Wall clock time and date at job start Tue Mar 31 2020 00:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46501 * 109.46961 * 2 1 4 4 C 1.46499 * 119.99634 * 267.13516 * 3 2 1 5 5 C 1.50694 * 109.47237 * 262.02959 * 4 3 2 6 6 H 1.08004 * 120.00144 * 0.02562 * 5 4 3 7 7 C 1.37887 * 119.99900 * 180.02562 * 5 4 3 8 8 N 1.31512 * 119.99724 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99843 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47352 * 89.99947 * 9 7 5 11 11 H 1.48497 * 109.46645 * 210.00074 * 9 7 5 12 12 H 1.48500 * 109.46956 * 329.99542 * 9 7 5 13 13 C 1.34774 * 120.00029 * 87.14276 * 3 2 1 14 14 O 1.21287 * 120.00126 * 3.75994 * 13 3 2 15 15 C 1.50702 * 120.00072 * 183.76111 * 13 3 2 16 16 H 1.09004 * 109.46416 * 311.26671 * 15 13 3 17 17 C 1.53000 * 109.46993 * 71.26507 * 15 13 3 18 18 C 1.50697 * 109.47114 * 191.26775 * 15 13 3 19 19 C 1.38214 * 120.01213 * 299.99963 * 18 15 13 20 20 C 1.38223 * 120.02377 * 179.72484 * 19 18 15 21 21 C 1.38267 * 120.05330 * 0.02562 * 20 19 18 22 22 C 1.38180 * 120.02618 * 359.97438 * 21 20 19 23 23 C 1.38444 * 120.01129 * 119.71978 * 18 15 13 24 24 F 1.35096 * 120.02637 * 0.25906 * 23 18 15 25 25 H 1.09001 * 109.46848 * 300.00327 * 1 2 3 26 26 H 1.08996 * 109.47181 * 60.00033 * 1 2 3 27 27 H 1.09000 * 109.46876 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46848 * 239.99673 * 2 1 3 29 29 H 1.08995 * 109.46444 * 120.00062 * 2 1 3 30 30 H 1.08996 * 109.47367 * 22.03698 * 4 3 2 31 31 H 1.09003 * 109.46719 * 142.02988 * 4 3 2 32 32 H 0.96996 * 119.99585 * 179.97438 * 8 7 5 33 33 H 1.09001 * 109.46934 * 172.47989 * 17 15 13 34 34 H 1.08996 * 109.47171 * 292.48063 * 17 15 13 35 35 H 1.09005 * 109.46962 * 52.48470 * 17 15 13 36 36 H 1.07997 * 119.99136 * 359.70483 * 19 18 15 37 37 H 1.08001 * 119.97762 * 179.97438 * 20 19 18 38 38 H 1.08002 * 119.99041 * 179.97438 * 21 20 19 39 39 H 1.07993 * 120.01200 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3223 2.0506 -1.2672 5 6 3.8036 1.9743 -1.5330 6 1 4.4537 1.4765 -0.8287 7 6 4.3291 2.5400 -2.6754 8 7 3.5374 3.1456 -3.5333 9 14 6.1653 2.4447 -3.0053 10 1 6.4665 1.2116 -3.7760 11 1 6.5899 3.6334 -3.7874 12 1 6.8990 2.4134 -1.7146 13 6 2.1881 2.0360 1.1657 14 8 2.0022 1.4606 2.2171 15 6 2.6089 3.4830 1.1629 16 1 3.4627 3.6117 0.4975 17 6 1.4471 4.3510 0.6755 18 6 2.9937 3.8970 2.5598 19 6 2.0679 3.8207 3.5832 20 6 2.4223 4.1950 4.8658 21 6 3.7029 4.6466 5.1264 22 6 4.6302 4.7237 4.1049 23 6 4.2764 4.3485 2.8197 24 9 5.1823 4.4231 1.8202 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.7821 1.5593 -2.0764 31 1 2.0170 3.0954 -1.2085 32 1 3.9071 3.5439 -4.3367 33 1 1.7030 5.4034 0.7990 34 1 1.2563 4.1448 -0.3777 35 1 0.5542 4.1234 1.2579 36 1 1.0672 3.4688 3.3808 37 1 1.6982 4.1354 5.6648 38 1 3.9786 4.9391 6.1288 39 1 5.6302 5.0769 4.3086 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000109023122.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:18 Heat of formation + Delta-G solvation = -79.176070 kcal Electronic energy + Delta-G solvation = -22502.653635 eV Core-core repulsion = 19130.830178 eV Total energy + Delta-G solvation = -3371.823457 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.89231 -41.30402 -39.58812 -36.92271 -35.38141 -34.65067 -32.03042 -31.38978 -30.19420 -28.91208 -26.03920 -24.87929 -24.38783 -23.53322 -22.21167 -19.81993 -18.74950 -18.56171 -17.93574 -17.38716 -17.05704 -16.57762 -16.45116 -16.19730 -15.95985 -15.13206 -14.94400 -14.85222 -14.45050 -14.15969 -14.06188 -13.88860 -13.53339 -13.37514 -13.15328 -12.95168 -12.94437 -12.82001 -12.69798 -12.49361 -12.17315 -12.03560 -11.84325 -11.76034 -11.63705 -10.71120 -10.50735 -9.83580 -9.56706 -9.46451 -8.23764 -6.36700 0.22815 0.34211 1.35707 1.38467 1.47859 1.74037 2.27437 2.41127 2.75436 3.06124 3.36936 3.56405 3.68436 3.92251 4.13489 4.22311 4.24174 4.34794 4.39675 4.45469 4.48451 4.53391 4.73742 4.81408 4.86320 4.96308 5.00624 5.04459 5.05785 5.15798 5.26168 5.28969 5.39885 5.48540 5.54140 5.65230 5.86329 6.01654 6.05634 6.52091 6.79194 7.27697 7.38803 8.81456 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.014474 B = 0.007315 C = 0.005436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.011066 B = 3826.656969 C = 5149.175316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.242 3.758 5 C -0.548 4.548 6 H 0.042 0.958 7 C 0.028 3.972 8 N -0.914 5.914 9 Si 0.946 3.054 10 H -0.271 1.271 11 H -0.276 1.276 12 H -0.279 1.279 13 C 0.524 3.476 14 O -0.583 6.583 15 C -0.074 4.074 16 H 0.090 0.910 17 C -0.129 4.129 18 C -0.115 4.115 19 C -0.066 4.066 20 C -0.129 4.129 21 C -0.086 4.086 22 C -0.160 4.160 23 C 0.067 3.933 24 F -0.156 7.156 25 H 0.046 0.954 26 H 0.054 0.946 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.026 0.974 31 H 0.046 0.954 32 H 0.269 0.731 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.127 0.873 37 H 0.160 0.840 38 H 0.171 0.829 39 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.972 3.080 13.113 14.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.016 4.016 3 N -0.329 5.329 4 C 0.121 3.879 5 C -0.586 4.586 6 H 0.060 0.940 7 C -0.173 4.173 8 N -0.553 5.553 9 Si 0.772 3.228 10 H -0.196 1.196 11 H -0.201 1.201 12 H -0.204 1.204 13 C 0.313 3.687 14 O -0.465 6.465 15 C -0.095 4.095 16 H 0.108 0.892 17 C -0.186 4.186 18 C -0.117 4.117 19 C -0.084 4.084 20 C -0.147 4.147 21 C -0.104 4.104 22 C -0.179 4.179 23 C 0.048 3.952 24 F -0.135 7.135 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.106 0.894 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.044 0.956 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.145 0.855 37 H 0.178 0.822 38 H 0.188 0.812 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -4.048 2.858 13.389 14.276 hybrid contribution 1.399 -0.200 -1.179 1.840 sum -2.649 2.658 12.209 12.773 Atomic orbital electron populations 1.22001 0.94270 1.03083 1.01450 1.21445 0.95504 0.82531 1.02117 1.48237 1.63180 1.14149 1.07289 1.19364 0.94673 0.93789 0.80030 1.21635 0.93899 1.36806 1.06286 0.93989 1.25526 1.01773 0.94476 0.95547 1.69973 1.36558 1.36953 1.11813 0.85724 0.80837 0.78165 0.78065 1.19611 1.20093 1.20380 1.20444 0.76157 0.89001 0.83128 1.90550 1.54556 1.69757 1.31662 1.20110 1.01833 0.92601 0.94963 0.89183 1.21775 0.95793 0.99296 1.01772 1.19638 0.93447 1.02510 0.96082 1.20958 0.99044 0.95984 0.92397 1.21566 0.97791 0.98947 0.96401 1.21415 0.92171 0.97048 0.99729 1.21382 1.02660 1.03490 0.90350 1.18070 0.86737 1.04056 0.86349 1.91459 1.66620 1.94379 1.61004 0.93495 0.92691 0.89432 0.90586 0.91716 0.95638 0.93650 0.92193 0.90539 0.91487 0.91138 0.85509 0.82245 0.81197 0.82994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.54 10.22 71.98 0.74 -3.81 16 2 C 0.11 3.98 6.09 86.38 0.53 4.51 16 3 N -0.60 -26.08 2.49 -826.15 -2.05 -28.14 16 4 C 0.24 11.77 4.83 85.63 0.41 12.18 16 5 C -0.55 -29.70 8.39 25.60 0.21 -29.49 16 6 H 0.04 2.38 7.81 -2.91 -0.02 2.36 16 7 C 0.03 1.50 5.46 84.66 0.46 1.96 16 8 N -0.91 -50.80 13.29 21.45 0.28 -50.51 16 9 Si 0.95 43.64 29.54 68.60 2.03 45.66 16 10 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 11 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 12 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 13 C 0.52 22.81 6.76 87.66 0.59 23.40 16 14 O -0.58 -26.38 14.36 -3.05 -0.04 -26.42 16 15 C -0.07 -2.99 2.07 -12.29 -0.03 -3.01 16 16 H 0.09 4.26 5.85 -2.39 -0.01 4.25 16 17 C -0.13 -4.43 8.65 71.98 0.62 -3.80 16 18 C -0.12 -4.18 4.51 -19.82 -0.09 -4.27 16 19 C -0.07 -1.99 7.91 22.26 0.18 -1.81 16 20 C -0.13 -2.94 10.04 22.27 0.22 -2.72 16 21 C -0.09 -1.79 10.04 22.26 0.22 -1.57 16 22 C -0.16 -4.24 10.03 22.31 0.22 -4.02 16 23 C 0.07 2.37 7.25 22.38 0.16 2.53 16 24 F -0.16 -6.35 16.19 44.97 0.73 -5.63 16 25 H 0.05 1.47 8.14 -2.39 -0.02 1.46 16 26 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.08 2.79 8.05 -2.39 -0.02 2.77 16 29 H 0.06 2.46 7.46 -2.39 -0.02 2.44 16 30 H 0.03 1.29 8.01 -2.39 -0.02 1.27 16 31 H 0.05 2.24 4.42 -2.39 -0.01 2.23 16 32 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 33 H 0.08 2.35 8.13 -2.39 -0.02 2.33 16 34 H 0.07 2.49 5.47 -2.39 -0.01 2.47 16 35 H 0.07 2.13 7.65 -2.38 -0.02 2.11 16 36 H 0.13 3.80 7.35 -2.91 -0.02 3.78 16 37 H 0.16 2.48 8.06 -2.91 -0.02 2.46 16 38 H 0.17 2.08 8.06 -2.91 -0.02 2.05 16 39 H 0.15 3.25 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -64.38 326.57 6.45 -57.93 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: 1.05 Total: 17.03 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: 4.46 Total: -9.92 kcal Atomic # 7 Polarization: -76.88 SS G_CDS: -1.77 Total: -78.65 kcal Atomic # 8 Polarization: -26.38 SS G_CDS: -0.04 Total: -26.42 kcal Atomic # 9 Polarization: -6.35 SS G_CDS: 0.73 Total: -5.63 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Total: -64.38 6.45 -57.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109023122.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.251 kcal (2) G-P(sol) polarization free energy of solvation -64.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds