Wall clock time and date at job start Tue Mar 31 2020 00:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42900 * 109.46788 * 2 1 4 4 C 1.42914 * 113.99831 * 180.02562 * 3 2 1 5 5 H 1.08998 * 115.54696 * 355.66896 * 4 3 2 6 6 C 1.52997 * 117.49927 * 141.37941 * 4 3 2 7 7 C 1.53000 * 60.00103 * 107.48501 * 6 4 3 8 8 H 1.08993 * 117.51862 * 252.51853 * 7 6 4 9 9 C 1.50698 * 117.49427 * 107.48509 * 7 6 4 10 10 O 1.21288 * 120.00450 * 291.37667 * 9 7 6 11 11 N 1.34775 * 120.00025 * 111.38140 * 9 7 6 12 12 C 1.40155 * 120.00331 * 179.97438 * 11 9 7 13 13 C 1.40409 * 125.97443 * 359.71943 * 12 11 9 14 14 C 1.35229 * 107.87057 * 180.26317 * 13 12 11 15 15 N 1.34974 * 107.86211 * 359.97438 * 14 13 12 16 16 C 1.46494 * 125.97468 * 180.02562 * 15 14 13 17 17 C 1.50705 * 109.46907 * 125.00310 * 16 15 14 18 18 H 1.07994 * 120.00169 * 0.02562 * 17 16 15 19 19 C 1.37881 * 120.00135 * 179.97438 * 17 16 15 20 20 N 1.31523 * 119.99865 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00283 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46836 * 60.00011 * 21 19 17 23 23 H 1.48496 * 109.47103 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47327 * 300.00231 * 21 19 17 25 25 N 1.31224 * 125.97430 * 180.02562 * 12 11 9 26 26 H 1.08999 * 109.47526 * 299.99940 * 1 2 3 27 27 H 1.09001 * 109.47220 * 59.99990 * 1 2 3 28 28 H 1.09001 * 109.47039 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47193 * 240.00444 * 2 1 3 30 30 H 1.09001 * 109.47220 * 120.00010 * 2 1 3 31 31 H 1.09008 * 117.49749 * 359.97438 * 6 4 3 32 32 H 1.08999 * 117.49992 * 214.98073 * 6 4 3 33 33 H 0.97002 * 120.00056 * 359.97438 * 11 9 7 34 34 H 1.08000 * 126.06439 * 0.21975 * 13 12 11 35 35 H 1.08001 * 126.06998 * 180.02562 * 14 13 12 36 36 H 1.09007 * 109.47436 * 244.99913 * 16 15 14 37 37 H 1.08996 * 109.47677 * 5.00171 * 16 15 14 38 38 H 0.96993 * 120.00209 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 1 3.9770 0.5198 0.0733 6 6 4.0510 2.5731 -0.8477 7 6 4.0425 2.6876 0.6780 8 1 3.3584 3.4087 1.1250 9 6 5.3542 2.5038 1.3968 10 8 5.8846 1.4133 1.4218 11 7 5.9380 3.5512 2.0120 12 6 7.1577 3.3803 2.6809 13 6 7.8753 2.1787 2.7936 14 6 8.9910 2.4278 3.5160 15 7 8.9847 3.7356 3.8497 16 6 10.0104 4.4288 4.6330 17 6 10.5200 5.6149 3.8554 18 1 10.1196 5.8310 2.8760 19 6 11.4967 6.4249 4.3949 20 7 11.9840 6.1621 5.5879 21 14 12.1289 7.8947 3.4308 22 1 11.0050 8.8246 3.1525 23 1 13.1676 8.5982 4.2254 24 1 12.7161 7.4301 2.1484 25 7 7.8258 4.3140 3.3163 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.3724 3.2190 -1.4050 32 1 5.0053 2.3650 -1.3316 33 1 5.5141 4.4235 1.9917 34 1 7.5870 1.2246 2.3777 35 1 9.7524 1.7082 3.7786 36 1 9.5800 4.7695 5.5747 37 1 10.8354 3.7462 4.8365 38 1 12.6714 6.7316 5.9673 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172091219.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:59 Heat of formation + Delta-G solvation = 6.886104 kcal Electronic energy + Delta-G solvation = -20545.813235 eV Core-core repulsion = 17197.641675 eV Total energy + Delta-G solvation = -3348.171560 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.26282 -40.97080 -39.19263 -36.42545 -35.98946 -35.27378 -32.80920 -31.68604 -30.98204 -28.74632 -26.22523 -24.58717 -23.78171 -23.15854 -22.55804 -21.58489 -20.81059 -18.73840 -18.67248 -18.26685 -17.34449 -17.06215 -16.52184 -16.47240 -16.33316 -15.82237 -15.59375 -15.17157 -14.56149 -14.25565 -13.84905 -13.76710 -13.71527 -13.57974 -13.34817 -13.05470 -12.92521 -12.72496 -12.29850 -12.16647 -12.08778 -11.89363 -11.65894 -11.61056 -11.41296 -10.94076 -10.72611 -10.23287 -9.78639 -9.15205 -8.33799 -6.47997 0.85920 1.29493 1.35196 1.39076 1.40525 1.49582 2.12320 2.18404 2.35283 2.61437 2.81561 2.97986 3.53341 3.69734 3.89976 4.02617 4.06334 4.20813 4.25811 4.33720 4.48101 4.53598 4.74970 4.81784 4.86782 4.89613 4.91932 4.99629 5.02632 5.05195 5.14158 5.29816 5.55531 5.78638 5.89835 6.19223 6.21114 6.27924 6.63351 6.96138 7.08100 7.21839 8.73735 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.040352 B = 0.002776 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.734062 B =10082.260663 C =10484.918211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.048 3.952 3 O -0.368 6.368 4 C 0.053 3.947 5 H 0.122 0.878 6 C -0.136 4.136 7 C -0.193 4.193 8 H 0.151 0.849 9 C 0.553 3.447 10 O -0.548 6.548 11 N -0.620 5.620 12 C 0.263 3.737 13 C -0.294 4.294 14 C 0.057 3.943 15 N -0.344 5.344 16 C 0.272 3.728 17 C -0.549 4.549 18 H 0.052 0.948 19 C 0.018 3.982 20 N -0.920 5.920 21 Si 0.972 3.028 22 H -0.273 1.273 23 H -0.273 1.273 24 H -0.269 1.269 25 N -0.345 5.345 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.091 0.909 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.132 0.868 32 H 0.111 0.889 33 H 0.425 0.575 34 H 0.168 0.832 35 H 0.202 0.798 36 H 0.021 0.979 37 H 0.059 0.941 38 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.039 -10.552 -12.098 24.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.028 4.028 3 O -0.287 6.287 4 C -0.006 4.006 5 H 0.139 0.861 6 C -0.173 4.173 7 C -0.215 4.215 8 H 0.169 0.831 9 C 0.341 3.659 10 O -0.424 6.424 11 N -0.269 5.269 12 C 0.009 3.991 13 C -0.325 4.325 14 C -0.092 4.092 15 N -0.126 5.126 16 C 0.153 3.847 17 C -0.587 4.587 18 H 0.070 0.930 19 C -0.183 4.183 20 N -0.559 5.559 21 Si 0.796 3.204 22 H -0.198 1.198 23 H -0.198 1.198 24 H -0.194 1.194 25 N -0.176 5.176 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.109 0.891 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.151 0.849 32 H 0.129 0.871 33 H 0.263 0.737 34 H 0.186 0.814 35 H 0.219 0.781 36 H 0.039 0.961 37 H 0.077 0.923 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -18.567 -9.836 -11.532 23.968 hybrid contribution 0.578 0.322 -0.056 0.664 sum -17.989 -9.514 -11.588 23.418 Atomic orbital electron populations 1.21775 0.92363 1.03590 1.02908 1.22799 0.96507 0.82252 1.01221 1.87797 1.18254 1.28687 1.93995 1.22623 0.82248 0.94149 1.01536 0.86085 1.23579 1.03396 1.01092 0.89232 1.22573 0.94866 1.06324 0.97693 0.83096 1.20221 0.85807 0.82657 0.77222 1.90606 1.65167 1.26286 1.60390 1.42545 1.18431 1.14448 1.51455 1.19487 0.89350 0.93229 0.97082 1.21715 0.97857 0.99923 1.12985 1.23190 1.00410 0.87007 0.98597 1.48865 1.16464 1.06875 1.40363 1.19350 0.82985 0.92782 0.89537 1.21363 1.21901 1.11810 1.03590 0.92954 1.25758 0.95896 1.00598 0.96025 1.69988 1.28786 1.40281 1.16820 0.85393 0.78031 0.78435 0.78533 1.19846 1.19780 1.19426 1.77260 0.98731 1.21514 1.20129 0.92354 0.91738 0.89064 0.91762 0.92899 0.84945 0.87105 0.73698 0.81429 0.78084 0.96068 0.92272 0.91809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 10.28 71.98 0.74 -0.81 16 2 C 0.05 0.66 6.53 71.98 0.47 1.13 16 3 O -0.37 -6.76 10.60 -148.98 -1.58 -8.34 16 4 C 0.05 0.98 5.96 30.59 0.18 1.16 16 5 H 0.12 2.34 7.45 -2.39 -0.02 2.32 16 6 C -0.14 -2.09 10.18 30.59 0.31 -1.78 16 7 C -0.19 -3.70 6.14 -11.54 -0.07 -3.77 16 8 H 0.15 2.34 8.14 -2.39 -0.02 2.32 16 9 C 0.55 15.28 7.58 87.66 0.66 15.95 16 10 O -0.55 -18.31 13.39 -3.06 -0.04 -18.35 16 11 N -0.62 -18.93 5.45 -307.52 -1.68 -20.61 16 12 C 0.26 10.59 8.11 133.32 1.08 11.67 16 13 C -0.29 -11.53 9.60 22.10 0.21 -11.32 16 14 C 0.06 2.24 11.44 83.52 0.96 3.20 16 15 N -0.34 -16.30 3.67 -351.85 -1.29 -17.59 16 16 C 0.27 14.21 6.26 85.64 0.54 14.74 16 17 C -0.55 -31.08 9.24 25.60 0.24 -30.84 16 18 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 19 C 0.02 0.98 5.46 84.65 0.46 1.44 16 20 N -0.92 -52.26 13.29 21.45 0.28 -51.98 16 21 Si 0.97 43.64 29.54 68.60 2.03 45.66 16 22 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 23 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 24 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 25 N -0.35 -16.24 12.42 -54.45 -0.68 -16.92 16 26 H 0.06 0.67 8.14 -2.39 -0.02 0.66 16 27 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.13 1.55 8.14 -2.38 -0.02 1.53 16 32 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.43 10.55 8.82 -92.71 -0.82 9.73 16 34 H 0.17 6.29 5.92 -2.91 -0.02 6.27 16 35 H 0.20 6.26 8.06 -2.91 -0.02 6.24 16 36 H 0.02 1.19 8.14 -2.38 -0.02 1.17 16 37 H 0.06 3.01 8.07 -2.39 -0.02 2.99 16 38 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -69.51 334.16 3.09 -66.42 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: 0.26 Total: 20.92 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: 5.78 Total: 0.77 kcal Atomic # 7 Polarization: -103.73 SS G_CDS: -3.36 Total: -107.09 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: -1.62 Total: -26.69 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Total: -69.51 3.09 -66.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172091219.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.309 kcal (2) G-P(sol) polarization free energy of solvation -69.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds