06 4.23 -27.89 -0.12 -2.18 16 16 C -0.07 -0.96 4.36 -27.88 -0.12 -1.09 16 17 C -0.11 -1.32 5.14 -104.55 -0.54 -1.85 16 18 C -0.09 -0.90 9.67 -39.59 -0.38 -1.28 16 19 C -0.13 -1.09 10.04 -39.58 -0.40 -1.49 16 20 C -0.10 -0.82 10.04 -39.59 -0.40 -1.22 16 21 C -0.15 -1.49 10.03 -39.52 -0.40 -1.88 16 22 C 0.10 1.20 7.24 -39.42 -0.29 0.91 16 23 F -0.14 -1.85 16.66 2.25 0.04 -1.81 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.71 7.22 -51.93 -0.37 0.33 16 26 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 28 H 0.06 0.89 6.44 -51.93 -0.33 0.55 16 29 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 30 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 31 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.09 1.19 7.40 -51.93 -0.38 0.81 16 33 H 0.09 1.22 7.18 -51.93 -0.37 0.85 16 34 H 0.08 1.33 7.89 -51.93 -0.41 0.92 16 35 H 0.09 1.29 7.96 -51.93 -0.41 0.87 16 36 H 0.13 1.19 8.04 -52.49 -0.42 0.77 16 37 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 38 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 39 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 LS Contribution 335.71 15.07 5.06 5.06 Total: -1.00 -33.45 335.71 -7.94 -41.39 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -5.59 Total: -1.43 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: -2.81 Total: -6.98 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: 0.31 Total: -39.47 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: 0.09 Total: -13.76 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.45 -7.94 -41.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103208069.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.178 kcal (2) G-P(sol) polarization free energy of solvation -33.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds