Wall clock time and date at job start Tue Mar 31 2020 00:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.20751 * 119.99778 * 2 1 4 4 C 1.50701 * 119.99854 * 179.97438 * 2 1 3 5 5 C 1.53000 * 109.47052 * 180.02562 * 4 2 1 6 6 C 1.52996 * 109.47389 * 180.02562 * 5 4 2 7 7 C 1.50696 * 109.47220 * 180.02562 * 6 5 4 8 8 O 1.21290 * 120.00012 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99736 * 179.97438 * 7 6 5 10 10 C 1.40159 * 119.99983 * 179.97438 * 9 7 6 11 11 C 1.40409 * 125.97033 * 0.02562 * 10 9 7 12 12 C 1.35241 * 107.86602 * 179.73843 * 11 10 9 13 13 N 1.34966 * 107.86079 * 0.39163 * 12 11 10 14 14 C 1.46500 * 125.97782 * 179.87198 * 13 12 11 15 15 C 1.50706 * 109.47299 * 124.71059 * 14 13 12 16 16 H 1.07998 * 119.99503 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00434 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99826 * 359.72891 * 17 15 14 19 19 Si 1.86800 * 120.00406 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47364 * 179.72558 * 19 17 15 21 21 H 1.48508 * 109.46883 * 299.72681 * 19 17 15 22 22 H 1.48497 * 109.46870 * 59.72491 * 19 17 15 23 23 N 1.31219 * 125.97718 * 179.97438 * 10 9 7 24 24 H 1.08994 * 109.47752 * 270.00216 * 1 2 3 25 25 H 1.09005 * 109.47211 * 30.00611 * 1 2 3 26 26 H 1.09009 * 109.47123 * 150.00021 * 1 2 3 27 27 H 1.09001 * 109.46978 * 60.00360 * 4 2 1 28 28 H 1.08996 * 109.47154 * 300.00819 * 4 2 1 29 29 H 1.09002 * 109.46562 * 60.00125 * 5 4 2 30 30 H 1.09003 * 109.47100 * 300.00688 * 5 4 2 31 31 H 1.09001 * 109.46879 * 60.00047 * 6 5 4 32 32 H 1.09006 * 109.47056 * 300.00623 * 6 5 4 33 33 H 0.97003 * 120.00166 * 0.02562 * 9 7 6 34 34 H 1.08002 * 126.06850 * 0.02562 * 11 10 9 35 35 H 1.08003 * 126.07024 * 180.26845 * 12 11 10 36 36 H 1.09004 * 109.47078 * 4.71821 * 14 13 12 37 37 H 1.08993 * 109.47364 * 244.71592 * 14 13 12 38 38 H 0.97000 * 120.00236 * 0.27947 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1107 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 6 3.7647 -1.0256 0.0011 6 6 4.5297 -2.3505 0.0011 7 6 6.0113 -2.0751 0.0022 8 8 6.4156 -0.9316 0.0035 9 7 6.8871 -3.0996 0.0029 10 6 8.2651 -2.8435 0.0034 11 6 8.8683 -1.5756 0.0038 12 6 10.2089 -1.7539 0.0101 13 7 10.4499 -3.0819 0.0048 14 6 11.7700 -3.7170 0.0061 15 6 11.8683 -4.6693 1.1701 16 1 11.0309 -4.7896 1.8414 17 6 13.0271 -5.3868 1.3780 18 7 14.0449 -5.2442 0.5574 19 14 13.1486 -6.5676 2.8203 20 1 14.4846 -7.2158 2.8182 21 1 12.9634 -5.8192 4.0896 22 1 12.0942 -7.6063 2.6998 23 7 9.2170 -3.7467 0.0046 24 1 -0.3634 0.0000 1.0276 25 1 -0.3634 0.8900 -0.5139 26 1 -0.3634 -0.8901 -0.5139 27 1 1.9972 -1.8770 -0.8892 28 1 1.9970 -1.8763 0.8907 29 1 4.0276 -0.4538 0.8911 30 1 4.0284 -0.4541 -0.8889 31 1 4.2667 -2.9219 -0.8892 32 1 4.2661 -2.9224 0.8908 33 1 6.5638 -4.0141 0.0023 34 1 8.3532 -0.6264 0.0042 35 1 10.9543 -0.9724 0.0161 36 1 12.5412 -2.9520 0.0966 37 1 11.9102 -4.2658 -0.9251 38 1 13.9818 -4.6313 -0.1918 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186658343.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:29 Heat of formation + Delta-G solvation = -9.825816 kcal Electronic energy + Delta-G solvation = -20357.229495 eV Core-core repulsion = 17008.333252 eV Total energy + Delta-G solvation = -3348.896243 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.76243 -39.87682 -39.24676 -34.98866 -34.47640 -33.66095 -31.29990 -30.77504 -29.38962 -28.38754 -26.19139 -23.62795 -22.70877 -21.22486 -20.27739 -19.97278 -19.49428 -17.19230 -17.08376 -16.52746 -16.46767 -16.00899 -15.47891 -15.18896 -15.06021 -14.39025 -13.89047 -13.84005 -13.76036 -13.18427 -12.93702 -12.71913 -12.44232 -12.31702 -12.22797 -12.07941 -11.83071 -11.72235 -11.16686 -11.05923 -10.81963 -10.45211 -10.16933 -10.08841 -9.96292 -9.58415 -9.00728 -8.58981 -8.20683 -7.52578 -6.58879 -4.32918 1.63597 2.29429 2.71718 2.86147 3.37032 3.38640 3.57373 3.63002 3.66080 3.85045 4.39533 4.42204 4.62783 4.64582 4.72158 4.90589 4.92853 5.10217 5.14836 5.17914 5.26727 5.28715 5.48901 5.62064 5.71803 5.83059 6.08626 6.20816 6.41588 6.51483 6.60206 6.74550 7.18773 7.35445 7.47977 7.70418 7.82890 8.23722 8.33405 8.53945 8.61585 9.35287 10.78623 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.041584 B = 0.002582 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.181110 B =10839.931699 C =11254.829507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.350 3.650 3 O -0.453 6.453 4 C -0.173 4.173 5 C -0.099 4.099 6 C -0.135 4.135 7 C 0.516 3.484 8 O -0.515 6.515 9 N -0.633 5.633 10 C 0.258 3.742 11 C -0.285 4.285 12 C 0.050 3.950 13 N -0.318 5.318 14 C 0.249 3.751 15 C -0.608 4.608 16 H 0.063 0.937 17 C 0.022 3.978 18 N -0.904 5.904 19 Si 1.077 2.923 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.285 1.285 23 N -0.303 5.303 24 H 0.094 0.906 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.411 0.589 34 H 0.161 0.839 35 H 0.168 0.832 36 H 0.046 0.954 37 H 0.035 0.965 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.967 5.265 -1.752 25.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C 0.225 3.775 3 O -0.326 6.326 4 C -0.211 4.211 5 C -0.137 4.137 6 C -0.175 4.175 7 C 0.302 3.698 8 O -0.389 6.389 9 N -0.281 5.281 10 C 0.004 3.996 11 C -0.317 4.317 12 C -0.100 4.100 13 N -0.100 5.100 14 C 0.131 3.869 15 C -0.646 4.646 16 H 0.081 0.919 17 C -0.183 4.183 18 N -0.540 5.540 19 Si 0.904 3.096 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.211 1.211 23 N -0.134 5.134 24 H 0.113 0.887 25 H 0.102 0.898 26 H 0.103 0.897 27 H 0.118 0.882 28 H 0.118 0.882 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.246 0.754 34 H 0.179 0.821 35 H 0.185 0.815 36 H 0.064 0.936 37 H 0.052 0.948 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -22.957 4.287 -1.013 23.376 hybrid contribution -1.368 1.262 -0.773 2.015 sum -24.324 5.549 -1.787 25.013 Atomic orbital electron populations 1.22309 0.94605 1.04726 1.04626 1.24639 0.91888 0.90434 0.70524 1.90460 1.71917 1.35195 1.35040 1.22183 0.96511 0.97602 1.04789 1.21172 0.91573 0.95774 1.05133 1.21648 0.90679 1.00359 1.04831 1.20712 0.88372 0.84664 0.76074 1.90664 1.79551 1.21277 1.47406 1.42569 1.02243 1.10452 1.72832 1.19157 0.84179 0.93021 1.03214 1.21551 0.92128 0.98210 1.19764 1.22572 0.97342 0.87510 1.02529 1.48783 1.05723 1.03311 1.52138 1.19761 0.73725 0.94171 0.99250 1.22097 1.03421 1.26652 1.12414 0.91871 1.25936 0.91658 0.98503 1.02154 1.70851 1.32047 1.36057 1.15027 0.83413 0.76247 0.75627 0.74293 1.20514 1.21237 1.21145 1.77339 0.88775 1.19280 1.27989 0.88728 0.89820 0.89693 0.88221 0.88188 0.90367 0.90396 0.88445 0.88415 0.75398 0.82142 0.81499 0.93618 0.94773 0.92277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -0.81 10.25 36.01 0.37 -0.44 16 2 C 0.35 2.56 7.27 -29.03 -0.21 2.35 16 3 O -0.45 -5.54 16.72 6.01 0.10 -5.44 16 4 C -0.17 -0.91 5.62 -27.88 -0.16 -1.07 16 5 C -0.10 -0.88 3.79 -26.73 -0.10 -0.99 16 6 C -0.13 -1.07 5.70 -27.89 -0.16 -1.23 16 7 C 0.52 7.07 7.80 -10.99 -0.09 6.98 16 8 O -0.52 -9.05 13.11 5.55 0.07 -8.97 16 9 N -0.63 -9.54 5.45 -11.13 -0.06 -9.60 16 10 C 0.26 5.22 8.11 -154.39 -1.25 3.97 16 11 C -0.29 -5.79 9.61 -39.83 -0.38 -6.18 16 12 C 0.05 1.03 11.44 -17.24 -0.20 0.83 16 13 N -0.32 -7.54 3.67 -62.56 -0.23 -7.77 16 14 C 0.25 6.37 5.57 -5.19 -0.03 6.34 16 15 C -0.61 -17.19 9.24 -34.44 -0.32 -17.51 16 16 H 0.06 1.87 7.81 -52.49 -0.41 1.45 16 17 C 0.02 0.62 5.46 -17.82 -0.10 0.52 16 18 N -0.90 -26.42 13.65 55.43 0.76 -25.66 16 19 Si 1.08 24.95 29.90 -169.99 -5.08 19.87 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 23 N -0.30 -7.08 12.42 31.44 0.39 -6.69 16 24 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.08 0.15 8.12 -51.92 -0.42 -0.27 16 27 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.08 0.87 8.06 -51.93 -0.42 0.45 16 30 H 0.08 0.86 8.06 -51.93 -0.42 0.44 16 31 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.41 4.86 8.82 -40.82 -0.36 4.50 16 34 H 0.16 3.18 5.92 -52.49 -0.31 2.87 16 35 H 0.17 2.80 8.06 -52.48 -0.42 2.38 16 36 H 0.05 1.13 7.94 -51.93 -0.41 0.72 16 37 H 0.03 0.91 8.00 -51.93 -0.42 0.49 16 38 H 0.27 7.63 7.22 -40.82 -0.29 7.34 16 LS Contribution 332.96 15.07 5.02 5.02 Total: -1.00 -36.55 332.96 -6.87 -43.42 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -5.22 Total: 2.25 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: -2.62 Total: -6.42 kcal Atomic # 7 Polarization: -50.57 SS G_CDS: 0.86 Total: -49.72 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: 0.17 Total: -14.42 kcal Atomic # 14 Polarization: 24.95 SS G_CDS: -5.08 Total: 19.87 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -36.55 -6.87 -43.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186658343.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.594 kcal (2) G-P(sol) polarization free energy of solvation -36.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds