Wall clock time and date at job start Tue Mar 31 2020 00:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.47343 * 2 1 4 4 C 1.37097 * 120.00054 * 263.95257 * 3 2 1 5 5 H 1.08002 * 120.00290 * 192.55117 * 4 3 2 6 6 C 1.38956 * 120.00038 * 12.54053 * 4 3 2 7 7 N 1.31412 * 119.99483 * 15.19993 * 6 4 3 8 8 Si 1.86803 * 120.00091 * 195.19561 * 6 4 3 9 9 H 1.48504 * 109.46887 * 60.00470 * 8 6 4 10 10 H 1.48497 * 109.46853 * 180.02562 * 8 6 4 11 11 H 1.48494 * 109.47042 * 300.00573 * 8 6 4 12 12 C 1.34779 * 120.00039 * 83.94268 * 3 2 1 13 13 O 1.21294 * 119.99770 * 5.54005 * 12 3 2 14 14 C 1.50701 * 119.99849 * 185.53363 * 12 3 2 15 15 C 1.52999 * 109.46822 * 175.87409 * 14 12 3 16 16 C 1.52992 * 109.47099 * 55.87179 * 14 12 3 17 17 C 1.50702 * 109.47229 * 295.86819 * 14 12 3 18 18 C 1.38271 * 119.98648 * 348.40838 * 17 14 12 19 19 C 1.38222 * 120.04756 * 179.97438 * 18 17 14 20 20 C 1.38218 * 120.02851 * 0.04311 * 19 18 17 21 21 C 1.38436 * 119.97232 * 359.97438 * 20 19 18 22 22 F 1.35103 * 120.02275 * 180.02562 * 21 20 19 23 23 C 1.38172 * 119.98380 * 168.44298 * 17 14 12 24 24 H 1.09003 * 109.46662 * 297.15602 * 1 2 3 25 25 H 1.08997 * 109.46920 * 57.14682 * 1 2 3 26 26 H 1.08992 * 109.47260 * 177.15650 * 1 2 3 27 27 H 1.08997 * 109.46799 * 240.00156 * 2 1 3 28 28 H 1.08998 * 109.47084 * 119.99653 * 2 1 3 29 29 H 0.96999 * 119.99266 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.47206 * 184.58754 * 15 14 12 31 31 H 1.09003 * 109.47186 * 304.58506 * 15 14 12 32 32 H 1.08995 * 109.47566 * 64.58684 * 15 14 12 33 33 H 1.08992 * 109.47435 * 304.27687 * 16 14 12 34 34 H 1.09002 * 109.47522 * 64.28195 * 16 14 12 35 35 H 1.09007 * 109.46984 * 184.27728 * 16 14 12 36 36 H 1.07994 * 119.97328 * 0.03759 * 18 17 14 37 37 H 1.08004 * 119.98371 * 180.02562 * 19 18 17 38 38 H 1.07999 * 120.01617 * 179.97438 * 20 19 18 39 39 H 1.07994 * 120.01857 * 0.26425 * 23 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3648 1.9858 -1.1807 5 1 2.9101 2.9180 -1.1704 6 6 2.0147 1.3991 -2.3906 7 7 1.1112 0.4453 -2.4211 8 14 2.8280 1.9662 -3.9738 9 1 4.2944 1.7506 -3.8816 10 1 2.2837 1.1889 -5.1159 11 1 2.5522 3.4104 -4.1821 12 6 2.1269 2.0576 1.1607 13 8 1.9170 1.4931 2.2135 14 6 2.5093 3.5153 1.1504 15 6 2.4615 4.0651 2.5774 16 6 1.5288 4.2935 0.2708 17 6 3.9046 3.6648 0.6011 18 6 4.7027 2.5489 0.4286 19 6 5.9825 2.6844 -0.0756 20 6 6.4663 3.9360 -0.4072 21 6 5.6682 5.0540 -0.2347 22 9 6.1399 6.2778 -0.5590 23 6 4.3862 4.9170 0.2706 24 1 -0.3633 0.4691 0.9144 25 1 -0.3633 0.5575 -0.8633 26 1 -0.3633 -1.0263 -0.0510 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.8665 0.0360 -3.2658 30 1 2.6582 5.1371 2.5605 31 1 1.4749 3.8835 3.0039 32 1 3.2171 3.5666 3.1844 33 1 1.5067 3.8533 -0.7260 34 1 0.5321 4.2486 0.7100 35 1 1.8489 5.3332 0.2019 36 1 4.3254 1.5706 0.6871 37 1 6.6048 1.8121 -0.2103 38 1 7.4664 4.0418 -0.8008 39 1 3.7644 5.7890 0.4099 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119438964.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:52 Heat of formation + Delta-G solvation = -52.507194 kcal Electronic energy + Delta-G solvation = -23262.447940 eV Core-core repulsion = 19891.780932 eV Total energy + Delta-G solvation = -3370.667008 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.81133 -41.68917 -39.39902 -37.07818 -35.93392 -33.37614 -31.85949 -31.14496 -30.72359 -28.01563 -26.78169 -25.34055 -23.85764 -23.30686 -22.00635 -20.54072 -19.01981 -18.39794 -17.30237 -17.03456 -16.96819 -16.49981 -16.16701 -15.99468 -15.75979 -15.10217 -14.80033 -14.66010 -14.25694 -14.17034 -13.97716 -13.46476 -13.17680 -13.04070 -12.97347 -12.90541 -12.80125 -12.67136 -12.51660 -12.43904 -12.25560 -12.04337 -11.76506 -11.64905 -11.50735 -10.73329 -10.17635 -9.80768 -9.62440 -9.43575 -8.17011 -5.75682 0.29251 0.34316 1.42477 1.49936 1.55626 2.03179 2.31851 2.70971 2.97858 3.17950 3.34663 3.73814 3.85049 4.14458 4.19341 4.29387 4.32871 4.36642 4.51307 4.61388 4.80881 4.85803 4.91503 4.94034 4.97589 5.01643 5.10938 5.14290 5.18360 5.21765 5.31664 5.45273 5.49029 5.53468 5.58724 5.70173 5.84680 5.92018 6.02389 6.57865 7.20938 7.67535 8.07734 8.78674 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.015045 B = 0.009155 C = 0.006786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.695521 B = 3057.667838 C = 4124.916206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.133 3.867 3 N -0.441 5.441 4 C -0.328 4.328 5 H 0.117 0.883 6 C -0.001 4.001 7 N -0.881 5.881 8 Si 0.964 3.036 9 H -0.270 1.270 10 H -0.285 1.285 11 H -0.269 1.269 12 C 0.452 3.548 13 O -0.642 6.642 14 C -0.027 4.027 15 C -0.111 4.111 16 C -0.147 4.147 17 C -0.033 4.033 18 C -0.114 4.114 19 C -0.092 4.092 20 C -0.156 4.156 21 C 0.083 3.917 22 F -0.144 7.144 23 C -0.151 4.151 24 H 0.010 0.990 25 H 0.069 0.931 26 H 0.051 0.949 27 H 0.094 0.906 28 H 0.023 0.977 29 H 0.267 0.733 30 H 0.084 0.916 31 H 0.051 0.949 32 H 0.045 0.955 33 H 0.078 0.922 34 H 0.048 0.952 35 H 0.082 0.918 36 H 0.102 0.898 37 H 0.149 0.851 38 H 0.157 0.843 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.799 7.033 0.380 9.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.009 3.991 3 N -0.157 5.157 4 C -0.455 4.455 5 H 0.135 0.865 6 C -0.203 4.203 7 N -0.520 5.520 8 Si 0.789 3.211 9 H -0.195 1.195 10 H -0.211 1.211 11 H -0.194 1.194 12 C 0.242 3.758 13 O -0.531 6.531 14 C -0.030 4.030 15 C -0.169 4.169 16 C -0.204 4.204 17 C -0.034 4.034 18 C -0.133 4.133 19 C -0.110 4.110 20 C -0.174 4.174 21 C 0.064 3.936 22 F -0.123 7.123 23 C -0.169 4.169 24 H 0.029 0.971 25 H 0.088 0.912 26 H 0.070 0.930 27 H 0.112 0.888 28 H 0.041 0.959 29 H 0.078 0.922 30 H 0.103 0.897 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.067 0.933 35 H 0.101 0.899 36 H 0.121 0.879 37 H 0.167 0.833 38 H 0.175 0.825 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 6.605 6.644 0.681 9.394 hybrid contribution -0.023 -0.137 -0.837 0.848 sum 6.583 6.508 -0.156 9.258 Atomic orbital electron populations 1.21777 0.96247 1.00466 0.99415 1.21210 0.94840 0.83690 0.99316 1.43963 1.54709 1.11187 1.05829 1.20109 1.34139 1.08833 0.82468 0.86533 1.25840 0.95940 0.97079 1.01421 1.70195 1.28221 1.26397 1.27205 0.85395 0.78981 0.78558 0.78137 1.19510 1.21075 1.19373 1.20401 0.82938 0.89163 0.83294 1.90489 1.59287 1.71047 1.32311 1.19535 0.92798 0.92778 0.97849 1.21564 1.01836 1.00780 0.92707 1.22106 0.97164 0.99957 1.01183 1.19347 0.94243 0.92853 0.96908 1.21200 0.94682 0.98126 0.99289 1.21141 0.94982 0.97762 0.97086 1.21303 1.01506 0.91155 1.03483 1.17684 0.93667 0.80247 1.01984 1.91464 1.88638 1.41481 1.90719 1.20973 0.95039 0.98298 1.02618 0.97065 0.91194 0.92982 0.88823 0.95884 0.92237 0.89731 0.92948 0.93532 0.90334 0.93267 0.89938 0.87945 0.83319 0.82516 0.83163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.59 9.59 71.98 0.69 -4.90 16 2 C 0.13 6.43 5.29 86.38 0.46 6.89 16 3 N -0.44 -21.15 2.13 -635.53 -1.35 -22.50 16 4 C -0.33 -15.22 5.90 84.04 0.50 -14.72 16 5 H 0.12 5.18 3.89 -2.91 -0.01 5.17 16 6 C 0.00 -0.04 5.10 84.93 0.43 0.39 16 7 N -0.88 -42.51 8.18 21.66 0.18 -42.33 16 8 Si 0.96 37.93 29.58 68.60 2.03 39.96 16 9 H -0.27 -10.48 7.11 99.48 0.71 -9.78 16 10 H -0.29 -11.25 7.11 99.48 0.71 -10.54 16 11 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 12 C 0.45 21.26 4.82 87.66 0.42 21.68 16 13 O -0.64 -33.99 15.62 -3.07 -0.05 -34.04 16 14 C -0.03 -1.01 0.60 -53.68 -0.03 -1.04 16 15 C -0.11 -3.75 7.66 71.98 0.55 -3.20 16 16 C -0.15 -5.16 7.93 71.98 0.57 -4.59 16 17 C -0.03 -1.16 2.94 -19.87 -0.06 -1.21 16 18 C -0.11 -4.18 7.46 22.27 0.17 -4.01 16 19 C -0.09 -2.73 10.04 22.26 0.22 -2.51 16 20 C -0.16 -4.19 10.03 22.31 0.22 -3.96 16 21 C 0.08 2.40 7.30 22.38 0.16 2.57 16 22 F -0.14 -4.02 17.27 44.97 0.78 -3.25 16 23 C -0.15 -4.55 8.97 22.31 0.20 -4.35 16 24 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 25 H 0.07 3.44 6.39 -2.39 -0.02 3.43 16 26 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.09 4.68 5.81 -2.39 -0.01 4.67 16 28 H 0.02 1.13 7.54 -2.39 -0.02 1.12 16 29 H 0.27 12.43 8.31 -92.71 -0.77 11.66 16 30 H 0.08 2.23 8.11 -2.39 -0.02 2.21 16 31 H 0.05 1.84 8.03 -2.39 -0.02 1.82 16 32 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.08 3.15 4.88 -2.39 -0.01 3.14 16 34 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.08 2.30 6.67 -2.38 -0.02 2.29 16 36 H 0.10 4.35 6.15 -2.91 -0.02 4.33 16 37 H 0.15 3.67 8.06 -2.91 -0.02 3.65 16 38 H 0.16 3.24 8.06 -2.91 -0.02 3.22 16 39 H 0.15 3.86 6.87 -2.91 -0.02 3.84 16 Total: -1.00 -55.79 309.07 7.15 -48.64 By element: Atomic # 1 Polarization: 25.43 SS G_CDS: 1.06 Total: 26.50 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: 4.51 Total: -12.98 kcal Atomic # 7 Polarization: -63.66 SS G_CDS: -1.17 Total: -64.83 kcal Atomic # 8 Polarization: -33.99 SS G_CDS: -0.05 Total: -34.04 kcal Atomic # 9 Polarization: -4.02 SS G_CDS: 0.78 Total: -3.25 kcal Atomic # 14 Polarization: 37.93 SS G_CDS: 2.03 Total: 39.96 kcal Total: -55.79 7.15 -48.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119438964.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.872 kcal (2) G-P(sol) polarization free energy of solvation -55.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds