Wall clock time and date at job start Tue Mar 31 2020 00:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42896 * 109.47233 * 2 1 4 4 C 1.35749 * 116.99744 * 180.02562 * 3 2 1 5 5 N 1.32149 * 119.72632 * 359.97438 * 4 3 2 6 6 C 1.31994 * 121.71808 * 180.02562 * 5 4 3 7 7 C 1.38074 * 120.97090 * 359.97080 * 6 5 4 8 8 C 1.38742 * 119.34499 * 0.28394 * 7 6 5 9 9 C 1.38947 * 118.42424 * 359.49971 * 8 7 6 10 10 N 1.40170 * 120.50405 * 180.22129 * 9 8 7 11 11 C 1.34776 * 119.99982 * 325.80401 * 10 9 8 12 12 O 1.21593 * 120.00248 * 4.22516 * 11 10 9 13 13 N 1.34779 * 119.99895 * 184.21699 * 11 10 9 14 14 C 1.46505 * 119.99893 * 0.02562 * 13 11 10 15 15 C 1.46495 * 119.99986 * 180.02562 * 13 11 10 16 16 C 1.50698 * 109.47125 * 90.00652 * 15 13 11 17 17 H 1.08003 * 119.99909 * 359.97438 * 16 15 13 18 18 C 1.37870 * 119.99933 * 179.97438 * 16 15 13 19 19 N 1.31510 * 120.00246 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99974 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47382 * 0.02562 * 20 18 16 22 22 H 1.48510 * 109.47011 * 120.00134 * 20 18 16 23 23 H 1.48502 * 109.47582 * 240.00160 * 20 18 16 24 24 H 1.09007 * 109.46511 * 59.99880 * 1 2 3 25 25 H 1.08997 * 109.47425 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47275 * 300.00699 * 1 2 3 27 27 H 1.09003 * 109.46851 * 239.99792 * 2 1 3 28 28 H 1.08999 * 109.46866 * 120.00216 * 2 1 3 29 29 H 1.08008 * 119.51925 * 180.02562 * 6 5 4 30 30 H 1.07999 * 120.32553 * 180.02562 * 7 6 5 31 31 H 1.08000 * 120.78354 * 179.72857 * 8 7 6 32 32 H 0.96996 * 119.99368 * 145.80311 * 10 9 8 33 33 H 1.08996 * 109.47401 * 89.99146 * 14 13 11 34 34 H 1.09001 * 109.46910 * 209.99663 * 14 13 11 35 35 H 1.09010 * 109.46748 * 329.99140 * 14 13 11 36 36 H 1.09002 * 109.46683 * 210.00371 * 15 13 11 37 37 H 1.08997 * 109.46980 * 330.00195 * 15 13 11 38 38 H 0.97006 * 120.00685 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3522 1.5250 -0.0005 5 7 4.1521 0.4731 -0.0005 6 6 5.4659 0.6004 -0.0005 7 6 6.0589 1.8473 -0.0012 8 6 5.2589 2.9807 0.0042 9 6 3.8791 2.8164 -0.0006 10 7 3.0298 3.9315 -0.0002 11 6 3.3874 5.0507 0.6601 12 8 4.4792 5.1211 1.1906 13 7 2.5348 6.0921 0.7322 14 6 1.2192 6.0072 0.0933 15 6 2.9237 7.3088 1.4493 16 6 3.6046 8.2575 0.4968 17 1 3.7350 7.9814 -0.5392 18 6 4.0611 9.4778 0.9477 19 7 3.9027 9.8137 2.2093 20 14 4.9057 10.6534 -0.2329 21 1 4.9593 10.0430 -1.5856 22 1 4.1429 11.9261 -0.2944 23 1 6.2859 10.9260 0.2426 24 1 -0.3632 0.5139 -0.8901 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 6.0862 -0.2838 -0.0009 30 1 7.1350 1.9393 -0.0016 31 1 5.6981 3.9674 0.0082 32 1 2.1848 3.8975 -0.4751 33 1 0.4967 5.6017 0.8016 34 1 0.9023 7.0021 -0.2195 35 1 1.2797 5.3546 -0.7778 36 1 2.0356 7.7856 1.8641 37 1 3.6086 7.0512 2.2572 38 1 4.2242 10.6721 2.5268 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000139557655.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:37 Heat of formation + Delta-G solvation = -43.176283 kcal Electronic energy + Delta-G solvation = -21690.977429 eV Core-core repulsion = 18340.635001 eV Total energy + Delta-G solvation = -3350.342428 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.10934 -40.80572 -38.94368 -36.88202 -36.08684 -34.68837 -33.03691 -32.32472 -30.51255 -29.40465 -27.40504 -25.66058 -24.98491 -23.73335 -23.20119 -21.06305 -19.76683 -19.23520 -18.68127 -18.25675 -17.54196 -17.22861 -16.81704 -16.46765 -16.04900 -15.68834 -15.07640 -14.99457 -14.71599 -14.43120 -14.30344 -13.91212 -13.54298 -13.43787 -13.29218 -13.27708 -13.10883 -12.80878 -12.54509 -12.43185 -12.20611 -11.96539 -11.69451 -11.64898 -11.29163 -10.69233 -10.63830 -10.27713 -9.55269 -8.92464 -8.21026 -6.36123 0.09389 0.26163 1.37703 1.39876 1.51305 1.64769 1.97326 2.12500 2.39794 2.82241 2.97651 3.08769 3.43103 3.87609 4.08525 4.13474 4.15265 4.23377 4.28716 4.47147 4.50562 4.61692 4.79379 4.86178 4.93822 4.98965 4.99244 5.18441 5.19098 5.25999 5.34618 5.53760 5.62614 5.74960 6.00029 6.05905 6.26276 6.72387 6.79923 6.97812 7.30587 7.56701 8.85731 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.023430 B = 0.004304 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.775814 B = 6504.547853 C = 7341.918963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.064 3.936 3 O -0.319 6.319 4 C 0.289 3.711 5 N -0.528 5.528 6 C 0.118 3.882 7 C -0.181 4.181 8 C -0.071 4.071 9 C 0.084 3.916 10 N -0.667 5.667 11 C 0.695 3.305 12 O -0.618 6.618 13 N -0.618 5.618 14 C 0.079 3.921 15 C 0.275 3.725 16 C -0.542 4.542 17 H 0.052 0.948 18 C 0.009 3.991 19 N -0.928 5.928 20 Si 0.969 3.031 21 H -0.269 1.269 22 H -0.269 1.269 23 H -0.281 1.281 24 H 0.067 0.933 25 H 0.101 0.899 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.202 0.798 30 H 0.167 0.833 31 H 0.132 0.868 32 H 0.418 0.582 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.030 0.970 37 H 0.001 0.999 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.890 -20.263 -7.631 22.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.011 4.011 3 O -0.227 6.227 4 C 0.108 3.892 5 N -0.252 5.252 6 C -0.038 4.038 7 C -0.201 4.201 8 C -0.099 4.099 9 C -0.014 4.014 10 N -0.318 5.318 11 C 0.397 3.603 12 O -0.499 6.499 13 N -0.353 5.353 14 C -0.063 4.063 15 C 0.154 3.846 16 C -0.581 4.581 17 H 0.071 0.929 18 C -0.190 4.190 19 N -0.567 5.567 20 Si 0.793 3.207 21 H -0.193 1.193 22 H -0.194 1.194 23 H -0.207 1.207 24 H 0.086 0.914 25 H 0.119 0.881 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.218 0.782 30 H 0.185 0.815 31 H 0.149 0.851 32 H 0.258 0.742 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.048 0.952 37 H 0.019 0.981 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.798 -20.621 -7.102 22.332 hybrid contribution 0.516 1.686 -0.343 1.796 sum -4.282 -18.936 -7.445 20.792 Atomic orbital electron populations 1.21839 0.91143 1.04258 1.03242 1.22799 0.96083 0.79830 1.02374 1.86188 1.15931 1.32433 1.88117 1.19530 0.85097 0.88072 0.96535 1.67408 1.07554 1.30961 1.19291 1.22990 0.88658 0.98471 0.93681 1.22247 1.02659 0.91717 1.03512 1.21764 0.91376 1.01378 0.95346 1.17751 0.90884 0.84538 1.08225 1.42377 1.23867 1.11015 1.54544 1.16057 0.84140 0.80566 0.79575 1.90826 1.23094 1.82374 1.53560 1.47359 1.16722 1.14707 1.56485 1.21879 0.82922 1.03889 0.97619 1.18740 0.94858 0.79811 0.91200 1.21725 1.38680 1.01516 0.96143 0.92930 1.25826 0.96379 0.99768 0.96996 1.70053 1.47614 1.23127 1.15954 0.85356 0.78098 0.78498 0.78747 1.19287 1.19417 1.20719 0.91366 0.88063 0.92130 0.91292 0.92092 0.78159 0.81526 0.85052 0.74228 0.91140 0.90372 0.90060 0.95186 0.98073 0.92362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 10.28 71.98 0.74 -1.27 16 2 C 0.06 1.23 6.03 71.98 0.43 1.66 16 3 O -0.32 -8.38 9.69 -90.75 -0.88 -9.26 16 4 C 0.29 8.53 7.51 84.94 0.64 9.17 16 5 N -0.53 -13.66 9.21 -308.47 -2.84 -16.50 16 6 C 0.12 2.49 11.17 84.63 0.95 3.44 16 7 C -0.18 -4.37 10.10 22.35 0.23 -4.15 16 8 C -0.07 -2.36 8.81 22.56 0.20 -2.16 16 9 C 0.08 2.85 6.35 38.28 0.24 3.09 16 10 N -0.67 -23.44 5.08 -316.46 -1.61 -25.05 16 11 C 0.69 31.21 8.14 179.05 1.46 32.67 16 12 O -0.62 -33.06 13.37 -4.01 -0.05 -33.11 16 13 N -0.62 -27.32 2.86 -869.30 -2.48 -29.80 16 14 C 0.08 2.46 10.24 127.77 1.31 3.77 16 15 C 0.28 15.04 5.16 85.63 0.44 15.48 16 16 C -0.54 -31.38 9.38 25.60 0.24 -31.14 16 17 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 18 C 0.01 0.54 5.46 84.65 0.46 1.00 16 19 N -0.93 -56.06 13.29 21.44 0.28 -55.77 16 20 Si 0.97 44.97 29.54 68.60 2.03 47.00 16 21 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 22 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 23 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 24 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 25 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.07 1.24 8.11 -2.39 -0.02 1.22 16 28 H 0.06 1.20 8.11 -2.39 -0.02 1.18 16 29 H 0.20 2.42 8.06 -2.91 -0.02 2.40 16 30 H 0.17 2.96 8.06 -2.91 -0.02 2.94 16 31 H 0.13 5.22 6.27 -2.91 -0.02 5.20 16 32 H 0.42 12.07 6.27 -92.71 -0.58 11.49 16 33 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.08 2.46 8.07 -2.39 -0.02 2.44 16 35 H 0.08 2.00 6.30 -2.38 -0.02 1.98 16 36 H 0.03 1.65 8.07 -2.39 -0.02 1.63 16 37 H 0.00 0.07 7.42 -2.39 -0.02 0.05 16 38 H 0.27 15.09 8.31 -92.70 -0.77 14.32 16 Total: -1.00 -75.65 326.43 2.27 -73.38 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: 0.49 Total: 17.57 kcal Atomic # 6 Polarization: 24.22 SS G_CDS: 7.34 Total: 31.56 kcal Atomic # 7 Polarization: -120.48 SS G_CDS: -6.65 Total: -127.13 kcal Atomic # 8 Polarization: -41.43 SS G_CDS: -0.93 Total: -42.37 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -75.65 2.27 -73.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139557655.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.204 kcal (2) G-P(sol) polarization free energy of solvation -75.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds