Wall clock time and date at job start Tue Mar 31 2020 00:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42896 * 109.47055 * 2 1 4 4 C 1.42895 * 113.99870 * 179.97438 * 3 2 1 5 5 H 1.09004 * 115.56601 * 4.31145 * 4 3 2 6 6 C 1.53000 * 117.50204 * 218.62270 * 4 3 2 7 7 C 1.52997 * 60.00347 * 252.51263 * 6 4 3 8 8 H 1.08997 * 117.50044 * 107.48590 * 7 6 4 9 9 C 1.50702 * 117.49714 * 252.51395 * 7 6 4 10 10 O 1.21290 * 120.00439 * 68.61604 * 9 7 6 11 11 N 1.34778 * 119.99457 * 248.61531 * 9 7 6 12 12 C 1.40159 * 119.99590 * 179.97438 * 11 9 7 13 13 C 1.40408 * 125.97624 * 359.71371 * 12 11 9 14 14 C 1.35241 * 107.86786 * 179.82861 * 13 12 11 15 15 N 1.34968 * 107.86077 * 0.43234 * 14 13 12 16 16 C 1.46501 * 125.97604 * 179.68830 * 15 14 13 17 17 C 1.50703 * 109.46750 * 125.01911 * 16 15 14 18 18 H 1.07996 * 120.00225 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99937 * 180.02562 * 17 16 15 20 20 N 1.31518 * 119.99733 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00310 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46774 * 89.99895 * 21 19 17 23 23 H 1.48501 * 109.47317 * 210.00132 * 21 19 17 24 24 H 1.48496 * 109.46917 * 330.00593 * 21 19 17 25 25 N 1.31219 * 125.97232 * 180.02562 * 12 11 9 26 26 H 1.08999 * 109.47356 * 59.99973 * 1 2 3 27 27 H 1.09003 * 109.47362 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46961 * 299.99851 * 1 2 3 29 29 H 1.08992 * 109.46666 * 239.99790 * 2 1 3 30 30 H 1.09001 * 109.46616 * 120.00043 * 2 1 3 31 31 H 1.09002 * 117.49696 * 0.02562 * 6 4 3 32 32 H 1.09002 * 117.50343 * 145.02367 * 6 4 3 33 33 H 0.97000 * 120.00163 * 0.02562 * 11 9 7 34 34 H 1.07995 * 126.06621 * 359.97438 * 13 12 11 35 35 H 1.07993 * 126.07038 * 180.16389 * 14 13 12 36 36 H 1.08994 * 109.47430 * 245.01516 * 16 15 14 37 37 H 1.08998 * 109.46920 * 5.02298 * 16 15 14 38 38 H 0.96998 * 120.00148 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.9772 0.5197 -0.0730 6 6 4.0511 2.5729 0.8478 7 6 4.0426 2.6875 -0.6779 8 1 3.3584 3.4088 -1.1246 9 6 5.3543 2.5036 -1.3968 10 8 5.8846 1.4131 -1.4217 11 7 5.9380 3.5512 -2.0119 12 6 7.1582 3.3803 -2.6801 13 6 7.8819 2.1815 -2.7823 14 6 8.9970 2.4303 -3.5059 15 7 8.9889 3.7373 -3.8426 16 6 10.0163 4.4313 -4.6230 17 6 9.3756 5.1084 -5.8071 18 1 8.3098 5.0300 -5.9625 19 6 10.1502 5.8281 -6.6921 20 7 11.4483 5.9231 -6.5031 21 14 9.3563 6.6668 -8.1603 22 1 8.9486 8.0440 -7.7827 23 1 10.3286 6.7280 -9.2810 24 1 8.1603 5.8953 -8.5840 25 7 7.8269 4.3142 -3.3145 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8932 -0.5138 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 3.3725 3.2188 1.4050 32 1 5.0054 2.3648 1.3315 33 1 5.5141 4.4234 -1.9917 34 1 7.5972 1.2290 -2.3602 35 1 9.7607 1.7118 -3.7644 36 1 10.5047 5.1785 -3.9977 37 1 10.7555 3.7106 -4.9727 38 1 11.9933 6.4290 -7.1259 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172091224.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:02 Heat of formation + Delta-G solvation = 6.770664 kcal Electronic energy + Delta-G solvation = -20550.336472 eV Core-core repulsion = 17202.159907 eV Total energy + Delta-G solvation = -3348.176566 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.26231 -40.96993 -39.19392 -36.42574 -35.98949 -35.27646 -32.81030 -31.68870 -30.98158 -28.74802 -26.22447 -24.58814 -23.78439 -23.15684 -22.55808 -21.58479 -20.81054 -18.73120 -18.68654 -18.26754 -17.34736 -17.06203 -16.52362 -16.47605 -16.26980 -15.96999 -15.47490 -15.20090 -14.55664 -14.26469 -13.84992 -13.78504 -13.73010 -13.54926 -13.35841 -13.03665 -12.93561 -12.73936 -12.30918 -12.16081 -12.08468 -11.89519 -11.67787 -11.59082 -11.40778 -10.93992 -10.73204 -10.23152 -9.78580 -9.15247 -8.34288 -6.48318 0.86292 1.26396 1.37318 1.37974 1.40475 1.50329 2.12078 2.18783 2.35038 2.61497 2.81413 2.97552 3.53401 3.69739 3.90270 4.02675 4.06490 4.20572 4.25830 4.33605 4.48064 4.53420 4.74994 4.81890 4.86801 4.89597 4.91884 4.99735 5.02745 5.04913 5.14196 5.29490 5.55427 5.78463 5.89830 6.19291 6.21108 6.27871 6.63333 6.96161 7.08105 7.21603 8.73437 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.031788 B = 0.002841 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.614900 B = 9853.309404 C =10274.013334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.048 3.952 3 O -0.369 6.369 4 C 0.052 3.948 5 H 0.122 0.878 6 C -0.133 4.133 7 C -0.194 4.194 8 H 0.150 0.850 9 C 0.553 3.447 10 O -0.548 6.548 11 N -0.620 5.620 12 C 0.263 3.737 13 C -0.294 4.294 14 C 0.057 3.943 15 N -0.344 5.344 16 C 0.272 3.728 17 C -0.548 4.548 18 H 0.051 0.949 19 C 0.018 3.982 20 N -0.920 5.920 21 Si 0.972 3.028 22 H -0.272 1.272 23 H -0.271 1.271 24 H -0.273 1.273 25 N -0.345 5.345 26 H 0.057 0.943 27 H 0.091 0.909 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.133 0.867 32 H 0.112 0.888 33 H 0.425 0.575 34 H 0.168 0.832 35 H 0.202 0.798 36 H 0.022 0.978 37 H 0.060 0.940 38 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.766 -9.982 14.248 24.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.028 4.028 3 O -0.288 6.288 4 C -0.007 4.007 5 H 0.139 0.861 6 C -0.171 4.171 7 C -0.216 4.216 8 H 0.168 0.832 9 C 0.341 3.659 10 O -0.425 6.425 11 N -0.269 5.269 12 C 0.009 3.991 13 C -0.325 4.325 14 C -0.092 4.092 15 N -0.126 5.126 16 C 0.153 3.847 17 C -0.586 4.586 18 H 0.070 0.930 19 C -0.182 4.182 20 N -0.559 5.559 21 Si 0.796 3.204 22 H -0.198 1.198 23 H -0.196 1.196 24 H -0.198 1.198 25 N -0.176 5.176 26 H 0.076 0.924 27 H 0.109 0.891 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.151 0.849 32 H 0.131 0.869 33 H 0.263 0.737 34 H 0.186 0.814 35 H 0.219 0.781 36 H 0.040 0.960 37 H 0.077 0.923 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -17.249 -9.248 13.762 23.926 hybrid contribution 0.072 0.103 -0.809 0.819 sum -17.178 -9.145 12.953 23.377 Atomic orbital electron populations 1.21777 0.92382 1.03586 1.02903 1.22795 0.96499 0.82260 1.01214 1.87793 1.18292 1.28676 1.93998 1.22632 0.82240 0.94180 1.01623 0.86094 1.23580 1.03417 1.00958 0.89112 1.22575 0.94867 1.06336 0.97787 0.83210 1.20223 0.85796 0.82648 0.77235 1.90606 1.65171 1.26249 1.60425 1.42547 1.18398 1.14455 1.51482 1.19487 0.89426 0.93404 0.96832 1.21717 0.97693 0.99978 1.13105 1.23190 1.00761 0.87062 0.98190 1.48866 1.16441 1.07264 1.39995 1.19354 0.83637 0.92691 0.88987 1.21391 0.94528 1.33549 1.09146 0.93032 1.25748 0.95326 0.96306 1.00859 1.69992 1.05543 1.41627 1.38697 0.85339 0.78221 0.78685 0.78122 1.19771 1.19623 1.19781 1.77257 0.98645 1.21909 1.19824 0.92411 0.89071 0.91688 0.92978 0.91690 0.84931 0.86948 0.73698 0.81429 0.78080 0.95989 0.92258 0.91804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 10.28 71.98 0.74 -0.85 16 2 C 0.05 0.67 6.53 71.98 0.47 1.14 16 3 O -0.37 -6.83 10.60 -148.98 -1.58 -8.41 16 4 C 0.05 0.96 5.96 30.60 0.18 1.14 16 5 H 0.12 2.34 7.45 -2.38 -0.02 2.32 16 6 C -0.13 -2.00 10.18 30.59 0.31 -1.69 16 7 C -0.19 -3.72 6.14 -11.54 -0.07 -3.79 16 8 H 0.15 2.37 8.14 -2.39 -0.02 2.35 16 9 C 0.55 15.30 7.58 87.66 0.66 15.96 16 10 O -0.55 -18.32 13.39 -3.06 -0.04 -18.36 16 11 N -0.62 -18.94 5.45 -307.51 -1.68 -20.62 16 12 C 0.26 10.59 8.11 133.32 1.08 11.67 16 13 C -0.29 -11.54 9.61 22.11 0.21 -11.32 16 14 C 0.06 2.24 11.44 83.52 0.96 3.20 16 15 N -0.34 -16.30 3.67 -351.85 -1.29 -17.59 16 16 C 0.27 14.19 6.26 85.63 0.54 14.73 16 17 C -0.55 -31.11 9.24 25.60 0.24 -30.88 16 18 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 19 C 0.02 1.00 5.46 84.66 0.46 1.46 16 20 N -0.92 -52.22 13.29 21.45 0.28 -51.94 16 21 Si 0.97 43.78 29.54 68.60 2.03 45.80 16 22 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 23 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 24 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 25 N -0.35 -16.24 12.42 -54.45 -0.68 -16.92 16 26 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.06 0.67 8.14 -2.38 -0.02 0.66 16 29 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.43 10.56 8.82 -92.71 -0.82 9.74 16 34 H 0.17 6.29 5.92 -2.91 -0.02 6.27 16 35 H 0.20 6.27 8.06 -2.91 -0.02 6.24 16 36 H 0.02 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.06 3.01 8.07 -2.39 -0.02 2.99 16 38 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -69.68 334.16 3.09 -66.60 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: 0.26 Total: 20.66 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: 5.78 Total: 0.77 kcal Atomic # 7 Polarization: -103.71 SS G_CDS: -3.36 Total: -107.07 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -1.62 Total: -26.77 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -69.68 3.09 -66.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172091224.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.366 kcal (2) G-P(sol) polarization free energy of solvation -69.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds