Wall clock time and date at job start Tue Mar 31 2020 01:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34224 * 125.73912 * 2 1 4 4 C 1.38129 * 107.40896 * 180.28484 * 3 2 1 5 5 C 1.47284 * 126.43160 * 179.73503 * 4 3 2 6 6 O 1.21524 * 119.99610 * 0.02562 * 5 4 3 7 7 O 1.34747 * 120.00023 * 179.97438 * 5 4 3 8 8 C 1.45210 * 116.99930 * 180.02562 * 7 5 4 9 9 C 1.53039 * 109.45907 * 270.02971 * 8 7 5 10 10 C 1.53192 * 109.31512 * 178.59950 * 9 8 7 11 11 N 1.46927 * 108.75965 * 54.65223 * 10 9 8 12 12 C 1.36944 * 120.62370 * 126.41139 * 11 10 9 13 13 H 1.08000 * 120.00140 * 331.81984 * 12 11 10 14 14 C 1.38816 * 119.99444 * 151.82881 * 12 11 10 15 15 N 1.31614 * 120.00323 * 343.05994 * 14 12 11 16 16 Si 1.86802 * 119.99669 * 163.06799 * 14 12 11 17 17 H 1.48501 * 109.47162 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47350 * 119.99394 * 16 14 12 19 19 H 1.48501 * 109.47071 * 239.99494 * 16 14 12 20 20 C 1.46919 * 118.74406 * 306.38401 * 11 10 9 21 21 C 1.53039 * 109.46116 * 149.97601 * 8 7 5 22 22 C 1.41347 * 107.14104 * 359.58733 * 4 3 2 23 23 N 1.30432 * 108.01361 * 0.41761 * 22 4 3 24 24 H 1.08996 * 109.46751 * 90.00051 * 1 2 3 25 25 H 1.09004 * 109.46654 * 210.00046 * 1 2 3 26 26 H 1.08998 * 109.47037 * 330.00201 * 1 2 3 27 27 H 1.07996 * 126.30084 * 0.02562 * 3 2 1 28 28 H 1.08995 * 109.45660 * 30.00034 * 8 7 5 29 29 H 1.08997 * 109.49937 * 298.56658 * 9 8 7 30 30 H 1.09006 * 109.49602 * 58.65900 * 9 8 7 31 31 H 1.09008 * 109.59363 * 294.87113 * 10 9 8 32 32 H 1.08995 * 109.70621 * 174.50792 * 10 9 8 33 33 H 0.97006 * 120.00138 * 179.97438 * 15 14 12 34 34 H 1.08999 * 109.58936 * 293.82365 * 20 11 10 35 35 H 1.08997 * 109.70616 * 173.46570 * 20 11 10 36 36 H 1.09000 * 109.49281 * 301.33697 * 21 8 7 37 37 H 1.09000 * 109.49691 * 61.40052 * 21 8 7 38 38 H 1.08003 * 125.98931 * 180.16412 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2490 1.0895 0.0000 4 6 3.5602 0.6551 -0.0066 5 6 4.7632 1.5049 -0.0144 6 8 4.6521 2.7150 -0.0151 7 8 5.9867 0.9405 -0.0198 8 6 7.1272 1.8393 -0.0268 9 6 7.5199 2.1534 -1.4723 10 6 8.7009 3.1290 -1.4759 11 7 9.7866 2.5598 -0.6659 12 6 11.0468 2.4247 -1.1846 13 1 11.1817 2.2903 -2.2477 14 6 12.1508 2.4602 -0.3438 15 7 12.0354 2.9466 0.8738 16 14 13.8002 1.8177 -0.9405 17 1 13.6652 1.3276 -2.3358 18 1 14.8035 2.9116 -0.8946 19 1 14.2432 0.7028 -0.0653 20 6 9.4947 2.1390 0.7111 21 6 8.3046 1.1747 0.6902 22 6 3.5309 -0.7581 -0.0008 23 7 2.2825 -1.1356 -0.0005 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.9160 2.1168 0.0004 28 1 6.8641 2.7638 0.4870 29 1 7.8071 1.2324 -1.9796 30 1 6.6733 2.6052 -1.9893 31 1 8.3886 4.0826 -1.0500 32 1 9.0485 3.2815 -2.4976 33 1 12.8068 2.9710 1.4614 34 1 9.2472 3.0118 1.3153 35 1 10.3646 1.6366 1.1341 36 1 8.0166 0.9299 1.7126 37 1 8.5839 0.2627 0.1627 38 1 4.3915 -1.4107 -0.0012 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119356247.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:21:11 Heat of formation + Delta-G solvation = 12.534378 kcal Electronic energy + Delta-G solvation = -21451.521757 eV Core-core repulsion = 18103.595125 eV Total energy + Delta-G solvation = -3347.926632 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.58343 -39.83482 -37.31185 -35.63688 -33.76849 -32.62957 -30.72934 -30.26334 -29.57302 -27.60250 -25.23255 -23.54869 -22.21252 -21.82777 -21.24284 -20.16096 -19.26227 -18.02734 -16.94365 -16.56368 -16.04799 -15.64365 -15.31052 -14.79479 -14.66703 -13.99251 -13.54138 -13.49863 -13.21989 -13.11666 -12.99185 -12.85793 -12.63428 -12.39401 -11.48472 -11.32822 -11.17686 -11.00275 -10.73743 -10.65787 -10.37757 -10.17451 -10.11672 -9.88664 -9.85753 -9.61156 -9.38846 -8.99205 -8.47525 -6.70091 -5.79628 -3.22105 1.21322 1.94494 2.00195 3.07483 3.28073 3.38562 3.46353 3.48837 4.17842 4.45513 4.50095 4.67878 4.77358 4.95140 4.97084 5.20618 5.32102 5.39064 5.46483 5.50759 5.61078 5.81330 6.06276 6.17573 6.28372 6.45021 6.46755 6.48237 6.56628 6.64283 6.77133 6.92653 7.02990 7.25166 7.32430 7.61750 7.80370 8.13316 8.44260 9.20224 9.83081 10.39877 11.29573 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.048700 B = 0.003231 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.815862 B = 8665.042744 C = 8811.380291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.366 5.366 3 C 0.132 3.868 4 C -0.275 4.275 5 C 0.540 3.460 6 O -0.523 6.523 7 O -0.352 6.352 8 C 0.101 3.899 9 C -0.146 4.146 10 C 0.149 3.851 11 N -0.593 5.593 12 C -0.252 4.252 13 H 0.067 0.933 14 C 0.002 3.998 15 N -0.903 5.903 16 Si 0.903 3.097 17 H -0.277 1.277 18 H -0.290 1.290 19 H -0.288 1.288 20 C 0.174 3.826 21 C -0.135 4.135 22 C 0.105 3.895 23 N -0.303 5.303 24 H 0.080 0.920 25 H 0.094 0.906 26 H 0.092 0.908 27 H 0.191 0.809 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.021 0.979 32 H 0.060 0.940 33 H 0.254 0.746 34 H 0.022 0.978 35 H 0.096 0.904 36 H 0.058 0.942 37 H 0.067 0.933 38 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.695 -5.675 -0.624 22.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.144 5.144 3 C -0.020 4.020 4 C -0.288 4.288 5 C 0.384 3.616 6 O -0.414 6.414 7 O -0.269 6.269 8 C 0.047 3.953 9 C -0.185 4.185 10 C 0.022 3.978 11 N -0.316 5.316 12 C -0.382 4.382 13 H 0.085 0.915 14 C -0.197 4.197 15 N -0.548 5.548 16 Si 0.733 3.267 17 H -0.202 1.202 18 H -0.217 1.217 19 H -0.215 1.215 20 C 0.048 3.952 21 C -0.175 4.175 22 C -0.083 4.083 23 N -0.123 5.123 24 H 0.099 0.901 25 H 0.113 0.887 26 H 0.111 0.889 27 H 0.208 0.792 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.039 0.961 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.040 0.960 35 H 0.114 0.886 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -22.512 -6.302 -0.515 23.383 hybrid contribution 1.336 0.549 -0.224 1.462 sum -21.176 -5.753 -0.739 21.956 Atomic orbital electron populations 1.22009 0.73275 1.05078 1.04008 1.48439 1.07359 1.03905 1.54676 1.22962 0.89884 0.93906 0.95236 1.19488 0.91317 0.93570 1.24472 1.19902 0.83379 0.85948 0.72322 1.90813 1.87579 1.15357 1.47613 1.86586 1.14534 1.42385 1.83355 1.22925 0.81901 0.92436 0.98047 1.22460 0.99496 1.01611 0.94969 1.20864 0.87771 0.93013 0.96131 1.44132 1.05937 1.70460 1.11053 1.19242 0.82253 1.43668 0.93027 0.91488 1.25067 0.97825 0.99764 0.97008 1.70029 1.29796 1.46900 1.08051 0.86210 0.83903 0.78354 0.78227 1.20219 1.21730 1.21514 1.20803 0.94063 0.94101 0.86234 1.22454 0.94919 1.01338 0.98742 1.24288 0.95152 0.93947 0.94898 1.77242 1.02003 1.07501 1.25562 0.90101 0.88741 0.88940 0.79194 0.90320 0.91371 0.92652 0.96060 0.92143 0.93597 0.96011 0.88597 0.92368 0.91443 0.78380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.41 11.44 59.85 0.68 1.09 16 2 N -0.37 -3.38 3.98 -67.58 -0.27 -3.65 16 3 C 0.13 1.33 11.30 -16.55 -0.19 1.15 16 4 C -0.28 -3.60 6.13 -105.08 -0.64 -4.24 16 5 C 0.54 8.79 7.93 34.41 0.27 9.06 16 6 O -0.52 -9.68 16.16 -19.28 -0.31 -9.99 16 7 O -0.35 -6.07 9.73 -40.62 -0.40 -6.46 16 8 C 0.10 1.91 2.42 -26.69 -0.06 1.85 16 9 C -0.15 -2.79 5.72 -26.61 -0.15 -2.94 16 10 C 0.15 3.24 6.52 -3.71 -0.02 3.22 16 11 N -0.59 -15.06 2.99 -172.32 -0.52 -15.57 16 12 C -0.25 -6.94 9.58 -15.05 -0.14 -7.09 16 13 H 0.07 1.81 7.89 -52.49 -0.41 1.40 16 14 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 15 N -0.90 -26.16 11.19 55.49 0.62 -25.54 16 16 Si 0.90 21.65 29.59 -169.99 -5.03 16.62 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 C 0.17 4.18 5.30 -3.71 -0.02 4.16 16 21 C -0.14 -2.68 5.74 -26.61 -0.15 -2.83 16 22 C 0.10 1.25 11.87 -16.96 -0.20 1.05 16 23 N -0.30 -3.55 12.50 30.87 0.39 -3.17 16 24 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 25 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.09 0.17 8.14 -51.93 -0.42 -0.26 16 27 H 0.19 1.40 8.06 -52.49 -0.42 0.98 16 28 H 0.08 1.59 7.16 -51.93 -0.37 1.22 16 29 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.02 0.47 8.14 -51.92 -0.42 0.05 16 32 H 0.06 1.27 7.93 -51.93 -0.41 0.86 16 33 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 34 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.10 2.54 6.07 -51.93 -0.31 2.22 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.20 1.98 8.06 -52.48 -0.42 1.56 16 LS Contribution 323.05 15.07 4.87 4.87 Total: -1.00 -33.39 323.05 -6.66 -40.05 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -5.30 Total: -1.60 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: -0.72 Total: 4.44 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: 0.22 Total: -47.93 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -0.71 Total: -16.45 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.39 -6.66 -40.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119356247.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.587 kcal (2) G-P(sol) polarization free energy of solvation -33.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds