Wall clock time and date at job start Tue Mar 31 2020 01:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35752 * 116.99856 * 2 1 4 4 N 1.32151 * 119.72458 * 359.97438 * 3 2 1 5 5 C 1.31994 * 121.71288 * 179.97438 * 4 3 2 6 6 C 1.38064 * 120.97496 * 359.97438 * 5 4 3 7 7 C 1.38750 * 119.34592 * 0.29833 * 6 5 4 8 8 C 1.38940 * 118.42133 * 359.48331 * 7 6 5 9 9 N 1.40175 * 120.50422 * 180.22449 * 8 7 6 10 10 C 1.34774 * 119.99943 * 325.88170 * 9 8 7 11 11 O 1.21593 * 119.99998 * 4.21746 * 10 9 8 12 12 N 1.34770 * 120.00105 * 184.21721 * 10 9 8 13 13 C 1.46507 * 120.00014 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47036 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.47251 * 180.02562 * 14 13 12 16 16 C 1.50695 * 109.47111 * 179.97438 * 15 14 13 17 17 H 1.07995 * 120.00355 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99812 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99990 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99974 * 359.97438 * 18 16 15 21 21 H 1.48505 * 109.46869 * 90.00340 * 20 18 16 22 22 H 1.48496 * 109.47145 * 210.00113 * 20 18 16 23 23 H 1.48496 * 109.47170 * 330.00716 * 20 18 16 24 24 H 1.09004 * 109.47078 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47516 * 299.99968 * 1 2 3 26 26 H 1.09003 * 109.47097 * 60.00005 * 1 2 3 27 27 H 1.08004 * 119.51528 * 180.02562 * 5 4 3 28 28 H 1.08000 * 120.32971 * 180.02562 * 6 5 4 29 29 H 1.07999 * 120.78752 * 179.70182 * 7 6 5 30 30 H 0.96998 * 120.00231 * 145.87969 * 9 8 7 31 31 H 0.97000 * 120.00446 * 0.02562 * 12 10 9 32 32 H 1.08994 * 109.47350 * 300.00266 * 13 12 10 33 33 H 1.09001 * 109.46583 * 60.00432 * 13 12 10 34 34 H 1.09002 * 109.46982 * 300.00002 * 14 13 12 35 35 H 1.08999 * 109.47571 * 60.00015 * 14 13 12 36 36 H 1.09000 * 109.46692 * 300.00704 * 15 14 13 37 37 H 1.09007 * 109.46851 * 59.99683 * 15 14 13 38 38 H 0.96999 * 119.99694 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 7 1.3202 2.3144 -0.0005 5 6 1.8782 3.5106 0.0000 6 6 3.2514 3.6540 0.0016 7 6 4.0534 2.5218 -0.0036 8 6 3.4385 1.2759 0.0007 9 7 4.2067 0.1033 0.0005 10 6 5.3821 0.0679 -0.6579 11 8 5.8132 1.0743 -1.1869 12 7 6.0798 -1.0829 -0.7299 13 6 7.3573 -1.1215 -1.4461 14 6 7.9377 -2.5355 -1.3778 15 6 9.2721 -2.5757 -2.1251 16 6 9.8441 -3.9683 -2.0573 17 1 9.3095 -4.7467 -1.5332 18 6 11.0504 -4.2483 -2.6635 19 7 11.5493 -5.4637 -2.6048 20 14 11.9753 -2.9017 -3.5695 21 1 12.8921 -2.2110 -2.6273 22 1 12.7629 -3.5009 -4.6767 23 1 11.0064 -1.9228 -4.1244 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.2514 4.3901 -0.0001 28 1 3.6969 4.6378 0.0024 29 1 5.1300 2.6070 -0.0073 30 1 3.8923 -0.6826 0.4742 31 1 5.7358 -1.8859 -0.3082 32 1 7.1982 -0.8444 -2.4881 33 1 8.0531 -0.4201 -0.9857 34 1 8.0968 -2.8130 -0.3357 35 1 7.2417 -3.2367 -1.8383 36 1 9.1134 -2.2979 -3.1671 37 1 9.9680 -1.8746 -1.6642 38 1 12.3978 -5.6608 -3.0316 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171724927.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:57 Heat of formation + Delta-G solvation = -34.166874 kcal Electronic energy + Delta-G solvation = -20670.312034 eV Core-core repulsion = 17320.360284 eV Total energy + Delta-G solvation = -3349.951750 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.25304 -39.82146 -38.06348 -35.97049 -34.94725 -33.41450 -32.03631 -31.42260 -29.93373 -27.55268 -27.06296 -24.07414 -23.23201 -22.58817 -21.05039 -20.31958 -18.88516 -18.39667 -17.74131 -16.84626 -16.69866 -16.26770 -15.64126 -15.44114 -14.97057 -14.55277 -14.39308 -14.15534 -13.88927 -13.62157 -13.46684 -12.75238 -12.71045 -12.16003 -12.04802 -11.94502 -11.50101 -11.11986 -11.07506 -10.88444 -10.50345 -10.10794 -9.99095 -9.82772 -9.71157 -9.46930 -9.24763 -8.98009 -8.56920 -8.15352 -6.07672 -4.06563 0.85748 1.06917 2.48697 2.76258 3.05814 3.30424 3.38170 3.42302 3.59320 4.02230 4.18750 4.43250 4.65349 4.81480 4.93094 5.02835 5.04038 5.17326 5.26440 5.35447 5.47240 5.63238 5.68306 5.89280 5.98127 6.06885 6.28256 6.39066 6.42151 6.58733 6.75471 6.82226 6.96555 7.20720 7.34130 7.56177 7.73787 7.86829 8.44997 8.49230 8.96124 9.54485 11.05556 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.034811 B = 0.002793 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.157500 B =10021.379125 C =10665.704474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.310 6.310 3 C 0.293 3.707 4 N -0.523 5.523 5 C 0.112 3.888 6 C -0.187 4.187 7 C -0.049 4.049 8 C 0.108 3.892 9 N -0.678 5.678 10 C 0.702 3.298 11 O -0.580 6.580 12 N -0.733 5.733 13 C 0.132 3.868 14 C -0.113 4.113 15 C -0.011 4.011 16 C -0.523 4.523 17 H 0.072 0.928 18 C 0.067 3.933 19 N -0.903 5.903 20 Si 0.880 3.120 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.264 1.264 24 H 0.096 0.904 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.160 0.840 28 H 0.140 0.860 29 H 0.160 0.840 30 H 0.411 0.589 31 H 0.398 0.602 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.019 0.981 37 H 0.015 0.985 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.890 15.464 7.724 27.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.217 6.217 3 C 0.111 3.889 4 N -0.247 5.247 5 C -0.044 4.044 6 C -0.208 4.208 7 C -0.077 4.077 8 C 0.010 3.990 9 N -0.326 5.326 10 C 0.402 3.598 11 O -0.458 6.458 12 N -0.387 5.387 13 C 0.009 3.991 14 C -0.152 4.152 15 C -0.049 4.049 16 C -0.561 4.561 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.542 5.542 20 Si 0.707 3.293 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.189 1.189 24 H 0.114 0.886 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.177 0.823 28 H 0.158 0.842 29 H 0.178 0.822 30 H 0.247 0.753 31 H 0.232 0.768 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.037 0.963 37 H 0.033 0.967 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -22.064 15.844 7.136 28.085 hybrid contribution 0.893 -0.049 -0.096 0.900 sum -21.171 15.795 7.040 27.336 Atomic orbital electron populations 1.22841 0.77026 1.02945 1.02397 1.86202 1.23046 1.24230 1.88264 1.19610 0.87587 0.85484 0.96204 1.67298 1.39873 0.98540 1.18957 1.22325 0.93045 0.93432 0.95576 1.21966 0.94399 0.99714 1.04728 1.21742 1.02425 0.89452 0.94101 1.17484 0.86917 0.87600 1.07006 1.42405 1.20932 1.14156 1.55135 1.15964 0.80004 0.84608 0.79217 1.90900 1.69771 1.33371 1.51733 1.45341 1.24067 1.10268 1.59003 1.21600 0.81767 0.99686 0.96088 1.21721 0.99117 0.92670 1.01649 1.19499 0.91833 0.98060 0.95463 1.21089 1.05544 0.94455 1.34969 0.91002 1.25031 0.97250 0.95383 0.95818 1.69910 1.19783 1.19663 1.44822 0.86773 0.80165 0.82485 0.79865 1.20233 1.21375 1.18861 0.88605 0.92344 0.92319 0.82302 0.84179 0.82220 0.75292 0.76773 0.91699 0.91662 0.92044 0.92015 0.96255 0.96691 0.92678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.38 101.05 1.05 1.37 16 2 O -0.31 -3.28 10.05 -18.96 -0.19 -3.47 16 3 C 0.29 3.44 7.51 -16.95 -0.13 3.31 16 4 N -0.52 -5.74 9.22 -13.18 -0.12 -5.86 16 5 C 0.11 1.00 11.17 -17.55 -0.20 0.80 16 6 C -0.19 -1.71 10.10 -39.46 -0.40 -2.11 16 7 C -0.05 -0.58 8.81 -39.13 -0.34 -0.93 16 8 C 0.11 1.33 6.35 -83.32 -0.53 0.80 16 9 N -0.68 -7.90 5.21 -14.00 -0.07 -7.97 16 10 C 0.70 10.11 8.42 -86.93 -0.73 9.38 16 11 O -0.58 -10.25 13.79 5.28 0.07 -10.17 16 12 N -0.73 -9.78 5.56 -65.22 -0.36 -10.14 16 13 C 0.13 2.11 5.67 -4.04 -0.02 2.09 16 14 C -0.11 -2.06 5.27 -26.73 -0.14 -2.20 16 15 C -0.01 -0.24 4.04 -27.88 -0.11 -0.36 16 16 C -0.52 -14.59 9.66 -34.44 -0.33 -14.92 16 17 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 18 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 19 N -0.90 -27.63 13.96 55.43 0.77 -26.86 16 20 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 24 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.42 8.11 -51.93 -0.42 0.00 16 26 H 0.06 0.45 8.11 -51.93 -0.42 0.03 16 27 H 0.16 0.89 8.06 -52.48 -0.42 0.47 16 28 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 29 H 0.16 2.07 6.26 -52.49 -0.33 1.74 16 30 H 0.41 3.72 8.59 -40.82 -0.35 3.37 16 31 H 0.40 4.20 8.49 -40.82 -0.35 3.86 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 37 H 0.01 0.34 7.57 -51.92 -0.39 -0.05 16 38 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 326.32 15.07 4.92 4.92 Total: -1.00 -33.85 326.32 -6.82 -40.67 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -5.18 Total: 2.90 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -1.99 Total: -0.93 kcal Atomic # 7 Polarization: -51.05 SS G_CDS: 0.22 Total: -50.83 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: -0.12 Total: -13.65 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.85 -6.82 -40.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171724927.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.501 kcal (2) G-P(sol) polarization free energy of solvation -33.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds