Wall clock time and date at job start Tue Mar 31 2020 01:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34224 * 125.73912 * 2 1 4 4 C 1.38129 * 107.40896 * 180.28484 * 3 2 1 5 5 C 1.47284 * 126.43160 * 179.73503 * 4 3 2 6 6 O 1.21524 * 119.99610 * 0.02562 * 5 4 3 7 7 O 1.34747 * 120.00023 * 179.97438 * 5 4 3 8 8 C 1.45210 * 116.99930 * 180.02562 * 7 5 4 9 9 C 1.53039 * 109.45907 * 270.02971 * 8 7 5 10 10 C 1.53192 * 109.31512 * 178.59950 * 9 8 7 11 11 N 1.46927 * 108.75965 * 54.65223 * 10 9 8 12 12 C 1.36944 * 120.62370 * 126.41139 * 11 10 9 13 13 H 1.08000 * 120.00140 * 331.81984 * 12 11 10 14 14 C 1.38816 * 119.99444 * 151.82881 * 12 11 10 15 15 N 1.31614 * 120.00323 * 343.05994 * 14 12 11 16 16 Si 1.86802 * 119.99669 * 163.06799 * 14 12 11 17 17 H 1.48501 * 109.47162 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47350 * 119.99394 * 16 14 12 19 19 H 1.48501 * 109.47071 * 239.99494 * 16 14 12 20 20 C 1.46919 * 118.74406 * 306.38401 * 11 10 9 21 21 C 1.53039 * 109.46116 * 149.97601 * 8 7 5 22 22 C 1.41347 * 107.14104 * 359.58733 * 4 3 2 23 23 N 1.30432 * 108.01361 * 0.41761 * 22 4 3 24 24 H 1.08996 * 109.46751 * 90.00051 * 1 2 3 25 25 H 1.09004 * 109.46654 * 210.00046 * 1 2 3 26 26 H 1.08998 * 109.47037 * 330.00201 * 1 2 3 27 27 H 1.07996 * 126.30084 * 0.02562 * 3 2 1 28 28 H 1.08995 * 109.45660 * 30.00034 * 8 7 5 29 29 H 1.08997 * 109.49937 * 298.56658 * 9 8 7 30 30 H 1.09006 * 109.49602 * 58.65900 * 9 8 7 31 31 H 1.09008 * 109.59363 * 294.87113 * 10 9 8 32 32 H 1.08995 * 109.70621 * 174.50792 * 10 9 8 33 33 H 0.97006 * 120.00138 * 179.97438 * 15 14 12 34 34 H 1.08999 * 109.58936 * 293.82365 * 20 11 10 35 35 H 1.08997 * 109.70616 * 173.46570 * 20 11 10 36 36 H 1.09000 * 109.49281 * 301.33697 * 21 8 7 37 37 H 1.09000 * 109.49691 * 61.40052 * 21 8 7 38 38 H 1.08003 * 125.98931 * 180.16412 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2490 1.0895 0.0000 4 6 3.5602 0.6551 -0.0066 5 6 4.7632 1.5049 -0.0144 6 8 4.6521 2.7150 -0.0151 7 8 5.9867 0.9405 -0.0198 8 6 7.1272 1.8393 -0.0268 9 6 7.5199 2.1534 -1.4723 10 6 8.7009 3.1290 -1.4759 11 7 9.7866 2.5598 -0.6659 12 6 11.0468 2.4247 -1.1846 13 1 11.1817 2.2903 -2.2477 14 6 12.1508 2.4602 -0.3438 15 7 12.0354 2.9466 0.8738 16 14 13.8002 1.8177 -0.9405 17 1 13.6652 1.3276 -2.3358 18 1 14.8035 2.9116 -0.8946 19 1 14.2432 0.7028 -0.0653 20 6 9.4947 2.1390 0.7111 21 6 8.3046 1.1747 0.6902 22 6 3.5309 -0.7581 -0.0008 23 7 2.2825 -1.1356 -0.0005 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.9160 2.1168 0.0004 28 1 6.8641 2.7638 0.4870 29 1 7.8071 1.2324 -1.9796 30 1 6.6733 2.6052 -1.9893 31 1 8.3886 4.0826 -1.0500 32 1 9.0485 3.2815 -2.4976 33 1 12.8068 2.9710 1.4614 34 1 9.2472 3.0118 1.3153 35 1 10.3646 1.6366 1.1341 36 1 8.0166 0.9299 1.7126 37 1 8.5839 0.2627 0.1627 38 1 4.3915 -1.4107 -0.0012 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119356247.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:21:10 Heat of formation + Delta-G solvation = -7.897914 kcal Electronic energy + Delta-G solvation = -21452.407768 eV Core-core repulsion = 18103.595125 eV Total energy + Delta-G solvation = -3348.812643 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.44153 -41.16346 -38.96903 -37.14856 -34.65750 -34.32489 -32.17488 -31.62548 -31.28393 -28.30756 -27.03522 -24.84853 -23.91765 -23.35671 -22.08528 -21.27364 -20.97839 -19.10805 -18.78727 -17.87455 -17.09437 -16.84379 -16.61245 -16.29224 -15.70211 -15.39044 -15.38745 -14.93283 -14.60900 -14.40668 -14.24463 -13.86706 -13.55647 -13.46020 -13.25240 -13.05513 -12.63960 -12.60885 -12.42620 -12.29497 -12.08708 -11.92905 -11.81450 -11.46548 -11.32257 -11.02078 -10.64902 -10.55577 -9.86717 -8.74340 -7.89061 -5.35031 0.31773 1.00386 1.30933 1.48674 1.50675 1.61495 1.86391 2.17229 2.51954 3.27400 3.48193 3.61143 3.75038 3.83227 3.89472 3.94513 4.12998 4.20739 4.39353 4.43617 4.52874 4.56090 4.59613 4.71911 4.77054 4.89053 4.94899 5.01968 5.07477 5.24728 5.33354 5.42445 5.55086 5.64735 5.71860 5.79326 6.37838 6.42306 6.85110 7.12627 7.81118 8.34331 9.18841 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.048700 B = 0.003231 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.815862 B = 8665.042744 C = 8811.380291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.357 5.357 3 C 0.150 3.850 4 C -0.309 4.309 5 C 0.540 3.460 6 O -0.551 6.551 7 O -0.350 6.350 8 C 0.108 3.892 9 C -0.132 4.132 10 C 0.147 3.853 11 N -0.611 5.611 12 C -0.265 4.265 13 H 0.070 0.930 14 C -0.049 4.049 15 N -0.935 5.935 16 Si 0.970 3.030 17 H -0.266 1.266 18 H -0.292 1.292 19 H -0.288 1.288 20 C 0.181 3.819 21 C -0.121 4.121 22 C 0.103 3.897 23 N -0.324 5.324 24 H 0.097 0.903 25 H 0.100 0.900 26 H 0.122 0.878 27 H 0.219 0.781 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.015 0.985 32 H 0.066 0.934 33 H 0.252 0.748 34 H 0.001 0.999 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.700 -6.537 -1.360 24.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.134 5.134 3 C -0.004 4.004 4 C -0.322 4.322 5 C 0.387 3.613 6 O -0.443 6.443 7 O -0.266 6.266 8 C 0.054 3.946 9 C -0.172 4.172 10 C 0.021 3.979 11 N -0.334 5.334 12 C -0.394 4.394 13 H 0.087 0.913 14 C -0.245 4.245 15 N -0.581 5.581 16 Si 0.798 3.202 17 H -0.191 1.191 18 H -0.220 1.220 19 H -0.215 1.215 20 C 0.055 3.945 21 C -0.160 4.160 22 C -0.085 4.085 23 N -0.144 5.144 24 H 0.115 0.885 25 H 0.119 0.881 26 H 0.141 0.859 27 H 0.236 0.764 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.033 0.967 32 H 0.084 0.916 33 H 0.061 0.939 34 H 0.019 0.981 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -24.574 -7.196 -1.268 25.637 hybrid contribution 1.770 0.844 0.003 1.961 sum -22.803 -6.352 -1.265 23.705 Atomic orbital electron populations 1.22487 0.70284 1.06953 1.05683 1.48871 1.08918 1.02977 1.52605 1.23369 0.88964 0.95197 0.92834 1.19436 0.91076 0.93793 1.27930 1.20397 0.83503 0.86054 0.71334 1.90795 1.87707 1.16540 1.49301 1.86576 1.14684 1.41636 1.83704 1.22596 0.82419 0.92038 0.97583 1.22270 0.98645 1.00954 0.95290 1.20958 0.87828 0.93328 0.95779 1.44388 1.06259 1.71151 1.11635 1.19564 0.83387 1.43183 0.93315 0.91273 1.25838 1.01168 1.00227 0.97239 1.70177 1.30560 1.48208 1.09184 0.85173 0.79522 0.77386 0.78127 1.19051 1.21953 1.21471 1.20579 0.94625 0.93833 0.85472 1.22176 0.93695 0.99978 1.00186 1.24467 0.95737 0.93703 0.94561 1.77208 1.02124 1.08876 1.26145 0.88471 0.88118 0.85929 0.76438 0.91659 0.91109 0.91230 0.96736 0.91565 0.93913 0.98121 0.91350 0.90500 0.91272 0.77486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.41 11.44 127.77 1.46 1.88 16 2 N -0.36 -5.58 3.98 -367.73 -1.46 -7.04 16 3 C 0.15 2.64 11.30 84.30 0.95 3.60 16 4 C -0.31 -7.60 6.13 -20.16 -0.12 -7.73 16 5 C 0.54 17.07 7.93 70.20 0.56 17.63 16 6 O -0.55 -19.97 16.16 19.76 0.32 -19.65 16 7 O -0.35 -11.72 9.73 -56.57 -0.55 -12.27 16 8 C 0.11 4.06 2.42 30.62 0.07 4.13 16 9 C -0.13 -4.95 5.72 30.67 0.18 -4.77 16 10 C 0.15 6.40 6.52 86.36 0.56 6.96 16 11 N -0.61 -31.42 2.99 -699.10 -2.09 -33.51 16 12 C -0.26 -14.66 9.58 84.03 0.81 -13.86 16 13 H 0.07 3.72 7.89 -2.91 -0.02 3.70 16 14 C -0.05 -2.76 4.92 84.86 0.42 -2.34 16 15 N -0.94 -55.41 11.19 21.65 0.24 -55.17 16 16 Si 0.97 44.83 29.59 68.60 2.03 46.86 16 17 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 18 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 19 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 20 C 0.18 8.90 5.30 86.36 0.46 9.35 16 21 C -0.12 -4.78 5.74 30.67 0.18 -4.60 16 22 C 0.10 2.30 11.87 85.67 1.02 3.32 16 23 N -0.32 -6.96 12.50 -56.24 -0.70 -7.67 16 24 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 25 H 0.10 0.42 8.14 -2.38 -0.02 0.41 16 26 H 0.12 -0.09 8.14 -2.39 -0.02 -0.11 16 27 H 0.22 2.47 8.06 -2.91 -0.02 2.44 16 28 H 0.07 2.65 7.16 -2.39 -0.02 2.63 16 29 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 30 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 31 H 0.01 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.07 2.76 7.93 -2.39 -0.02 2.74 16 33 H 0.25 14.35 8.31 -92.70 -0.77 13.58 16 34 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 35 H 0.07 3.73 6.07 -2.39 -0.01 3.72 16 36 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 37 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 38 H 0.21 3.94 8.06 -2.91 -0.02 3.92 16 Total: -1.00 -72.30 323.05 5.37 -66.93 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: 1.05 Total: 7.95 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: 6.53 Total: 13.56 kcal Atomic # 7 Polarization: -99.37 SS G_CDS: -4.02 Total: -103.39 kcal Atomic # 8 Polarization: -31.69 SS G_CDS: -0.23 Total: -31.92 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -72.30 5.37 -66.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119356247.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.033 kcal (2) G-P(sol) polarization free energy of solvation -72.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds