Wall clock time and date at job start Tue Mar 31 2020 01:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35752 * 116.99856 * 2 1 4 4 N 1.32151 * 119.72458 * 359.97438 * 3 2 1 5 5 C 1.31994 * 121.71288 * 179.97438 * 4 3 2 6 6 C 1.38064 * 120.97496 * 359.97438 * 5 4 3 7 7 C 1.38750 * 119.34592 * 0.29833 * 6 5 4 8 8 C 1.38940 * 118.42133 * 359.48331 * 7 6 5 9 9 N 1.40175 * 120.50422 * 180.22449 * 8 7 6 10 10 C 1.34774 * 119.99943 * 325.88170 * 9 8 7 11 11 O 1.21593 * 119.99998 * 4.21746 * 10 9 8 12 12 N 1.34770 * 120.00105 * 184.21721 * 10 9 8 13 13 C 1.46507 * 120.00014 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47036 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.47251 * 180.02562 * 14 13 12 16 16 C 1.50695 * 109.47111 * 179.97438 * 15 14 13 17 17 H 1.07995 * 120.00355 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99812 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99990 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99974 * 359.97438 * 18 16 15 21 21 H 1.48505 * 109.46869 * 90.00340 * 20 18 16 22 22 H 1.48496 * 109.47145 * 210.00113 * 20 18 16 23 23 H 1.48496 * 109.47170 * 330.00716 * 20 18 16 24 24 H 1.09004 * 109.47078 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47516 * 299.99968 * 1 2 3 26 26 H 1.09003 * 109.47097 * 60.00005 * 1 2 3 27 27 H 1.08004 * 119.51528 * 180.02562 * 5 4 3 28 28 H 1.08000 * 120.32971 * 180.02562 * 6 5 4 29 29 H 1.07999 * 120.78752 * 179.70182 * 7 6 5 30 30 H 0.96998 * 120.00231 * 145.87969 * 9 8 7 31 31 H 0.97000 * 120.00446 * 0.02562 * 12 10 9 32 32 H 1.08994 * 109.47350 * 300.00266 * 13 12 10 33 33 H 1.09001 * 109.46583 * 60.00432 * 13 12 10 34 34 H 1.09002 * 109.46982 * 300.00002 * 14 13 12 35 35 H 1.08999 * 109.47571 * 60.00015 * 14 13 12 36 36 H 1.09000 * 109.46692 * 300.00704 * 15 14 13 37 37 H 1.09007 * 109.46851 * 59.99683 * 15 14 13 38 38 H 0.96999 * 119.99694 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 7 1.3202 2.3144 -0.0005 5 6 1.8782 3.5106 0.0000 6 6 3.2514 3.6540 0.0016 7 6 4.0534 2.5218 -0.0036 8 6 3.4385 1.2759 0.0007 9 7 4.2067 0.1033 0.0005 10 6 5.3821 0.0679 -0.6579 11 8 5.8132 1.0743 -1.1869 12 7 6.0798 -1.0829 -0.7299 13 6 7.3573 -1.1215 -1.4461 14 6 7.9377 -2.5355 -1.3778 15 6 9.2721 -2.5757 -2.1251 16 6 9.8441 -3.9683 -2.0573 17 1 9.3095 -4.7467 -1.5332 18 6 11.0504 -4.2483 -2.6635 19 7 11.5493 -5.4637 -2.6048 20 14 11.9753 -2.9017 -3.5695 21 1 12.8921 -2.2110 -2.6273 22 1 12.7629 -3.5009 -4.6767 23 1 11.0064 -1.9228 -4.1244 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.2514 4.3901 -0.0001 28 1 3.6969 4.6378 0.0024 29 1 5.1300 2.6070 -0.0073 30 1 3.8923 -0.6826 0.4742 31 1 5.7358 -1.8859 -0.3082 32 1 7.1982 -0.8444 -2.4881 33 1 8.0531 -0.4201 -0.9857 34 1 8.0968 -2.8130 -0.3357 35 1 7.2417 -3.2367 -1.8383 36 1 9.1134 -2.2979 -3.1671 37 1 9.9680 -1.8746 -1.6642 38 1 12.3978 -5.6608 -3.0316 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171724927.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:56 Heat of formation + Delta-G solvation = -60.395502 kcal Electronic energy + Delta-G solvation = -20671.449393 eV Core-core repulsion = 17320.360284 eV Total energy + Delta-G solvation = -3351.089109 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.12886 -40.82648 -38.81625 -37.25255 -36.05787 -35.19669 -33.44588 -32.60609 -30.88222 -28.79253 -28.12010 -25.26267 -24.17020 -23.82043 -22.30591 -21.80245 -19.83382 -19.25939 -19.04350 -18.48413 -17.67422 -17.05904 -16.78973 -16.55312 -16.12694 -15.84593 -15.68188 -15.35598 -14.99706 -14.76877 -14.42878 -14.28177 -13.80954 -13.71246 -13.42413 -12.74392 -12.71072 -12.67394 -12.18060 -11.99136 -11.92395 -11.77534 -11.58373 -11.48001 -11.31930 -10.75352 -10.75248 -10.37127 -10.10790 -8.99584 -8.28581 -6.32465 0.06170 0.25559 1.38062 1.39808 1.46098 1.51657 1.96820 2.05578 2.37393 2.79396 3.07393 3.07760 3.43777 3.87972 4.07018 4.10016 4.20312 4.22799 4.44031 4.46238 4.49216 4.51508 4.79030 4.88250 4.90107 4.91424 5.04781 5.16388 5.26666 5.38145 5.49981 5.55593 5.57478 5.65725 5.82583 6.20459 6.28395 6.75822 6.79331 6.88688 7.32437 7.37961 8.87887 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.034811 B = 0.002793 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.157500 B =10021.379125 C =10665.704474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.321 6.321 3 C 0.285 3.715 4 N -0.533 5.533 5 C 0.116 3.884 6 C -0.182 4.182 7 C -0.064 4.064 8 C 0.082 3.918 9 N -0.664 5.664 10 C 0.701 3.299 11 O -0.614 6.614 12 N -0.724 5.724 13 C 0.146 3.854 14 C -0.100 4.100 15 C -0.012 4.012 16 C -0.530 4.530 17 H 0.037 0.963 18 C 0.004 3.996 19 N -0.951 5.951 20 Si 0.948 3.052 21 H -0.267 1.267 22 H -0.286 1.286 23 H -0.246 1.246 24 H 0.120 0.880 25 H 0.061 0.939 26 H 0.054 0.946 27 H 0.196 0.804 28 H 0.169 0.831 29 H 0.144 0.856 30 H 0.423 0.577 31 H 0.413 0.587 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.021 0.979 37 H 0.022 0.978 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.217 17.636 7.770 30.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.228 6.228 3 C 0.103 3.897 4 N -0.257 5.257 5 C -0.039 4.039 6 C -0.202 4.202 7 C -0.092 4.092 8 C -0.016 4.016 9 N -0.314 5.314 10 C 0.402 3.598 11 O -0.495 6.495 12 N -0.379 5.379 13 C 0.022 3.978 14 C -0.138 4.138 15 C -0.050 4.050 16 C -0.568 4.568 17 H 0.056 0.944 18 C -0.193 4.193 19 N -0.592 5.592 20 Si 0.771 3.229 21 H -0.192 1.192 22 H -0.212 1.212 23 H -0.170 1.170 24 H 0.138 0.862 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.213 0.787 28 H 0.186 0.814 29 H 0.162 0.838 30 H 0.261 0.739 31 H 0.249 0.751 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -23.448 17.997 7.218 30.427 hybrid contribution 1.184 -0.733 -0.047 1.394 sum -22.263 17.264 7.171 29.071 Atomic orbital electron populations 1.23045 0.75560 1.04565 1.02338 1.86182 1.24531 1.23943 1.88150 1.19696 0.87497 0.86113 0.96352 1.67395 1.40046 0.99006 1.19284 1.22981 0.93488 0.93888 0.93559 1.22277 0.94457 1.00133 1.03369 1.21785 1.02051 0.90441 0.94930 1.17671 0.87426 0.87769 1.08695 1.42180 1.19949 1.14721 1.54522 1.16025 0.80530 0.84147 0.79130 1.90877 1.70786 1.34556 1.53249 1.45054 1.23242 1.10813 1.58801 1.21228 0.82734 0.97838 0.95993 1.21484 0.96927 0.94197 1.01217 1.19462 0.94163 0.94995 0.96369 1.21473 1.05402 0.96094 1.33876 0.94450 1.25997 0.98502 0.97820 0.96993 1.70061 1.20585 1.22091 1.46487 0.85691 0.79012 0.79558 0.78609 1.19182 1.21184 1.16997 0.86216 0.92027 0.92684 0.78683 0.81383 0.83805 0.73942 0.75064 0.92447 0.91962 0.91557 0.91774 0.96039 0.96003 0.92535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 10.38 113.37 1.18 1.71 16 2 O -0.32 -6.43 10.05 -90.77 -0.91 -7.34 16 3 C 0.29 6.38 7.51 84.94 0.64 7.02 16 4 N -0.53 -10.74 9.22 -308.48 -2.84 -13.59 16 5 C 0.12 1.77 11.17 84.63 0.95 2.72 16 6 C -0.18 -2.96 10.10 22.35 0.23 -2.73 16 7 C -0.06 -1.47 8.81 22.56 0.20 -1.27 16 8 C 0.08 1.97 6.35 38.27 0.24 2.21 16 9 N -0.66 -15.05 5.21 -316.47 -1.65 -16.70 16 10 C 0.70 19.73 8.42 179.06 1.51 21.24 16 11 O -0.61 -21.56 13.79 -4.01 -0.06 -21.61 16 12 N -0.72 -18.45 5.56 -478.53 -2.66 -21.11 16 13 C 0.15 4.50 5.67 86.38 0.49 4.99 16 14 C -0.10 -3.53 5.27 30.59 0.16 -3.37 16 15 C -0.01 -0.53 4.04 29.85 0.12 -0.41 16 16 C -0.53 -29.90 9.66 25.60 0.25 -29.65 16 17 H 0.04 2.29 7.99 -2.91 -0.02 2.27 16 18 C 0.00 0.21 5.47 84.66 0.46 0.67 16 19 N -0.95 -59.39 13.96 21.45 0.30 -59.09 16 20 Si 0.95 44.12 27.47 68.60 1.88 46.00 16 21 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 22 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 23 H -0.25 -10.69 6.54 99.48 0.65 -10.03 16 24 H 0.12 1.00 8.14 -2.38 -0.02 0.98 16 25 H 0.06 0.79 8.11 -2.39 -0.02 0.77 16 26 H 0.05 0.78 8.11 -2.39 -0.02 0.76 16 27 H 0.20 1.43 8.06 -2.91 -0.02 1.41 16 28 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 29 H 0.14 3.75 6.26 -2.91 -0.02 3.73 16 30 H 0.42 7.26 8.59 -92.71 -0.80 6.46 16 31 H 0.41 8.08 8.49 -92.71 -0.79 7.29 16 32 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.07 2.26 8.14 -2.39 -0.02 2.25 16 35 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.02 0.96 7.20 -2.39 -0.02 0.94 16 37 H 0.02 0.95 7.57 -2.38 -0.02 0.93 16 38 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -73.72 326.32 -0.07 -73.79 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -0.55 Total: 16.50 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: 6.42 Total: 3.13 kcal Atomic # 7 Polarization: -103.63 SS G_CDS: -6.85 Total: -110.48 kcal Atomic # 8 Polarization: -27.98 SS G_CDS: -0.97 Total: -28.95 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.88 Total: 46.00 kcal Total: -73.72 -0.07 -73.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171724927.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.395 kcal (2) G-P(sol) polarization free energy of solvation -73.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds