Wall clock time and date at job start Tue Mar 31 2020 00:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42896 * 109.47055 * 2 1 4 4 C 1.42895 * 113.99870 * 179.97438 * 3 2 1 5 5 H 1.09004 * 115.56601 * 4.31145 * 4 3 2 6 6 C 1.53000 * 117.50204 * 218.62270 * 4 3 2 7 7 C 1.52997 * 60.00347 * 252.51263 * 6 4 3 8 8 H 1.08997 * 117.50044 * 107.48590 * 7 6 4 9 9 C 1.50702 * 117.49714 * 252.51395 * 7 6 4 10 10 O 1.21290 * 120.00439 * 68.61604 * 9 7 6 11 11 N 1.34778 * 119.99457 * 248.61531 * 9 7 6 12 12 C 1.40159 * 119.99590 * 179.97438 * 11 9 7 13 13 C 1.40408 * 125.97624 * 359.71371 * 12 11 9 14 14 C 1.35241 * 107.86786 * 179.82861 * 13 12 11 15 15 N 1.34968 * 107.86077 * 0.43234 * 14 13 12 16 16 C 1.46501 * 125.97604 * 179.68830 * 15 14 13 17 17 C 1.50703 * 109.46750 * 125.01911 * 16 15 14 18 18 H 1.07996 * 120.00225 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99937 * 180.02562 * 17 16 15 20 20 N 1.31518 * 119.99733 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00310 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46774 * 89.99895 * 21 19 17 23 23 H 1.48501 * 109.47317 * 210.00132 * 21 19 17 24 24 H 1.48496 * 109.46917 * 330.00593 * 21 19 17 25 25 N 1.31219 * 125.97232 * 180.02562 * 12 11 9 26 26 H 1.08999 * 109.47356 * 59.99973 * 1 2 3 27 27 H 1.09003 * 109.47362 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46961 * 299.99851 * 1 2 3 29 29 H 1.08992 * 109.46666 * 239.99790 * 2 1 3 30 30 H 1.09001 * 109.46616 * 120.00043 * 2 1 3 31 31 H 1.09002 * 117.49696 * 0.02562 * 6 4 3 32 32 H 1.09002 * 117.50343 * 145.02367 * 6 4 3 33 33 H 0.97000 * 120.00163 * 0.02562 * 11 9 7 34 34 H 1.07995 * 126.06621 * 359.97438 * 13 12 11 35 35 H 1.07993 * 126.07038 * 180.16389 * 14 13 12 36 36 H 1.08994 * 109.47430 * 245.01516 * 16 15 14 37 37 H 1.08998 * 109.46920 * 5.02298 * 16 15 14 38 38 H 0.96998 * 120.00148 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.9772 0.5197 -0.0730 6 6 4.0511 2.5729 0.8478 7 6 4.0426 2.6875 -0.6779 8 1 3.3584 3.4088 -1.1246 9 6 5.3543 2.5036 -1.3968 10 8 5.8846 1.4131 -1.4217 11 7 5.9380 3.5512 -2.0119 12 6 7.1582 3.3803 -2.6801 13 6 7.8819 2.1815 -2.7823 14 6 8.9970 2.4303 -3.5059 15 7 8.9889 3.7373 -3.8426 16 6 10.0163 4.4313 -4.6230 17 6 9.3756 5.1084 -5.8071 18 1 8.3098 5.0300 -5.9625 19 6 10.1502 5.8281 -6.6921 20 7 11.4483 5.9231 -6.5031 21 14 9.3563 6.6668 -8.1603 22 1 8.9486 8.0440 -7.7827 23 1 10.3286 6.7280 -9.2810 24 1 8.1603 5.8953 -8.5840 25 7 7.8269 4.3142 -3.3145 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8932 -0.5138 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 3.3725 3.2188 1.4050 32 1 5.0054 2.3648 1.3315 33 1 5.5141 4.4234 -1.9917 34 1 7.5972 1.2290 -2.3602 35 1 9.7607 1.7118 -3.7644 36 1 10.5047 5.1785 -3.9977 37 1 10.7555 3.7106 -4.9727 38 1 11.9933 6.4290 -7.1259 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172091224.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:03 Heat of formation + Delta-G solvation = 27.711109 kcal Electronic energy + Delta-G solvation = -20549.428426 eV Core-core repulsion = 17202.159907 eV Total energy + Delta-G solvation = -3347.268520 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.76907 -39.75422 -38.30944 -35.42919 -34.70437 -33.34688 -31.20856 -30.89702 -29.33726 -26.90865 -24.91431 -23.22169 -22.82887 -22.38908 -21.18347 -20.05075 -19.50659 -17.79611 -16.87086 -16.60205 -16.19178 -15.86343 -15.63908 -15.15038 -14.94688 -14.43537 -14.10490 -13.83948 -13.15228 -13.00720 -12.82211 -12.66867 -12.38396 -12.35382 -12.24763 -11.80207 -11.53762 -11.29053 -11.05534 -10.90839 -10.81515 -10.44933 -10.26626 -10.03343 -9.67846 -9.50903 -9.45861 -8.64200 -8.15087 -7.49121 -6.25237 -4.30306 2.17146 2.59326 2.88181 3.21018 3.23522 3.29219 3.34689 3.48850 3.78129 3.91149 4.31529 4.45139 4.55132 4.70111 4.74881 4.82621 4.95149 5.05551 5.09954 5.18245 5.40118 5.49990 5.54056 5.56058 5.68590 5.77325 5.80325 6.25287 6.46861 6.59029 6.84517 6.88109 7.04043 7.38908 7.55142 7.70156 7.87750 8.02868 8.22545 8.61749 8.79168 9.35345 10.83514 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.031788 B = 0.002841 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.614900 B = 9853.309404 C =10274.013334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.357 6.357 4 C 0.055 3.945 5 H 0.127 0.873 6 C -0.153 4.153 7 C -0.190 4.190 8 H 0.133 0.867 9 C 0.551 3.449 10 O -0.521 6.521 11 N -0.624 5.624 12 C 0.256 3.744 13 C -0.288 4.288 14 C 0.051 3.949 15 N -0.318 5.318 16 C 0.258 3.742 17 C -0.529 4.529 18 H 0.069 0.931 19 C 0.062 3.938 20 N -0.895 5.895 21 Si 0.909 3.091 22 H -0.277 1.277 23 H -0.284 1.284 24 H -0.272 1.272 25 N -0.303 5.303 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.413 0.587 34 H 0.159 0.841 35 H 0.168 0.832 36 H 0.045 0.955 37 H 0.057 0.943 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.276 -9.605 13.781 23.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.275 6.275 4 C -0.003 4.003 5 H 0.144 0.856 6 C -0.191 4.191 7 C -0.212 4.212 8 H 0.151 0.849 9 C 0.337 3.663 10 O -0.396 6.396 11 N -0.271 5.271 12 C 0.003 3.997 13 C -0.319 4.319 14 C -0.099 4.099 15 N -0.100 5.100 16 C 0.140 3.860 17 C -0.567 4.567 18 H 0.087 0.913 19 C -0.141 4.141 20 N -0.533 5.533 21 Si 0.736 3.264 22 H -0.203 1.203 23 H -0.210 1.210 24 H -0.197 1.197 25 N -0.134 5.134 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.130 0.870 32 H 0.128 0.872 33 H 0.248 0.752 34 H 0.177 0.823 35 H 0.186 0.814 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.733 -8.867 13.271 22.412 hybrid contribution -0.322 0.091 -0.764 0.834 sum -16.056 -8.776 12.507 22.164 Atomic orbital electron populations 1.21761 0.93519 1.02450 1.03196 1.22584 0.95534 0.83135 1.00708 1.87808 1.18510 1.27251 1.93942 1.22614 0.82025 0.94351 1.01357 0.85553 1.23478 1.03176 1.01907 0.90542 1.22591 0.96836 1.05032 0.96727 0.84934 1.19509 0.85051 0.83583 0.78160 1.90631 1.64133 1.25226 1.59561 1.42367 1.19753 1.13154 1.51840 1.19116 0.88551 0.93861 0.98208 1.21510 0.97679 0.99714 1.12996 1.22568 1.00054 0.87801 0.99445 1.49101 1.16131 1.06214 1.38570 1.19758 0.83192 0.93146 0.89858 1.21255 0.95199 1.32447 1.07799 0.91309 1.24953 0.94816 0.95991 0.98356 1.69918 1.04526 1.41221 1.37683 0.86315 0.79037 0.79829 0.81251 1.20320 1.20971 1.19716 1.77338 0.97823 1.20373 1.17891 0.91736 0.90878 0.91825 0.92754 0.92881 0.86961 0.87216 0.75194 0.82328 0.81442 0.93680 0.92491 0.92314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 10.28 37.16 0.38 -0.56 16 2 C 0.06 0.44 6.53 37.16 0.24 0.68 16 3 O -0.36 -3.62 10.60 -35.23 -0.37 -4.00 16 4 C 0.06 0.56 5.96 -26.73 -0.16 0.40 16 5 H 0.13 1.29 7.45 -51.93 -0.39 0.91 16 6 C -0.15 -1.34 10.18 -26.73 -0.27 -1.62 16 7 C -0.19 -2.01 6.14 -91.77 -0.56 -2.57 16 8 H 0.13 1.21 8.14 -51.93 -0.42 0.78 16 9 C 0.55 7.95 7.58 -10.98 -0.08 7.87 16 10 O -0.52 -8.93 13.39 5.55 0.07 -8.86 16 11 N -0.62 -9.79 5.45 -11.13 -0.06 -9.85 16 12 C 0.26 5.17 8.11 -154.39 -1.25 3.92 16 13 C -0.29 -5.73 9.61 -39.83 -0.38 -6.11 16 14 C 0.05 1.03 11.44 -17.24 -0.20 0.83 16 15 N -0.32 -7.44 3.67 -62.56 -0.23 -7.67 16 16 C 0.26 6.57 6.26 -5.19 -0.03 6.54 16 17 C -0.53 -14.75 9.24 -34.44 -0.32 -15.07 16 18 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 20 N -0.90 -25.34 13.29 55.43 0.74 -24.60 16 21 Si 0.91 21.41 29.54 -169.99 -5.02 16.39 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 25 N -0.30 -7.03 12.42 31.44 0.39 -6.64 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.41 5.31 8.82 -40.82 -0.36 4.95 16 34 H 0.16 3.04 5.92 -52.49 -0.31 2.73 16 35 H 0.17 2.73 8.06 -52.49 -0.42 2.30 16 36 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 38 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 334.16 15.07 5.04 5.04 Total: -1.00 -32.52 334.16 -7.43 -39.94 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -5.25 Total: 4.32 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -2.73 Total: -4.08 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: 0.84 Total: -48.76 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: -0.30 Total: -12.85 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.52 -7.43 -39.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172091224.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.656 kcal (2) G-P(sol) polarization free energy of solvation -32.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds