Wall clock time and date at job start Tue Mar 31 2020 00:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46504 * 109.46749 * 2 1 4 4 C 1.46505 * 120.00149 * 270.00002 * 3 2 1 5 5 C 1.50702 * 109.46836 * 270.00364 * 4 3 2 6 6 H 1.07994 * 120.00445 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99368 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00175 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99773 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47075 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.46791 * 120.00371 * 9 7 5 12 12 H 1.48497 * 109.47353 * 240.00199 * 9 7 5 13 13 C 1.34777 * 119.99736 * 90.00407 * 3 2 1 14 14 O 1.21288 * 119.99593 * 179.97438 * 13 3 2 15 15 C 1.50697 * 120.00369 * 359.97438 * 13 3 2 16 16 C 1.52997 * 109.47466 * 180.02562 * 15 13 3 17 17 C 1.50701 * 109.47212 * 179.97438 * 16 15 13 18 18 C 1.38224 * 120.01147 * 99.99850 * 17 16 15 19 19 C 1.38218 * 120.02596 * 179.97438 * 18 17 16 20 20 C 1.38270 * 120.05109 * 0.02732 * 19 18 17 21 21 C 1.38170 * 120.02397 * 359.97438 * 20 19 18 22 22 C 1.38432 * 120.01370 * 279.72550 * 17 16 15 23 23 F 1.35102 * 120.02704 * 359.97438 * 22 17 16 24 24 H 1.08996 * 109.46795 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46871 * 299.99647 * 1 2 3 26 26 H 1.09001 * 109.47019 * 59.99538 * 1 2 3 27 27 H 1.09003 * 109.46871 * 240.00353 * 2 1 3 28 28 H 1.08994 * 109.47270 * 119.99830 * 2 1 3 29 29 H 1.08998 * 109.46420 * 30.00391 * 4 3 2 30 30 H 1.08995 * 109.46904 * 150.00397 * 4 3 2 31 31 H 0.97004 * 119.99914 * 180.02562 * 8 7 5 32 32 H 1.09002 * 109.47120 * 59.99760 * 15 13 3 33 33 H 1.08998 * 109.46862 * 300.00562 * 15 13 3 34 34 H 1.09002 * 109.47153 * 59.99773 * 16 15 13 35 35 H 1.09001 * 109.46832 * 299.99964 * 16 15 13 36 36 H 1.08002 * 119.98697 * 359.97438 * 18 17 16 37 37 H 1.07999 * 119.97411 * 180.02562 * 19 18 17 38 38 H 1.07995 * 119.98601 * 179.97438 * 20 19 18 39 39 H 1.08004 * 120.01264 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0720 -1.2687 5 6 3.6858 1.8351 -1.7038 6 1 4.3426 1.2304 -1.0963 7 6 4.1490 2.3898 -2.8780 8 7 3.3489 3.1259 -3.6180 9 14 5.9134 2.0969 -3.4170 10 1 6.6011 1.2417 -2.4165 11 1 5.9213 1.4174 -4.7374 12 1 6.6203 3.3983 -3.5258 13 6 2.2430 2.0166 1.1672 14 8 2.6476 3.1599 1.1672 15 6 1.9914 1.3063 2.4723 16 6 2.3223 2.2438 3.6353 17 6 2.0701 1.5337 4.9404 18 6 3.1256 0.9844 5.6438 19 6 2.8947 0.3336 6.8411 20 6 1.6079 0.2306 7.3363 21 6 0.5512 0.7789 6.6348 22 6 0.7820 1.4363 5.4380 23 9 -0.2497 1.9780 4.7543 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.5816 1.6878 -2.0283 30 1 2.0955 3.1411 -1.1383 31 1 3.6747 3.5158 -4.4443 32 1 2.6213 0.4186 2.5302 33 1 0.9434 1.0125 2.5298 34 1 1.6921 3.1313 3.5772 35 1 3.3703 2.5380 3.5778 36 1 4.1311 1.0639 5.2577 37 1 3.7201 -0.0949 7.3902 38 1 1.4286 -0.2785 8.2716 39 1 -0.4539 0.6980 7.0216 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103208069.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:10 Heat of formation + Delta-G solvation = -90.802654 kcal Electronic energy + Delta-G solvation = -21405.023597 eV Core-core repulsion = 18032.695973 eV Total energy + Delta-G solvation = -3372.327624 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.86435 -40.87016 -39.86236 -37.02481 -35.24839 -34.75039 -31.73144 -31.47230 -30.80761 -28.96480 -26.16004 -24.62369 -23.87096 -23.64236 -22.05508 -19.85990 -18.67108 -18.49085 -17.92565 -17.47692 -17.23015 -16.58503 -16.44603 -16.40427 -16.03593 -15.09296 -14.89252 -14.76140 -14.56135 -14.20859 -14.08064 -13.80685 -13.63779 -13.48949 -13.25451 -13.09451 -12.79371 -12.70658 -12.59924 -12.43644 -12.19748 -12.08087 -11.86196 -11.77800 -11.69034 -10.66055 -10.63622 -9.86588 -9.56231 -9.45429 -8.23189 -6.38500 0.22557 0.30597 1.35798 1.38376 1.50412 1.81951 2.28956 2.43733 2.70623 3.06123 3.36407 3.51101 3.80170 3.93587 4.01919 4.10893 4.14669 4.26467 4.38650 4.44348 4.46696 4.55844 4.61893 4.84142 4.93519 4.95981 4.98497 5.03604 5.10443 5.18486 5.21266 5.29766 5.36327 5.47667 5.53453 5.57361 5.85099 6.00891 6.05556 6.68959 6.78927 7.27103 7.47151 8.84308 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.024993 B = 0.003895 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.033987 B = 7186.641245 C = 7674.812616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.100 3.900 3 N -0.604 5.604 4 C 0.261 3.739 5 C -0.542 4.542 6 H 0.055 0.945 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.971 3.029 10 H -0.265 1.265 11 H -0.269 1.269 12 H -0.282 1.282 13 C 0.495 3.505 14 O -0.599 6.599 15 C -0.115 4.115 16 C -0.060 4.060 17 C -0.124 4.124 18 C -0.095 4.095 19 C -0.123 4.123 20 C -0.091 4.091 21 C -0.155 4.155 22 C 0.073 3.927 23 F -0.153 7.153 24 H 0.097 0.903 25 H 0.055 0.945 26 H 0.038 0.962 27 H 0.074 0.926 28 H 0.100 0.900 29 H 0.020 0.980 30 H -0.006 1.006 31 H 0.267 0.733 32 H 0.115 0.885 33 H 0.103 0.897 34 H 0.057 0.943 35 H 0.076 0.924 36 H 0.142 0.858 37 H 0.158 0.842 38 H 0.164 0.836 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.289 -11.954 21.978 25.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.022 4.022 3 N -0.335 5.335 4 C 0.140 3.860 5 C -0.581 4.581 6 H 0.073 0.927 7 C -0.194 4.194 8 N -0.570 5.570 9 Si 0.795 3.205 10 H -0.189 1.189 11 H -0.194 1.194 12 H -0.208 1.208 13 C 0.284 3.716 14 O -0.481 6.481 15 C -0.155 4.155 16 C -0.098 4.098 17 C -0.125 4.125 18 C -0.113 4.113 19 C -0.141 4.141 20 C -0.109 4.109 21 C -0.174 4.174 22 C 0.054 3.946 23 F -0.132 7.132 24 H 0.115 0.885 25 H 0.074 0.926 26 H 0.057 0.943 27 H 0.092 0.908 28 H 0.119 0.881 29 H 0.038 0.962 30 H 0.012 0.988 31 H 0.076 0.924 32 H 0.133 0.867 33 H 0.121 0.879 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.160 0.840 37 H 0.176 0.824 38 H 0.181 0.819 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -4.151 -11.267 21.759 24.852 hybrid contribution 0.397 0.720 -1.195 1.451 sum -3.754 -10.548 20.564 23.414 Atomic orbital electron populations 1.22157 0.94846 1.03504 1.01461 1.21746 0.95128 0.81367 1.03987 1.48313 1.63733 1.15131 1.06285 1.18707 0.95447 0.91405 0.80486 1.21745 0.97780 1.31983 1.06561 0.92686 1.25913 1.02622 0.94423 0.96403 1.70073 1.37820 1.34285 1.14807 0.85319 0.78728 0.78027 0.78429 1.18907 1.19365 1.20764 1.21340 0.77011 0.86525 0.86706 1.90628 1.48428 1.20780 1.88234 1.21614 1.04715 0.99714 0.89428 1.20135 1.02883 0.96883 0.89873 1.19928 0.92753 1.02171 0.97634 1.21249 0.98565 0.96390 0.95115 1.21590 0.98357 0.98626 0.95487 1.21422 0.91470 0.97683 1.00333 1.21422 1.02346 0.99918 0.93716 1.17951 0.83737 0.99574 0.93339 1.91462 1.57832 1.84238 1.79688 0.88477 0.92617 0.94276 0.90763 0.88142 0.96154 0.98809 0.92411 0.86663 0.87896 0.92465 0.90576 0.84005 0.82421 0.81867 0.83226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.32 10.24 71.98 0.74 -3.59 16 2 C 0.10 3.19 5.93 86.38 0.51 3.70 16 3 N -0.60 -26.73 2.46 -826.13 -2.03 -28.76 16 4 C 0.26 14.64 5.16 85.63 0.44 15.08 16 5 C -0.54 -32.03 9.39 25.60 0.24 -31.79 16 6 H 0.05 3.20 7.81 -2.91 -0.02 3.18 16 7 C 0.01 0.30 5.46 84.65 0.46 0.76 16 8 N -0.93 -57.52 13.29 21.45 0.28 -57.23 16 9 Si 0.97 45.54 29.54 68.60 2.03 47.57 16 10 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 11 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 12 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 13 C 0.49 21.61 7.67 87.66 0.67 22.28 16 14 O -0.60 -32.43 15.56 -3.05 -0.05 -32.47 16 15 C -0.12 -3.48 4.23 29.85 0.13 -3.36 16 16 C -0.06 -1.78 4.36 29.85 0.13 -1.65 16 17 C -0.12 -2.91 5.14 -19.82 -0.10 -3.01 16 18 C -0.10 -1.72 9.67 22.26 0.22 -1.50 16 19 C -0.12 -1.58 10.04 22.27 0.22 -1.35 16 20 C -0.09 -1.10 10.04 22.26 0.22 -0.88 16 21 C -0.16 -2.57 10.03 22.31 0.22 -2.34 16 22 C 0.07 1.69 7.24 22.37 0.16 1.85 16 23 F -0.15 -4.20 16.66 44.97 0.75 -3.45 16 24 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.05 1.45 7.22 -2.39 -0.02 1.43 16 26 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.07 2.48 8.07 -2.39 -0.02 2.46 16 28 H 0.10 2.48 6.44 -2.39 -0.02 2.47 16 29 H 0.02 1.16 8.07 -2.39 -0.02 1.14 16 30 H -0.01 -0.40 7.42 -2.39 -0.02 -0.42 16 31 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 32 H 0.12 2.87 7.40 -2.39 -0.02 2.85 16 33 H 0.10 2.79 7.18 -2.39 -0.02 2.78 16 34 H 0.06 1.96 7.89 -2.39 -0.02 1.94 16 35 H 0.08 2.36 7.96 -2.39 -0.02 2.34 16 36 H 0.14 2.23 8.04 -2.91 -0.02 2.21 16 37 H 0.16 1.09 8.06 -2.91 -0.02 1.06 16 38 H 0.16 0.87 8.06 -2.91 -0.02 0.84 16 39 H 0.15 1.88 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -77.45 335.71 6.29 -71.16 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: 1.03 Total: 8.99 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: 4.27 Total: -5.80 kcal Atomic # 7 Polarization: -84.25 SS G_CDS: -1.74 Total: -85.99 kcal Atomic # 8 Polarization: -32.43 SS G_CDS: -0.05 Total: -32.47 kcal Atomic # 9 Polarization: -4.20 SS G_CDS: 0.75 Total: -3.45 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -77.45 6.29 -71.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103208069.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.640 kcal (2) G-P(sol) polarization free energy of solvation -77.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds