Wall clock time and date at job start Tue Mar 31 2020 00:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42902 * 109.47451 * 2 1 4 4 C 1.42899 * 114.00183 * 179.97438 * 3 2 1 5 5 H 1.08993 * 115.55873 * 4.31457 * 4 3 2 6 6 C 1.53073 * 117.51280 * 218.60581 * 4 3 2 7 7 C 1.52996 * 59.98549 * 252.52746 * 6 4 3 8 8 H 1.08999 * 117.49942 * 252.50395 * 7 6 4 9 9 C 1.50700 * 117.49994 * 107.50316 * 7 6 4 10 10 O 1.21293 * 119.99810 * 291.25172 * 9 7 6 11 11 N 1.34777 * 119.99675 * 111.53044 * 9 7 6 12 12 C 1.40160 * 119.99865 * 179.72968 * 11 9 7 13 13 C 1.40412 * 125.96835 * 359.70517 * 12 11 9 14 14 C 1.35238 * 107.86207 * 179.86881 * 13 12 11 15 15 N 1.34970 * 107.86273 * 0.39731 * 14 13 12 16 16 C 1.46502 * 125.97561 * 179.74755 * 15 14 13 17 17 C 1.50701 * 109.46873 * 124.97644 * 16 15 14 18 18 H 1.07995 * 119.99981 * 359.97438 * 17 16 15 19 19 C 1.37883 * 119.99787 * 180.02562 * 17 16 15 20 20 N 1.31517 * 120.00105 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99914 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46857 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47253 * 119.99272 * 21 19 17 24 24 H 1.48497 * 109.46599 * 239.99512 * 21 19 17 25 25 N 1.31216 * 125.97517 * 180.02562 * 12 11 9 26 26 H 1.08995 * 109.47676 * 300.00375 * 1 2 3 27 27 H 1.09001 * 109.47042 * 60.00123 * 1 2 3 28 28 H 1.08997 * 109.47264 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47519 * 239.99620 * 2 1 3 30 30 H 1.09001 * 109.47042 * 119.99877 * 2 1 3 31 31 H 1.09002 * 117.48967 * 145.03488 * 6 4 3 32 32 H 1.09000 * 117.51296 * 0.02562 * 6 4 3 33 33 H 0.97001 * 120.00485 * 359.71840 * 11 9 7 34 34 H 1.08001 * 126.07007 * 0.02562 * 13 12 11 35 35 H 1.08002 * 126.06910 * 180.14615 * 14 13 12 36 36 H 1.08994 * 109.47104 * 244.97704 * 16 15 14 37 37 H 1.09000 * 109.47135 * 4.97704 * 16 15 14 38 38 H 0.96992 * 119.99742 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.9771 0.5197 -0.0730 6 6 4.0517 2.5736 0.8478 7 6 4.0426 2.6874 -0.6779 8 1 4.9911 2.5544 -1.1982 9 6 3.0967 3.6848 -1.2956 10 8 1.8994 3.4973 -1.2446 11 7 3.5814 4.7823 -1.9097 12 6 2.7019 5.7070 -2.4892 13 6 1.3011 5.6126 -2.5086 14 6 0.8211 6.6984 -3.1564 15 7 1.8741 7.4494 -3.5421 16 6 1.8055 8.7132 -4.2801 17 6 2.5462 9.7811 -3.5172 18 1 3.0202 9.5425 -2.5767 19 6 2.6178 11.0631 -4.0197 20 7 2.0402 11.3538 -5.1649 21 14 3.5366 12.3868 -3.0745 22 1 4.0931 11.8072 -1.8256 23 1 4.6435 12.9149 -3.9117 24 1 2.6030 13.4904 -2.7345 25 7 3.0439 6.8093 -3.1135 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 5.0062 2.3653 1.3313 32 1 3.3736 3.2199 1.4050 33 1 4.5389 4.9323 -1.9505 34 1 0.7115 4.8158 -2.0799 35 1 -0.2199 6.9224 -3.3370 36 1 2.2612 8.5857 -5.2619 37 1 0.7630 9.0084 -4.3989 38 1 2.0909 12.2556 -5.5184 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172091213.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:57 Heat of formation + Delta-G solvation = 11.129548 kcal Electronic energy + Delta-G solvation = -20958.486410 eV Core-core repulsion = 17610.498860 eV Total energy + Delta-G solvation = -3347.987550 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.20669 -40.85129 -38.95088 -36.29908 -35.93682 -35.23178 -32.78217 -31.60223 -30.95536 -28.73767 -26.17648 -24.55722 -23.71044 -23.05842 -22.51301 -21.53014 -20.71333 -18.71069 -18.68077 -18.16489 -17.11490 -16.91417 -16.46259 -16.33379 -16.25833 -15.74602 -15.48754 -14.96867 -14.56682 -14.25233 -13.94928 -13.81625 -13.67080 -13.52485 -13.24591 -12.99442 -12.91825 -12.72792 -12.32323 -12.08731 -12.01826 -11.82949 -11.59769 -11.41964 -11.35551 -10.74450 -10.70510 -10.02634 -9.75388 -9.11013 -8.34306 -6.48629 0.95059 1.36542 1.36743 1.40135 1.45020 1.52384 2.18507 2.30009 2.42710 2.64475 2.91453 2.97240 3.64847 3.82294 3.90688 4.02370 4.20381 4.25120 4.26652 4.43955 4.53573 4.55679 4.79387 4.85880 4.90271 4.91863 4.93344 5.01044 5.06247 5.07604 5.19811 5.31346 5.55686 5.78757 5.95045 6.25445 6.32958 6.45544 6.63972 7.05101 7.21461 7.22717 8.73655 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.033043 B = 0.003189 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.188334 B = 8779.315757 C = 9304.390485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.051 3.949 3 O -0.365 6.365 4 C 0.049 3.951 5 H 0.158 0.842 6 C -0.148 4.148 7 C -0.199 4.199 8 H 0.168 0.832 9 C 0.538 3.462 10 O -0.528 6.528 11 N -0.627 5.627 12 C 0.266 3.734 13 C -0.296 4.296 14 C 0.056 3.944 15 N -0.345 5.345 16 C 0.272 3.728 17 C -0.548 4.548 18 H 0.051 0.949 19 C 0.018 3.982 20 N -0.921 5.921 21 Si 0.973 3.027 22 H -0.275 1.275 23 H -0.272 1.272 24 H -0.269 1.269 25 N -0.347 5.347 26 H 0.053 0.947 27 H 0.043 0.957 28 H 0.094 0.906 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.152 0.848 32 H 0.082 0.918 33 H 0.423 0.577 34 H 0.163 0.837 35 H 0.200 0.800 36 H 0.022 0.978 37 H 0.058 0.942 38 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.733 -22.740 11.114 25.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.025 4.025 3 O -0.283 6.283 4 C -0.010 4.010 5 H 0.175 0.825 6 C -0.185 4.185 7 C -0.221 4.221 8 H 0.185 0.815 9 C 0.325 3.675 10 O -0.401 6.401 11 N -0.277 5.277 12 C 0.011 3.989 13 C -0.327 4.327 14 C -0.093 4.093 15 N -0.126 5.126 16 C 0.153 3.847 17 C -0.586 4.586 18 H 0.070 0.930 19 C -0.182 4.182 20 N -0.560 5.560 21 Si 0.798 3.202 22 H -0.199 1.199 23 H -0.197 1.197 24 H -0.194 1.194 25 N -0.178 5.178 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.112 0.888 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.169 0.831 32 H 0.101 0.899 33 H 0.260 0.740 34 H 0.181 0.819 35 H 0.217 0.783 36 H 0.040 0.960 37 H 0.076 0.924 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.647 -21.764 10.580 24.473 hybrid contribution 0.102 0.630 0.118 0.648 sum 3.749 -21.134 10.698 23.982 Atomic orbital electron populations 1.21743 0.94060 1.03033 1.01979 1.22721 0.95704 0.82923 1.01194 1.88145 1.18941 1.27557 1.93702 1.23016 0.82910 0.94172 1.00901 0.82498 1.23575 1.04278 1.01309 0.89373 1.22808 1.01669 0.99065 0.98513 0.81462 1.20510 0.89355 0.80475 0.77115 1.90672 1.17220 1.75080 1.57157 1.42720 1.09670 1.20347 1.54939 1.19522 0.90946 0.90867 0.97522 1.21697 0.92731 1.03750 1.14513 1.23145 0.95688 0.91999 0.98472 1.48843 1.02355 1.19023 1.42426 1.19346 0.98684 0.76145 0.90478 1.21424 1.35333 0.94534 1.07273 0.93046 1.25762 0.96068 1.00469 0.95948 1.70001 1.44305 1.21886 1.19784 0.85273 0.78448 0.78158 0.78371 1.19939 1.19698 1.19443 1.77242 1.09191 1.08697 1.22672 0.92799 0.93749 0.88771 0.92412 0.91255 0.83072 0.89937 0.73960 0.81922 0.78277 0.96027 0.92400 0.91789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 10.28 71.98 0.74 -1.82 16 2 C 0.05 0.83 6.53 71.98 0.47 1.30 16 3 O -0.37 -8.74 8.48 -127.82 -1.08 -9.83 16 4 C 0.05 0.78 6.41 30.62 0.20 0.98 16 5 H 0.16 1.21 7.93 -2.39 -0.02 1.19 16 6 C -0.15 -2.15 10.19 30.62 0.31 -1.84 16 7 C -0.20 -3.54 6.19 -11.54 -0.07 -3.61 16 8 H 0.17 1.68 8.14 -2.39 -0.02 1.66 16 9 C 0.54 16.02 7.58 87.66 0.66 16.69 16 10 O -0.53 -19.79 12.05 18.09 0.22 -19.57 16 11 N -0.63 -20.12 5.45 -307.51 -1.68 -21.80 16 12 C 0.27 11.24 8.11 133.33 1.08 12.33 16 13 C -0.30 -12.40 9.61 22.11 0.21 -12.19 16 14 C 0.06 2.32 11.44 83.52 0.96 3.28 16 15 N -0.34 -16.88 3.67 -351.84 -1.29 -18.17 16 16 C 0.27 14.53 6.26 85.63 0.54 15.07 16 17 C -0.55 -31.59 9.24 25.60 0.24 -31.36 16 18 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 19 C 0.02 1.00 5.46 84.66 0.46 1.46 16 20 N -0.92 -52.87 13.29 21.45 0.28 -52.58 16 21 Si 0.97 44.19 29.54 68.60 2.03 46.21 16 22 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 23 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 24 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 25 N -0.35 -16.83 12.42 -54.45 -0.68 -17.51 16 26 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 30 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.15 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.42 10.83 8.82 -92.71 -0.82 10.01 16 34 H 0.16 6.73 5.92 -2.91 -0.02 6.72 16 35 H 0.20 6.65 8.06 -2.91 -0.02 6.63 16 36 H 0.02 1.23 8.14 -2.39 -0.02 1.22 16 37 H 0.06 3.02 8.07 -2.39 -0.02 3.00 16 38 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -76.34 331.68 3.85 -72.49 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: 0.26 Total: 20.47 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: 5.79 Total: 0.28 kcal Atomic # 7 Polarization: -106.70 SS G_CDS: -3.36 Total: -110.06 kcal Atomic # 8 Polarization: -28.53 SS G_CDS: -0.87 Total: -29.40 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Total: -76.34 3.85 -72.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172091213.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.620 kcal (2) G-P(sol) polarization free energy of solvation -76.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds