Wall clock time and date at job start Tue Mar 31 2020 00:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 109.47031 * 2 1 4 4 C 1.37101 * 119.99955 * 263.55537 * 3 2 1 5 5 H 1.07994 * 120.00345 * 188.39371 * 4 3 2 6 6 C 1.38955 * 120.00153 * 8.39616 * 4 3 2 7 7 N 1.31420 * 119.99649 * 25.15834 * 6 4 3 8 8 Si 1.86796 * 120.00298 * 205.16465 * 6 4 3 9 9 H 1.48505 * 109.46846 * 84.98324 * 8 6 4 10 10 H 1.48498 * 109.47397 * 204.98374 * 8 6 4 11 11 H 1.48498 * 109.46939 * 324.98798 * 8 6 4 12 12 C 1.34775 * 120.00509 * 83.55982 * 3 2 1 13 13 O 1.21289 * 120.00420 * 179.97438 * 12 3 2 14 14 C 1.50706 * 119.99371 * 359.97438 * 12 3 2 15 15 C 1.53011 * 109.46644 * 179.97438 * 14 12 3 16 16 H 1.08993 * 109.46722 * 55.00262 * 15 14 12 17 17 C 1.52999 * 109.47024 * 294.99872 * 15 14 12 18 18 C 1.50702 * 109.46722 * 174.99915 * 15 14 12 19 19 C 1.38271 * 119.98390 * 59.72871 * 18 15 14 20 20 C 1.38228 * 120.04661 * 179.72476 * 19 18 15 21 21 C 1.38226 * 120.02364 * 0.54794 * 20 19 18 22 22 C 1.38434 * 119.97573 * 359.72438 * 21 20 19 23 23 F 1.35099 * 120.02857 * 180.02562 * 22 21 20 24 24 C 1.38169 * 119.98651 * 239.99942 * 18 15 14 25 25 H 1.08997 * 109.47305 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46958 * 300.00070 * 1 2 3 27 27 H 1.09001 * 109.47395 * 59.99462 * 1 2 3 28 28 H 1.09002 * 109.46958 * 239.99930 * 2 1 3 29 29 H 1.08995 * 109.47230 * 120.00099 * 2 1 3 30 30 H 0.96994 * 119.99662 * 180.02562 * 7 6 4 31 31 H 1.09000 * 109.47319 * 60.00555 * 14 12 3 32 32 H 1.08994 * 109.47082 * 299.99554 * 14 12 3 33 33 H 1.09001 * 109.46995 * 300.00255 * 17 15 14 34 34 H 1.09003 * 109.47068 * 60.00088 * 17 15 14 35 35 H 1.08998 * 109.46861 * 180.02562 * 17 15 14 36 36 H 1.07997 * 119.97406 * 359.97438 * 19 18 15 37 37 H 1.07991 * 119.98680 * 180.27624 * 20 19 18 38 38 H 1.07996 * 120.01028 * 179.70989 * 21 20 19 39 39 H 1.07996 * 120.01627 * 0.02775 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3725 1.9831 -1.1798 5 1 2.8580 2.9477 -1.1696 6 6 2.1067 1.3520 -2.3889 7 7 1.1281 0.4788 -2.4731 8 14 3.1402 1.7446 -3.8945 9 1 4.3644 0.9040 -3.8875 10 1 2.3536 1.4632 -5.1222 11 1 3.5246 3.1788 -3.8708 12 6 2.1196 2.0603 1.1598 13 8 2.5243 3.2036 1.1598 14 6 1.7298 1.3988 2.4566 15 6 1.9390 2.3795 3.6123 16 1 1.3904 3.2997 3.4116 17 6 3.4299 2.6943 3.7505 18 6 1.4350 1.7629 4.8917 19 6 1.9810 0.5780 5.3497 20 6 1.5237 0.0143 6.5260 21 6 0.5120 0.6288 7.2399 22 6 -0.0392 1.8122 6.7793 23 9 -1.0277 2.4139 7.4765 24 6 0.4237 2.3790 5.6036 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 0.9428 0.0380 -3.3170 31 1 2.3483 0.5152 2.6140 32 1 0.6810 1.1054 2.4139 33 1 3.9784 1.7740 3.9511 34 1 3.7944 3.1402 2.8250 35 1 3.5789 3.3926 4.5740 36 1 2.7681 0.0948 4.7900 37 1 1.9539 -0.9088 6.8851 38 1 0.1516 0.1857 8.1565 39 1 -0.0059 3.3019 5.2432 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000116006588.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:09 Heat of formation + Delta-G solvation = -70.544945 kcal Electronic energy + Delta-G solvation = -21749.812766 eV Core-core repulsion = 18378.363583 eV Total energy + Delta-G solvation = -3371.449184 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.87726 -40.90923 -39.89988 -37.18849 -35.68772 -33.76592 -31.70447 -31.21139 -30.55629 -28.95479 -26.52429 -24.62059 -23.86915 -23.66999 -21.68891 -20.17323 -18.74948 -18.36491 -17.62128 -17.31176 -17.04344 -16.58184 -16.41053 -16.18513 -15.80898 -15.30563 -14.67287 -14.53304 -14.49899 -14.27585 -14.00612 -13.73586 -13.57166 -13.20688 -13.03414 -12.84555 -12.77391 -12.65735 -12.47513 -12.19056 -12.13077 -11.86079 -11.76349 -11.66853 -11.47385 -10.77909 -10.16206 -9.87994 -9.64572 -9.57318 -8.30063 -5.78889 0.22983 0.29926 1.38070 1.44446 1.54244 2.09496 2.30969 2.66310 3.07332 3.11654 3.32593 3.70723 3.81153 4.06607 4.15640 4.20244 4.28081 4.32940 4.40311 4.48556 4.61357 4.77295 4.78310 4.91727 4.93901 4.98639 5.09754 5.15207 5.17904 5.22171 5.24681 5.39973 5.46912 5.51255 5.58166 5.67636 5.93275 5.99516 6.14260 6.59545 7.25490 7.59050 8.15593 8.68241 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.031150 B = 0.003953 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.659984 B = 7081.662134 C = 7364.608574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.121 3.879 3 N -0.456 5.456 4 C -0.349 4.349 5 H 0.071 0.929 6 C 0.005 3.995 7 N -0.870 5.870 8 Si 0.976 3.024 9 H -0.269 1.269 10 H -0.275 1.275 11 H -0.281 1.281 12 C 0.431 3.569 13 O -0.631 6.631 14 C -0.107 4.107 15 C -0.029 4.029 16 H 0.059 0.941 17 C -0.139 4.139 18 C -0.047 4.047 19 C -0.125 4.125 20 C -0.080 4.080 21 C -0.158 4.158 22 C 0.079 3.921 23 F -0.151 7.151 24 C -0.166 4.166 25 H 0.065 0.935 26 H 0.033 0.967 27 H 0.056 0.944 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.272 0.728 31 H 0.102 0.898 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.050 0.950 35 H 0.057 0.943 36 H 0.145 0.855 37 H 0.167 0.833 38 H 0.155 0.845 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.244 -6.701 15.502 16.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.002 4.002 3 N -0.175 5.175 4 C -0.476 4.476 5 H 0.089 0.911 6 C -0.198 4.198 7 N -0.508 5.508 8 Si 0.801 3.199 9 H -0.195 1.195 10 H -0.200 1.200 11 H -0.206 1.206 12 C 0.222 3.778 13 O -0.519 6.519 14 C -0.147 4.147 15 C -0.048 4.048 16 H 0.078 0.922 17 C -0.196 4.196 18 C -0.047 4.047 19 C -0.143 4.143 20 C -0.098 4.098 21 C -0.177 4.177 22 C 0.060 3.940 23 F -0.130 7.130 24 C -0.185 4.185 25 H 0.083 0.917 26 H 0.052 0.948 27 H 0.075 0.925 28 H 0.099 0.901 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.120 0.880 32 H 0.105 0.895 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.162 0.838 37 H 0.184 0.816 38 H 0.173 0.827 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.195 -6.280 15.347 16.583 hybrid contribution -0.078 0.777 -1.045 1.304 sum -0.273 -5.503 14.302 15.327 Atomic orbital electron populations 1.21975 0.95927 1.01119 1.00672 1.21502 0.95093 0.82290 1.01306 1.44074 1.55648 1.12387 1.05349 1.19554 1.38346 1.05514 0.84228 0.91139 1.25789 0.96363 0.97005 1.00634 1.70198 1.24609 1.28556 1.27444 0.85212 0.78809 0.78332 0.77529 1.19490 1.20011 1.20633 1.20857 0.83878 0.86697 0.86386 1.90440 1.53430 1.20426 1.87616 1.21566 1.03051 0.99239 0.90816 1.19745 0.97830 0.97206 0.90009 0.92199 1.21837 0.94017 1.01923 1.01818 1.19698 0.94590 0.95265 0.95148 1.21369 1.00844 0.94911 0.97207 1.21364 0.94756 1.00264 0.93407 1.21426 0.99008 0.94531 1.02734 1.17898 0.89402 0.94432 0.92224 1.91462 1.59771 1.83378 1.78380 1.21141 0.99661 1.02209 0.95506 0.91654 0.94842 0.92501 0.90115 0.91559 0.91803 0.87974 0.89493 0.91343 0.93093 0.92366 0.83771 0.81587 0.82685 0.85502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.53 9.64 71.98 0.69 -4.84 16 2 C 0.12 5.13 5.07 86.38 0.44 5.57 16 3 N -0.46 -22.94 2.64 -635.54 -1.68 -24.62 16 4 C -0.35 -19.58 9.43 84.04 0.79 -18.79 16 5 H 0.07 4.33 7.31 -2.91 -0.02 4.31 16 6 C 0.00 0.25 4.90 84.93 0.42 0.67 16 7 N -0.87 -43.76 8.65 21.67 0.19 -43.57 16 8 Si 0.98 41.78 29.62 68.60 2.03 43.81 16 9 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 10 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 11 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 12 C 0.43 20.54 7.29 87.66 0.64 21.18 16 13 O -0.63 -34.69 13.56 -3.06 -0.04 -34.73 16 14 C -0.11 -3.69 3.52 29.85 0.11 -3.58 16 15 C -0.03 -0.92 2.21 -11.54 -0.03 -0.94 16 16 H 0.06 2.18 7.69 -2.39 -0.02 2.16 16 17 C -0.14 -4.32 8.75 71.98 0.63 -3.69 16 18 C -0.05 -1.20 4.78 -19.87 -0.09 -1.30 16 19 C -0.13 -2.53 8.76 22.28 0.20 -2.34 16 20 C -0.08 -1.29 10.04 22.26 0.22 -1.07 16 21 C -0.16 -2.89 10.03 22.31 0.22 -2.67 16 22 C 0.08 1.89 7.30 22.38 0.16 2.06 16 23 F -0.15 -3.84 17.27 44.97 0.78 -3.06 16 24 C -0.17 -4.33 9.65 22.31 0.22 -4.12 16 25 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 26 H 0.03 1.24 6.45 -2.39 -0.02 1.22 16 27 H 0.06 2.68 6.38 -2.39 -0.02 2.67 16 28 H 0.08 3.75 5.83 -2.39 -0.01 3.74 16 29 H 0.07 2.31 6.71 -2.39 -0.02 2.30 16 30 H 0.27 12.86 8.31 -92.71 -0.77 12.08 16 31 H 0.10 2.97 6.83 -2.39 -0.02 2.96 16 32 H 0.09 2.89 6.41 -2.39 -0.02 2.87 16 33 H 0.07 1.78 7.40 -2.39 -0.02 1.76 16 34 H 0.05 1.99 5.95 -2.39 -0.01 1.98 16 35 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.14 2.47 7.16 -2.91 -0.02 2.45 16 37 H 0.17 1.51 8.06 -2.92 -0.02 1.48 16 38 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 39 H 0.13 3.34 7.94 -2.91 -0.02 3.32 16 Total: -1.00 -64.52 317.20 6.95 -57.57 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: 1.06 Total: 18.44 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: 4.62 Total: -13.85 kcal Atomic # 7 Polarization: -66.70 SS G_CDS: -1.49 Total: -68.19 kcal Atomic # 8 Polarization: -34.69 SS G_CDS: -0.04 Total: -34.73 kcal Atomic # 9 Polarization: -3.84 SS G_CDS: 0.78 Total: -3.06 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -64.52 6.95 -57.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116006588.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.975 kcal (2) G-P(sol) polarization free energy of solvation -64.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds