Wall clock time and date at job start Tue Mar 31 2020 00:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46501 * 109.46961 * 2 1 4 4 C 1.46499 * 119.99634 * 267.13516 * 3 2 1 5 5 C 1.50694 * 109.47237 * 262.02959 * 4 3 2 6 6 H 1.08004 * 120.00144 * 0.02562 * 5 4 3 7 7 C 1.37887 * 119.99900 * 180.02562 * 5 4 3 8 8 N 1.31512 * 119.99724 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99843 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47352 * 89.99947 * 9 7 5 11 11 H 1.48497 * 109.46645 * 210.00074 * 9 7 5 12 12 H 1.48500 * 109.46956 * 329.99542 * 9 7 5 13 13 C 1.34774 * 120.00029 * 87.14276 * 3 2 1 14 14 O 1.21287 * 120.00126 * 3.75994 * 13 3 2 15 15 C 1.50702 * 120.00072 * 183.76111 * 13 3 2 16 16 H 1.09004 * 109.46416 * 311.26671 * 15 13 3 17 17 C 1.53000 * 109.46993 * 71.26507 * 15 13 3 18 18 C 1.50697 * 109.47114 * 191.26775 * 15 13 3 19 19 C 1.38214 * 120.01213 * 299.99963 * 18 15 13 20 20 C 1.38223 * 120.02377 * 179.72484 * 19 18 15 21 21 C 1.38267 * 120.05330 * 0.02562 * 20 19 18 22 22 C 1.38180 * 120.02618 * 359.97438 * 21 20 19 23 23 C 1.38444 * 120.01129 * 119.71978 * 18 15 13 24 24 F 1.35096 * 120.02637 * 0.25906 * 23 18 15 25 25 H 1.09001 * 109.46848 * 300.00327 * 1 2 3 26 26 H 1.08996 * 109.47181 * 60.00033 * 1 2 3 27 27 H 1.09000 * 109.46876 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46848 * 239.99673 * 2 1 3 29 29 H 1.08995 * 109.46444 * 120.00062 * 2 1 3 30 30 H 1.08996 * 109.47367 * 22.03698 * 4 3 2 31 31 H 1.09003 * 109.46719 * 142.02988 * 4 3 2 32 32 H 0.96996 * 119.99585 * 179.97438 * 8 7 5 33 33 H 1.09001 * 109.46934 * 172.47989 * 17 15 13 34 34 H 1.08996 * 109.47171 * 292.48063 * 17 15 13 35 35 H 1.09005 * 109.46962 * 52.48470 * 17 15 13 36 36 H 1.07997 * 119.99136 * 359.70483 * 19 18 15 37 37 H 1.08001 * 119.97762 * 179.97438 * 20 19 18 38 38 H 1.08002 * 119.99041 * 179.97438 * 21 20 19 39 39 H 1.07993 * 120.01200 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3223 2.0506 -1.2672 5 6 3.8036 1.9743 -1.5330 6 1 4.4537 1.4765 -0.8287 7 6 4.3291 2.5400 -2.6754 8 7 3.5374 3.1456 -3.5333 9 14 6.1653 2.4447 -3.0053 10 1 6.4665 1.2116 -3.7760 11 1 6.5899 3.6334 -3.7874 12 1 6.8990 2.4134 -1.7146 13 6 2.1881 2.0360 1.1657 14 8 2.0022 1.4606 2.2171 15 6 2.6089 3.4830 1.1629 16 1 3.4627 3.6117 0.4975 17 6 1.4471 4.3510 0.6755 18 6 2.9937 3.8970 2.5598 19 6 2.0679 3.8207 3.5832 20 6 2.4223 4.1950 4.8658 21 6 3.7029 4.6466 5.1264 22 6 4.6302 4.7237 4.1049 23 6 4.2764 4.3485 2.8197 24 9 5.1823 4.4231 1.8202 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.7821 1.5593 -2.0764 31 1 2.0170 3.0954 -1.2085 32 1 3.9071 3.5439 -4.3367 33 1 1.7030 5.4034 0.7990 34 1 1.2563 4.1448 -0.3777 35 1 0.5542 4.1234 1.2579 36 1 1.0672 3.4688 3.3808 37 1 1.6982 4.1354 5.6648 38 1 3.9786 4.9391 6.1288 39 1 5.6302 5.0769 4.3086 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000109023122.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:19 Heat of formation + Delta-G solvation = -64.349625 kcal Electronic energy + Delta-G solvation = -22502.010712 eV Core-core repulsion = 19130.830178 eV Total energy + Delta-G solvation = -3371.180534 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.51306 -39.76792 -38.29284 -35.19590 -33.95299 -32.69910 -30.57766 -30.21826 -28.89087 -27.00011 -24.58168 -23.09000 -22.94538 -22.32514 -20.86248 -18.21360 -17.29223 -16.82011 -16.33449 -15.86195 -15.60671 -15.17946 -15.02596 -14.40490 -14.36468 -13.85554 -13.61371 -13.40200 -12.82711 -12.71086 -12.67331 -12.23685 -12.10956 -11.97590 -11.65828 -11.64303 -11.50089 -11.18315 -10.95611 -10.78442 -10.69668 -10.46377 -10.41353 -10.04986 -9.70581 -8.98059 -8.68297 -8.53704 -8.33928 -7.70182 -6.18154 -4.24830 1.40365 1.47918 3.24794 3.31840 3.35824 3.43681 3.75708 4.04550 4.36270 4.56856 4.88271 4.98837 5.11309 5.16372 5.34903 5.42441 5.59260 5.64703 5.68273 5.77692 5.81614 5.86865 6.07931 6.16250 6.24218 6.27318 6.33694 6.37650 6.42982 6.47795 6.60943 6.62984 6.76613 6.81913 7.14397 7.26662 7.56409 7.78023 8.06791 8.33274 8.80387 9.03247 9.43217 10.88407 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.014474 B = 0.007315 C = 0.005436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.011066 B = 3826.656969 C = 5149.175316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.114 3.886 3 N -0.594 5.594 4 C 0.228 3.772 5 C -0.539 4.539 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.891 5.891 9 Si 0.893 3.107 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.271 1.271 13 C 0.528 3.472 14 O -0.570 6.570 15 C -0.077 4.077 16 H 0.126 0.874 17 C -0.138 4.138 18 C -0.091 4.091 19 C -0.053 4.053 20 C -0.139 4.139 21 C -0.099 4.099 22 C -0.163 4.163 23 C 0.105 3.895 24 F -0.133 7.133 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.037 0.963 31 H 0.048 0.952 32 H 0.265 0.735 33 H 0.062 0.938 34 H 0.083 0.917 35 H 0.052 0.948 36 H 0.129 0.871 37 H 0.124 0.876 38 H 0.126 0.874 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.721 2.731 11.071 11.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.009 4.009 3 N -0.324 5.324 4 C 0.108 3.892 5 C -0.577 4.577 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.529 5.529 9 Si 0.721 3.279 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.196 1.196 13 C 0.316 3.684 14 O -0.452 6.452 15 C -0.098 4.098 16 H 0.143 0.857 17 C -0.196 4.196 18 C -0.092 4.092 19 C -0.071 4.071 20 C -0.157 4.157 21 C -0.117 4.117 22 C -0.182 4.182 23 C 0.085 3.915 24 F -0.112 7.112 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.101 0.899 35 H 0.071 0.929 36 H 0.147 0.853 37 H 0.142 0.858 38 H 0.144 0.856 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.788 2.521 11.349 12.227 hybrid contribution 1.331 -0.075 -0.650 1.483 sum -2.456 2.446 10.700 11.247 Atomic orbital electron populations 1.22113 0.96882 1.01206 1.01881 1.21244 0.93342 0.83942 1.02392 1.48196 1.63015 1.13161 1.07995 1.19682 0.96333 0.93784 0.79403 1.21507 0.92683 1.36978 1.06547 0.92175 1.24910 0.98278 0.94724 0.95671 1.69911 1.35164 1.36407 1.11434 0.86550 0.85118 0.77677 0.78592 1.20532 1.20971 1.19576 1.20113 0.76577 0.88270 0.83453 1.90584 1.53843 1.69267 1.31460 1.20226 1.02487 0.93205 0.93900 0.85661 1.21847 0.95982 0.98938 1.02787 1.19635 0.92426 1.00631 0.96533 1.20856 0.99490 0.95197 0.91553 1.21124 0.96679 1.01071 0.96875 1.20894 0.93181 0.99223 0.98415 1.21026 1.01071 1.04614 0.91513 1.17622 0.86836 1.01662 0.85338 1.91526 1.65935 1.93925 1.59774 0.92856 0.92602 0.92460 0.90582 0.91231 0.94514 0.93460 0.92513 0.91924 0.89880 0.92860 0.85305 0.85825 0.85616 0.85171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.54 10.22 37.16 0.38 -2.16 16 2 C 0.11 2.12 6.09 -4.04 -0.02 2.09 16 3 N -0.59 -12.59 2.49 -175.06 -0.44 -13.03 16 4 C 0.23 5.35 4.83 -5.20 -0.03 5.32 16 5 C -0.54 -14.14 8.39 -34.44 -0.29 -14.43 16 6 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 7 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16 8 N -0.89 -24.43 13.29 55.43 0.74 -23.69 16 9 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 13 C 0.53 11.21 6.76 -10.99 -0.07 11.13 16 14 O -0.57 -12.79 14.36 5.55 0.08 -12.71 16 15 C -0.08 -1.51 2.07 -92.92 -0.19 -1.70 16 16 H 0.13 2.78 5.85 -51.93 -0.30 2.48 16 17 C -0.14 -2.32 8.65 37.16 0.32 -2.00 16 18 C -0.09 -1.63 4.51 -104.56 -0.47 -2.10 16 19 C -0.05 -0.83 7.91 -39.60 -0.31 -1.15 16 20 C -0.14 -1.83 10.04 -39.58 -0.40 -2.23 16 21 C -0.10 -1.23 10.04 -39.59 -0.40 -1.63 16 22 C -0.16 -2.33 10.03 -39.51 -0.40 -2.73 16 23 C 0.10 1.84 7.25 -39.42 -0.29 1.56 16 24 F -0.13 -2.59 16.19 2.25 0.04 -2.56 16 25 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.08 1.38 8.05 -51.93 -0.42 0.96 16 29 H 0.07 1.31 7.46 -51.93 -0.39 0.93 16 30 H 0.04 0.90 8.01 -51.93 -0.42 0.49 16 31 H 0.05 1.12 4.42 -51.93 -0.23 0.89 16 32 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 33 H 0.06 0.95 8.13 -51.93 -0.42 0.53 16 34 H 0.08 1.49 5.47 -51.93 -0.28 1.20 16 35 H 0.05 0.81 7.65 -51.93 -0.40 0.41 16 36 H 0.13 2.00 7.35 -52.49 -0.39 1.61 16 37 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 38 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 39 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 326.57 15.07 4.92 4.92 Total: -1.00 -29.22 326.57 -7.27 -36.49 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -5.33 Total: 2.93 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: -2.26 Total: -8.32 kcal Atomic # 7 Polarization: -37.02 SS G_CDS: 0.30 Total: -36.72 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.08 Total: -12.71 kcal Atomic # 9 Polarization: -2.59 SS G_CDS: 0.04 Total: -2.56 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.22 -7.27 -36.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109023122.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.859 kcal (2) G-P(sol) polarization free energy of solvation -29.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds