Wall clock time and date at job start Tue Mar 31 2020 00:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 109.47031 * 2 1 4 4 C 1.37101 * 119.99955 * 263.55537 * 3 2 1 5 5 H 1.07994 * 120.00345 * 188.39371 * 4 3 2 6 6 C 1.38955 * 120.00153 * 8.39616 * 4 3 2 7 7 N 1.31420 * 119.99649 * 25.15834 * 6 4 3 8 8 Si 1.86796 * 120.00298 * 205.16465 * 6 4 3 9 9 H 1.48505 * 109.46846 * 84.98324 * 8 6 4 10 10 H 1.48498 * 109.47397 * 204.98374 * 8 6 4 11 11 H 1.48498 * 109.46939 * 324.98798 * 8 6 4 12 12 C 1.34775 * 120.00509 * 83.55982 * 3 2 1 13 13 O 1.21289 * 120.00420 * 179.97438 * 12 3 2 14 14 C 1.50706 * 119.99371 * 359.97438 * 12 3 2 15 15 C 1.53011 * 109.46644 * 179.97438 * 14 12 3 16 16 H 1.08993 * 109.46722 * 55.00262 * 15 14 12 17 17 C 1.52999 * 109.47024 * 294.99872 * 15 14 12 18 18 C 1.50702 * 109.46722 * 174.99915 * 15 14 12 19 19 C 1.38271 * 119.98390 * 59.72871 * 18 15 14 20 20 C 1.38228 * 120.04661 * 179.72476 * 19 18 15 21 21 C 1.38226 * 120.02364 * 0.54794 * 20 19 18 22 22 C 1.38434 * 119.97573 * 359.72438 * 21 20 19 23 23 F 1.35099 * 120.02857 * 180.02562 * 22 21 20 24 24 C 1.38169 * 119.98651 * 239.99942 * 18 15 14 25 25 H 1.08997 * 109.47305 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46958 * 300.00070 * 1 2 3 27 27 H 1.09001 * 109.47395 * 59.99462 * 1 2 3 28 28 H 1.09002 * 109.46958 * 239.99930 * 2 1 3 29 29 H 1.08995 * 109.47230 * 120.00099 * 2 1 3 30 30 H 0.96994 * 119.99662 * 180.02562 * 7 6 4 31 31 H 1.09000 * 109.47319 * 60.00555 * 14 12 3 32 32 H 1.08994 * 109.47082 * 299.99554 * 14 12 3 33 33 H 1.09001 * 109.46995 * 300.00255 * 17 15 14 34 34 H 1.09003 * 109.47068 * 60.00088 * 17 15 14 35 35 H 1.08998 * 109.46861 * 180.02562 * 17 15 14 36 36 H 1.07997 * 119.97406 * 359.97438 * 19 18 15 37 37 H 1.07991 * 119.98680 * 180.27624 * 20 19 18 38 38 H 1.07996 * 120.01028 * 179.70989 * 21 20 19 39 39 H 1.07996 * 120.01627 * 0.02775 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3725 1.9831 -1.1798 5 1 2.8580 2.9477 -1.1696 6 6 2.1067 1.3520 -2.3889 7 7 1.1281 0.4788 -2.4731 8 14 3.1402 1.7446 -3.8945 9 1 4.3644 0.9040 -3.8875 10 1 2.3536 1.4632 -5.1222 11 1 3.5246 3.1788 -3.8708 12 6 2.1196 2.0603 1.1598 13 8 2.5243 3.2036 1.1598 14 6 1.7298 1.3988 2.4566 15 6 1.9390 2.3795 3.6123 16 1 1.3904 3.2997 3.4116 17 6 3.4299 2.6943 3.7505 18 6 1.4350 1.7629 4.8917 19 6 1.9810 0.5780 5.3497 20 6 1.5237 0.0143 6.5260 21 6 0.5120 0.6288 7.2399 22 6 -0.0392 1.8122 6.7793 23 9 -1.0277 2.4139 7.4765 24 6 0.4237 2.3790 5.6036 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 0.9428 0.0380 -3.3170 31 1 2.3483 0.5152 2.6140 32 1 0.6810 1.1054 2.4139 33 1 3.9784 1.7740 3.9511 34 1 3.7944 3.1402 2.8250 35 1 3.5789 3.3926 4.5740 36 1 2.7681 0.0948 4.7900 37 1 1.9539 -0.9088 6.8851 38 1 0.1516 0.1857 8.1565 39 1 -0.0059 3.3019 5.2432 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000116006588.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:09 Heat of formation + Delta-G solvation = -56.653178 kcal Electronic energy + Delta-G solvation = -21749.210374 eV Core-core repulsion = 18378.363583 eV Total energy + Delta-G solvation = -3370.846791 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.90478 -39.59793 -38.45184 -35.48377 -34.27339 -31.84045 -30.75977 -29.65161 -29.29542 -27.48495 -24.72840 -23.43572 -22.77394 -22.15408 -20.40994 -18.54871 -17.25739 -16.79904 -16.39292 -16.13448 -15.90540 -15.60164 -14.76814 -14.52783 -14.06796 -14.03367 -13.56249 -13.26739 -12.98213 -12.84525 -12.67385 -12.20587 -12.13238 -11.90612 -11.70962 -11.55895 -11.17792 -11.10690 -10.88876 -10.66718 -10.51859 -10.44922 -10.30769 -10.09808 -9.79334 -8.96156 -8.88336 -8.65173 -8.26894 -7.74097 -6.35644 -3.76690 1.15454 1.20596 3.15792 3.26182 3.30593 3.57890 3.90135 4.11426 4.21202 4.62445 4.78298 4.91828 5.06828 5.07223 5.21396 5.32629 5.43541 5.54033 5.64411 5.90223 5.91530 6.02357 6.05243 6.08119 6.17449 6.21599 6.29731 6.38760 6.41414 6.60282 6.64241 6.75329 6.75798 6.86135 6.92545 7.26451 7.47491 7.73708 8.10883 8.52232 9.19996 9.46862 10.02336 10.65132 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.031150 B = 0.003953 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.659984 B = 7081.662134 C = 7364.608574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.121 3.879 3 N -0.442 5.442 4 C -0.307 4.307 5 H 0.104 0.896 6 C 0.030 3.970 7 N -0.866 5.866 8 Si 0.917 3.083 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.271 1.271 12 C 0.443 3.557 13 O -0.591 6.591 14 C -0.121 4.121 15 C -0.036 4.036 16 H 0.086 0.914 17 C -0.145 4.145 18 C -0.035 4.035 19 C -0.125 4.125 20 C -0.090 4.090 21 C -0.166 4.166 22 C 0.096 3.904 23 F -0.144 7.144 24 C -0.152 4.152 25 H 0.037 0.963 26 H 0.024 0.976 27 H 0.091 0.909 28 H 0.101 0.899 29 H 0.031 0.969 30 H 0.266 0.734 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.046 0.954 34 H 0.089 0.911 35 H 0.045 0.955 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.423 -4.092 14.009 14.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.003 4.003 3 N -0.160 5.160 4 C -0.435 4.435 5 H 0.122 0.878 6 C -0.173 4.173 7 N -0.506 5.506 8 Si 0.744 3.256 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.195 1.195 12 C 0.231 3.769 13 O -0.478 6.478 14 C -0.162 4.162 15 C -0.055 4.055 16 H 0.104 0.896 17 C -0.202 4.202 18 C -0.036 4.036 19 C -0.143 4.143 20 C -0.109 4.109 21 C -0.185 4.185 22 C 0.077 3.923 23 F -0.123 7.123 24 C -0.171 4.171 25 H 0.056 0.944 26 H 0.043 0.957 27 H 0.110 0.890 28 H 0.119 0.881 29 H 0.050 0.950 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.065 0.935 34 H 0.107 0.893 35 H 0.064 0.936 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.148 0.852 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.352 -3.641 13.852 14.326 hybrid contribution 0.007 -0.037 -0.610 0.611 sum -0.345 -3.678 13.241 13.747 Atomic orbital electron populations 1.22123 0.96757 0.99791 1.02014 1.21434 0.94459 0.83783 1.00647 1.43839 1.55318 1.11219 1.05608 1.19724 1.36018 1.05499 0.82220 0.87824 1.25178 0.95998 0.97224 0.98886 1.70117 1.24974 1.28884 1.26647 0.86079 0.79982 0.79162 0.80347 1.20428 1.21183 1.19528 1.19860 0.85138 0.86912 0.84958 1.90464 1.52071 1.18455 1.86766 1.21634 1.02449 0.98530 0.93540 1.19920 0.97935 0.98458 0.89141 0.89586 1.21933 0.93953 1.00850 1.03418 1.19992 0.93578 0.94046 0.95956 1.21148 1.00837 0.95808 0.96509 1.20982 0.95744 0.99531 0.94596 1.21066 0.99644 0.95698 1.02104 1.17708 0.88960 0.93459 0.92174 1.91481 1.59403 1.83067 1.78319 1.21126 0.99204 1.02011 0.94758 0.94424 0.95733 0.88998 0.88113 0.95048 0.92331 0.90602 0.90213 0.93537 0.89253 0.93565 0.85244 0.85210 0.85190 0.84763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 9.64 37.16 0.36 -2.70 16 2 C 0.12 2.62 5.07 -4.04 -0.02 2.60 16 3 N -0.44 -10.91 2.64 -114.81 -0.30 -11.22 16 4 C -0.31 -8.32 9.43 -14.93 -0.14 -8.46 16 5 H 0.10 2.99 7.31 -52.49 -0.38 2.60 16 6 C 0.03 0.76 4.90 -17.46 -0.09 0.68 16 7 N -0.87 -21.82 8.65 55.50 0.48 -21.34 16 8 Si 0.92 20.19 29.62 -169.99 -5.04 15.15 16 9 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 10 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 12 C 0.44 10.31 7.29 -10.98 -0.08 10.23 16 13 O -0.59 -15.46 13.56 5.55 0.08 -15.38 16 14 C -0.12 -2.15 3.52 -27.87 -0.10 -2.25 16 15 C -0.04 -0.57 2.21 -91.77 -0.20 -0.77 16 16 H 0.09 1.49 7.69 -51.93 -0.40 1.09 16 17 C -0.14 -2.27 8.75 37.16 0.33 -1.94 16 18 C -0.04 -0.48 4.78 -104.63 -0.50 -0.98 16 19 C -0.12 -1.49 8.76 -39.57 -0.35 -1.83 16 20 C -0.09 -0.94 10.04 -39.59 -0.40 -1.33 16 21 C -0.17 -1.82 10.03 -39.51 -0.40 -2.22 16 22 C 0.10 1.23 7.30 -39.42 -0.29 0.94 16 23 F -0.14 -1.90 17.27 2.25 0.04 -1.86 16 24 C -0.15 -2.03 9.65 -39.52 -0.38 -2.42 16 25 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.02 0.47 6.45 -51.93 -0.34 0.13 16 27 H 0.09 2.18 6.38 -51.93 -0.33 1.85 16 28 H 0.10 2.37 5.83 -51.93 -0.30 2.07 16 29 H 0.03 0.59 6.71 -51.93 -0.35 0.24 16 30 H 0.27 6.39 8.31 -40.82 -0.34 6.05 16 31 H 0.08 1.21 6.83 -51.93 -0.35 0.86 16 32 H 0.08 1.39 6.41 -51.93 -0.33 1.05 16 33 H 0.05 0.65 7.40 -51.93 -0.38 0.26 16 34 H 0.09 1.69 5.95 -51.93 -0.31 1.38 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.13 1.40 7.16 -52.49 -0.38 1.03 16 37 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 38 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 39 H 0.13 1.70 7.94 -52.49 -0.42 1.29 16 LS Contribution 317.20 15.07 4.78 4.78 Total: -1.00 -28.48 317.20 -7.32 -35.79 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -5.10 Total: 4.55 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: -2.25 Total: -10.47 kcal Atomic # 7 Polarization: -32.74 SS G_CDS: 0.18 Total: -32.56 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: 0.08 Total: -15.38 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.04 Total: -1.86 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.04 Total: 15.15 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.48 -7.32 -35.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116006588.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.859 kcal (2) G-P(sol) polarization free energy of solvation -28.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds