Wall clock time and date at job start Tue Mar 31 2020 00:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42896 * 109.47233 * 2 1 4 4 C 1.35749 * 116.99744 * 180.02562 * 3 2 1 5 5 N 1.32149 * 119.72632 * 359.97438 * 4 3 2 6 6 C 1.31994 * 121.71808 * 180.02562 * 5 4 3 7 7 C 1.38074 * 120.97090 * 359.97080 * 6 5 4 8 8 C 1.38742 * 119.34499 * 0.28394 * 7 6 5 9 9 C 1.38947 * 118.42424 * 359.49971 * 8 7 6 10 10 N 1.40170 * 120.50405 * 180.22129 * 9 8 7 11 11 C 1.34776 * 119.99982 * 325.80401 * 10 9 8 12 12 O 1.21593 * 120.00248 * 4.22516 * 11 10 9 13 13 N 1.34779 * 119.99895 * 184.21699 * 11 10 9 14 14 C 1.46505 * 119.99893 * 0.02562 * 13 11 10 15 15 C 1.46495 * 119.99986 * 180.02562 * 13 11 10 16 16 C 1.50698 * 109.47125 * 90.00652 * 15 13 11 17 17 H 1.08003 * 119.99909 * 359.97438 * 16 15 13 18 18 C 1.37870 * 119.99933 * 179.97438 * 16 15 13 19 19 N 1.31510 * 120.00246 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99974 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47382 * 0.02562 * 20 18 16 22 22 H 1.48510 * 109.47011 * 120.00134 * 20 18 16 23 23 H 1.48502 * 109.47582 * 240.00160 * 20 18 16 24 24 H 1.09007 * 109.46511 * 59.99880 * 1 2 3 25 25 H 1.08997 * 109.47425 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47275 * 300.00699 * 1 2 3 27 27 H 1.09003 * 109.46851 * 239.99792 * 2 1 3 28 28 H 1.08999 * 109.46866 * 120.00216 * 2 1 3 29 29 H 1.08008 * 119.51925 * 180.02562 * 6 5 4 30 30 H 1.07999 * 120.32553 * 180.02562 * 7 6 5 31 31 H 1.08000 * 120.78354 * 179.72857 * 8 7 6 32 32 H 0.96996 * 119.99368 * 145.80311 * 10 9 8 33 33 H 1.08996 * 109.47401 * 89.99146 * 14 13 11 34 34 H 1.09001 * 109.46910 * 209.99663 * 14 13 11 35 35 H 1.09010 * 109.46748 * 329.99140 * 14 13 11 36 36 H 1.09002 * 109.46683 * 210.00371 * 15 13 11 37 37 H 1.08997 * 109.46980 * 330.00195 * 15 13 11 38 38 H 0.97006 * 120.00685 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3522 1.5250 -0.0005 5 7 4.1521 0.4731 -0.0005 6 6 5.4659 0.6004 -0.0005 7 6 6.0589 1.8473 -0.0012 8 6 5.2589 2.9807 0.0042 9 6 3.8791 2.8164 -0.0006 10 7 3.0298 3.9315 -0.0002 11 6 3.3874 5.0507 0.6601 12 8 4.4792 5.1211 1.1906 13 7 2.5348 6.0921 0.7322 14 6 1.2192 6.0072 0.0933 15 6 2.9237 7.3088 1.4493 16 6 3.6046 8.2575 0.4968 17 1 3.7350 7.9814 -0.5392 18 6 4.0611 9.4778 0.9477 19 7 3.9027 9.8137 2.2093 20 14 4.9057 10.6534 -0.2329 21 1 4.9593 10.0430 -1.5856 22 1 4.1429 11.9261 -0.2944 23 1 6.2859 10.9260 0.2426 24 1 -0.3632 0.5139 -0.8901 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 6.0862 -0.2838 -0.0009 30 1 7.1350 1.9393 -0.0016 31 1 5.6981 3.9674 0.0082 32 1 2.1848 3.8975 -0.4751 33 1 0.4967 5.6017 0.8016 34 1 0.9023 7.0021 -0.2195 35 1 1.2797 5.3546 -0.7778 36 1 2.0356 7.7856 1.8641 37 1 3.6086 7.0512 2.2572 38 1 4.2242 10.6721 2.5268 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139557655.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:37 Heat of formation + Delta-G solvation = -19.090834 kcal Electronic energy + Delta-G solvation = -21689.933006 eV Core-core repulsion = 18340.635001 eV Total energy + Delta-G solvation = -3349.298004 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.86448 -39.33389 -37.89552 -35.23434 -34.50584 -32.61767 -32.12026 -31.21799 -29.21619 -27.64114 -25.82607 -24.43498 -23.46082 -22.46572 -22.05995 -19.50089 -18.54496 -17.95251 -16.77758 -16.61585 -16.36259 -16.17335 -15.17977 -14.81358 -14.71090 -14.13096 -13.98301 -13.83980 -13.21281 -13.07289 -12.80024 -12.69038 -12.40046 -12.31368 -12.15304 -11.87993 -11.61380 -11.22243 -10.90845 -10.85204 -10.62008 -10.54419 -10.16831 -9.84724 -9.63775 -9.34720 -8.99161 -8.44617 -7.92664 -7.55508 -6.04981 -4.09862 1.22356 1.42310 2.97327 3.13711 3.29376 3.37051 3.41434 3.68590 4.02880 4.34065 4.42905 4.54573 4.86919 4.88637 5.02975 5.12204 5.20565 5.28934 5.34527 5.44404 5.55342 5.63931 5.67854 5.84879 5.87517 6.07067 6.15703 6.26198 6.50494 6.74413 6.86607 7.32434 7.33870 7.48429 7.64681 7.88655 7.92763 8.21866 8.55089 8.91004 9.20186 9.55614 11.02898 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.023430 B = 0.004304 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.775814 B = 6504.547853 C = 7341.918963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.070 3.930 3 O -0.309 6.309 4 C 0.288 3.712 5 N -0.525 5.525 6 C 0.103 3.897 7 C -0.186 4.186 8 C -0.052 4.052 9 C 0.119 3.881 10 N -0.684 5.684 11 C 0.699 3.301 12 O -0.572 6.572 13 N -0.610 5.610 14 C 0.084 3.916 15 C 0.259 3.741 16 C -0.527 4.527 17 H 0.058 0.942 18 C 0.061 3.939 19 N -0.894 5.894 20 Si 0.898 3.102 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.283 1.283 24 H 0.064 0.936 25 H 0.076 0.924 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.157 0.843 30 H 0.138 0.862 31 H 0.163 0.837 32 H 0.406 0.594 33 H 0.046 0.954 34 H 0.079 0.921 35 H 0.050 0.950 36 H 0.035 0.965 37 H 0.046 0.954 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.625 -18.490 -6.093 20.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.006 4.006 3 O -0.217 6.217 4 C 0.106 3.894 5 N -0.248 5.248 6 C -0.053 4.053 7 C -0.206 4.206 8 C -0.080 4.080 9 C 0.020 3.980 10 N -0.335 5.335 11 C 0.401 3.599 12 O -0.449 6.449 13 N -0.345 5.345 14 C -0.060 4.060 15 C 0.140 3.860 16 C -0.566 4.566 17 H 0.076 0.924 18 C -0.141 4.141 19 N -0.534 5.534 20 Si 0.726 3.274 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.209 1.209 24 H 0.083 0.917 25 H 0.095 0.905 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.174 0.826 30 H 0.156 0.844 31 H 0.180 0.820 32 H 0.244 0.756 33 H 0.065 0.935 34 H 0.098 0.902 35 H 0.069 0.931 36 H 0.053 0.947 37 H 0.064 0.936 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.470 -18.796 -5.525 20.095 hybrid contribution 0.418 1.300 -0.837 1.602 sum -4.052 -17.496 -6.362 19.053 Atomic orbital electron populations 1.21821 0.93209 1.02688 1.03360 1.22529 0.94495 0.81290 1.02263 1.86194 1.16704 1.30400 1.88438 1.19542 0.84250 0.88555 0.97060 1.67249 1.06747 1.31718 1.19132 1.22233 0.88963 0.97353 0.96733 1.21945 1.01436 0.92575 1.04694 1.21828 0.90751 1.01380 0.94031 1.17553 0.90703 0.84201 1.05583 1.42751 1.23338 1.12020 1.55352 1.15910 0.84747 0.79699 0.79578 1.90865 1.21116 1.81299 1.51619 1.47485 1.14730 1.15953 1.56328 1.21603 0.85304 1.02947 0.96184 1.19273 0.96260 0.78340 0.92158 1.21490 1.38132 1.00759 0.96182 0.92393 1.24927 0.95889 0.98004 0.95265 1.69940 1.46826 1.22414 1.14173 0.86440 0.79355 0.80547 0.81038 1.19844 1.20979 1.20861 0.91687 0.90491 0.91612 0.91866 0.91818 0.82614 0.84412 0.81999 0.75649 0.93516 0.90218 0.93142 0.94691 0.93621 0.92744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 10.28 37.16 0.38 -0.83 16 2 C 0.07 0.74 6.03 37.16 0.22 0.96 16 3 O -0.31 -4.26 9.69 -18.96 -0.18 -4.45 16 4 C 0.29 4.40 7.51 -16.95 -0.13 4.27 16 5 N -0.52 -7.37 9.21 -13.18 -0.12 -7.50 16 6 C 0.10 1.25 11.17 -17.54 -0.20 1.05 16 7 C -0.19 -2.40 10.10 -39.46 -0.40 -2.80 16 8 C -0.05 -0.85 8.81 -39.13 -0.34 -1.20 16 9 C 0.12 2.00 6.35 -83.32 -0.53 1.47 16 10 N -0.68 -11.89 5.08 -14.00 -0.07 -11.96 16 11 C 0.70 15.15 8.14 -86.92 -0.71 14.44 16 12 O -0.57 -14.46 13.37 5.28 0.07 -14.39 16 13 N -0.61 -13.14 2.86 -188.74 -0.54 -13.68 16 14 C 0.08 1.34 10.24 59.85 0.61 1.95 16 15 C 0.26 6.77 5.16 -5.20 -0.03 6.74 16 16 C -0.53 -14.85 9.38 -34.44 -0.32 -15.18 16 17 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 18 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 19 N -0.89 -26.45 13.29 55.43 0.74 -25.72 16 20 Si 0.90 21.76 29.54 -169.99 -5.02 16.73 16 21 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.64 8.11 -51.93 -0.42 0.22 16 28 H 0.06 0.68 8.11 -51.93 -0.42 0.26 16 29 H 0.16 1.33 8.06 -52.48 -0.42 0.90 16 30 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 31 H 0.16 3.02 6.27 -52.49 -0.33 2.69 16 32 H 0.41 5.99 6.27 -40.82 -0.26 5.73 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 35 H 0.05 0.66 6.30 -51.92 -0.33 0.33 16 36 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 37 H 0.05 1.35 7.42 -51.93 -0.39 0.96 16 38 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 326.43 15.07 4.92 4.92 Total: -1.00 -33.50 326.43 -6.80 -40.30 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -5.06 Total: 3.21 kcal Atomic # 6 Polarization: 14.06 SS G_CDS: -1.53 Total: 12.53 kcal Atomic # 7 Polarization: -58.85 SS G_CDS: 0.00 Total: -58.85 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.11 Total: -18.84 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.50 -6.80 -40.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139557655.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.208 kcal (2) G-P(sol) polarization free energy of solvation -33.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds