Wall clock time and date at job start Tue Mar 31 2020 00:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42902 * 109.47451 * 2 1 4 4 C 1.42899 * 114.00183 * 179.97438 * 3 2 1 5 5 H 1.08993 * 115.55873 * 4.31457 * 4 3 2 6 6 C 1.53073 * 117.51280 * 218.60581 * 4 3 2 7 7 C 1.52996 * 59.98549 * 252.52746 * 6 4 3 8 8 H 1.08999 * 117.49942 * 252.50395 * 7 6 4 9 9 C 1.50700 * 117.49994 * 107.50316 * 7 6 4 10 10 O 1.21293 * 119.99810 * 291.25172 * 9 7 6 11 11 N 1.34777 * 119.99675 * 111.53044 * 9 7 6 12 12 C 1.40160 * 119.99865 * 179.72968 * 11 9 7 13 13 C 1.40412 * 125.96835 * 359.70517 * 12 11 9 14 14 C 1.35238 * 107.86207 * 179.86881 * 13 12 11 15 15 N 1.34970 * 107.86273 * 0.39731 * 14 13 12 16 16 C 1.46502 * 125.97561 * 179.74755 * 15 14 13 17 17 C 1.50701 * 109.46873 * 124.97644 * 16 15 14 18 18 H 1.07995 * 119.99981 * 359.97438 * 17 16 15 19 19 C 1.37883 * 119.99787 * 180.02562 * 17 16 15 20 20 N 1.31517 * 120.00105 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99914 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46857 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47253 * 119.99272 * 21 19 17 24 24 H 1.48497 * 109.46599 * 239.99512 * 21 19 17 25 25 N 1.31216 * 125.97517 * 180.02562 * 12 11 9 26 26 H 1.08995 * 109.47676 * 300.00375 * 1 2 3 27 27 H 1.09001 * 109.47042 * 60.00123 * 1 2 3 28 28 H 1.08997 * 109.47264 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47519 * 239.99620 * 2 1 3 30 30 H 1.09001 * 109.47042 * 119.99877 * 2 1 3 31 31 H 1.09002 * 117.48967 * 145.03488 * 6 4 3 32 32 H 1.09000 * 117.51296 * 0.02562 * 6 4 3 33 33 H 0.97001 * 120.00485 * 359.71840 * 11 9 7 34 34 H 1.08001 * 126.07007 * 0.02562 * 13 12 11 35 35 H 1.08002 * 126.06910 * 180.14615 * 14 13 12 36 36 H 1.08994 * 109.47104 * 244.97704 * 16 15 14 37 37 H 1.09000 * 109.47135 * 4.97704 * 16 15 14 38 38 H 0.96992 * 119.99742 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.9771 0.5197 -0.0730 6 6 4.0517 2.5736 0.8478 7 6 4.0426 2.6874 -0.6779 8 1 4.9911 2.5544 -1.1982 9 6 3.0967 3.6848 -1.2956 10 8 1.8994 3.4973 -1.2446 11 7 3.5814 4.7823 -1.9097 12 6 2.7019 5.7070 -2.4892 13 6 1.3011 5.6126 -2.5086 14 6 0.8211 6.6984 -3.1564 15 7 1.8741 7.4494 -3.5421 16 6 1.8055 8.7132 -4.2801 17 6 2.5462 9.7811 -3.5172 18 1 3.0202 9.5425 -2.5767 19 6 2.6178 11.0631 -4.0197 20 7 2.0402 11.3538 -5.1649 21 14 3.5366 12.3868 -3.0745 22 1 4.0931 11.8072 -1.8256 23 1 4.6435 12.9149 -3.9117 24 1 2.6030 13.4904 -2.7345 25 7 3.0439 6.8093 -3.1135 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 5.0062 2.3653 1.3313 32 1 3.3736 3.2199 1.4050 33 1 4.5389 4.9323 -1.9505 34 1 0.7115 4.8158 -2.0799 35 1 -0.2199 6.9224 -3.3370 36 1 2.2612 8.5857 -5.2619 37 1 0.7630 9.0084 -4.3989 38 1 2.0909 12.2556 -5.5184 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172091213.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:58 Heat of formation + Delta-G solvation = 33.108194 kcal Electronic energy + Delta-G solvation = -20957.533345 eV Core-core repulsion = 17610.498860 eV Total energy + Delta-G solvation = -3347.034485 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.64442 -39.64953 -37.99482 -35.33591 -34.53811 -33.28970 -31.03022 -30.77773 -29.24742 -26.85368 -24.85127 -23.03266 -22.77237 -22.35170 -21.07957 -19.96347 -19.39051 -17.71024 -16.65092 -16.54802 -15.88941 -15.68078 -15.60693 -15.11267 -14.74139 -14.21346 -14.10619 -13.64250 -13.20041 -12.79682 -12.69613 -12.55338 -12.30059 -12.27925 -12.18778 -11.72533 -11.36260 -11.16779 -11.02991 -10.85160 -10.72090 -10.31258 -10.23987 -9.90439 -9.47331 -9.43033 -9.23952 -8.61927 -8.05676 -7.39402 -6.22579 -4.27377 2.35198 2.84381 2.95180 3.23551 3.29537 3.30930 3.38007 3.54458 3.88499 3.93361 4.33724 4.51744 4.57128 4.70869 4.90189 4.92063 5.08659 5.12619 5.16584 5.17449 5.41991 5.56279 5.63006 5.75179 5.76534 5.88842 6.01933 6.36773 6.56406 6.71405 6.90326 7.08297 7.10761 7.50790 7.66271 7.74898 7.92987 8.09539 8.44343 8.69723 8.83636 9.38195 10.86211 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.033043 B = 0.003189 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.188334 B = 8779.315757 C = 9304.390485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.056 3.944 3 O -0.323 6.323 4 C 0.053 3.947 5 H 0.118 0.882 6 C -0.160 4.160 7 C -0.192 4.192 8 H 0.130 0.870 9 C 0.544 3.456 10 O -0.491 6.491 11 N -0.632 5.632 12 C 0.259 3.741 13 C -0.287 4.287 14 C 0.050 3.950 15 N -0.320 5.320 16 C 0.258 3.742 17 C -0.527 4.527 18 H 0.069 0.931 19 C 0.061 3.939 20 N -0.896 5.896 21 Si 0.908 3.092 22 H -0.271 1.271 23 H -0.281 1.281 24 H -0.282 1.282 25 N -0.307 5.307 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.047 0.953 30 H 0.046 0.954 31 H 0.112 0.888 32 H 0.108 0.892 33 H 0.409 0.591 34 H 0.160 0.840 35 H 0.167 0.833 36 H 0.045 0.955 37 H 0.057 0.943 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.377 -21.429 9.785 23.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.241 6.241 4 C -0.007 4.007 5 H 0.136 0.864 6 C -0.198 4.198 7 C -0.214 4.214 8 H 0.148 0.852 9 C 0.329 3.671 10 O -0.362 6.362 11 N -0.280 5.280 12 C 0.006 3.994 13 C -0.319 4.319 14 C -0.100 4.100 15 N -0.102 5.102 16 C 0.141 3.859 17 C -0.565 4.565 18 H 0.087 0.913 19 C -0.141 4.141 20 N -0.534 5.534 21 Si 0.735 3.265 22 H -0.196 1.196 23 H -0.207 1.207 24 H -0.208 1.208 25 N -0.138 5.138 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.130 0.870 32 H 0.126 0.874 33 H 0.244 0.756 34 H 0.177 0.823 35 H 0.184 0.816 36 H 0.062 0.938 37 H 0.074 0.926 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.275 -20.425 9.245 22.535 hybrid contribution 0.574 0.350 0.491 0.832 sum 2.848 -20.075 9.735 22.492 Atomic orbital electron populations 1.21707 0.93532 1.01869 1.03650 1.22544 0.95977 0.83927 0.99642 1.88191 1.16899 1.25463 1.93506 1.22553 0.83758 0.92825 1.01515 0.86434 1.23469 1.03125 1.02394 0.90791 1.22689 1.01303 0.99994 0.97399 0.85182 1.19448 0.88821 0.80616 0.78264 1.90697 1.15147 1.74372 1.55967 1.42482 1.09379 1.20867 1.55291 1.19127 0.89929 0.91219 0.99102 1.21537 0.92489 1.03601 1.14238 1.22554 0.94737 0.92820 0.99877 1.49061 1.01360 1.18860 1.40940 1.19735 0.99264 0.75482 0.91464 1.21308 1.34466 0.93243 1.07503 0.91253 1.24954 0.95520 0.98555 0.95118 1.69928 1.43732 1.20993 1.18774 0.86274 0.79416 0.80906 0.79924 1.19555 1.20701 1.20769 1.77321 1.08573 1.07239 1.20668 0.91849 0.91425 0.91339 0.93431 0.93575 0.87014 0.87396 0.75617 0.82288 0.81567 0.93756 0.92567 0.92400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 10.28 37.16 0.38 -0.94 16 2 C 0.06 0.50 6.53 37.16 0.24 0.75 16 3 O -0.32 -4.06 8.48 -57.36 -0.49 -4.54 16 4 C 0.05 0.50 6.41 -26.69 -0.17 0.33 16 5 H 0.12 0.72 7.93 -51.93 -0.41 0.31 16 6 C -0.16 -1.39 10.19 -26.70 -0.27 -1.66 16 7 C -0.19 -1.96 6.19 -91.77 -0.57 -2.53 16 8 H 0.13 0.92 8.14 -51.93 -0.42 0.50 16 9 C 0.54 8.31 7.58 -10.98 -0.08 8.22 16 10 O -0.49 -9.14 12.05 -16.59 -0.20 -9.34 16 11 N -0.63 -10.29 5.45 -11.13 -0.06 -10.35 16 12 C 0.26 5.42 8.11 -154.39 -1.25 4.17 16 13 C -0.29 -5.96 9.61 -39.83 -0.38 -6.35 16 14 C 0.05 1.04 11.44 -17.24 -0.20 0.84 16 15 N -0.32 -7.67 3.67 -62.56 -0.23 -7.90 16 16 C 0.26 6.69 6.26 -5.19 -0.03 6.66 16 17 C -0.53 -14.89 9.24 -34.44 -0.32 -15.21 16 18 H 0.07 2.04 7.81 -52.49 -0.41 1.63 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 20 N -0.90 -25.62 13.29 55.43 0.74 -24.88 16 21 Si 0.91 21.58 29.54 -169.99 -5.02 16.56 16 22 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 N -0.31 -7.28 12.42 31.44 0.39 -6.89 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.41 5.42 8.82 -40.82 -0.36 5.06 16 34 H 0.16 3.24 5.92 -52.49 -0.31 2.93 16 35 H 0.17 2.83 8.06 -52.49 -0.42 2.41 16 36 H 0.04 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.06 1.43 8.07 -51.93 -0.42 1.01 16 38 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 331.68 15.07 5.00 5.00 Total: -1.00 -34.26 331.68 -7.89 -42.15 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -5.27 Total: 4.29 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -2.75 Total: -4.10 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: 0.84 Total: -50.02 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: -0.69 Total: -13.88 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.26 -7.89 -42.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172091213.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.262 kcal (2) G-P(sol) polarization free energy of solvation -34.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds