Wall clock time and date at job start Tue Mar 31 2020 00:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.20751 * 119.99778 * 2 1 4 4 C 1.50701 * 119.99854 * 179.97438 * 2 1 3 5 5 C 1.53000 * 109.47052 * 180.02562 * 4 2 1 6 6 C 1.52996 * 109.47389 * 180.02562 * 5 4 2 7 7 C 1.50696 * 109.47220 * 180.02562 * 6 5 4 8 8 O 1.21290 * 120.00012 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99736 * 179.97438 * 7 6 5 10 10 C 1.40159 * 119.99983 * 179.97438 * 9 7 6 11 11 C 1.40409 * 125.97033 * 0.02562 * 10 9 7 12 12 C 1.35241 * 107.86602 * 179.73843 * 11 10 9 13 13 N 1.34966 * 107.86079 * 0.39163 * 12 11 10 14 14 C 1.46500 * 125.97782 * 179.87198 * 13 12 11 15 15 C 1.50706 * 109.47299 * 124.71059 * 14 13 12 16 16 H 1.07998 * 119.99503 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00434 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99826 * 359.72891 * 17 15 14 19 19 Si 1.86800 * 120.00406 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47364 * 179.72558 * 19 17 15 21 21 H 1.48508 * 109.46883 * 299.72681 * 19 17 15 22 22 H 1.48497 * 109.46870 * 59.72491 * 19 17 15 23 23 N 1.31219 * 125.97718 * 179.97438 * 10 9 7 24 24 H 1.08994 * 109.47752 * 270.00216 * 1 2 3 25 25 H 1.09005 * 109.47211 * 30.00611 * 1 2 3 26 26 H 1.09009 * 109.47123 * 150.00021 * 1 2 3 27 27 H 1.09001 * 109.46978 * 60.00360 * 4 2 1 28 28 H 1.08996 * 109.47154 * 300.00819 * 4 2 1 29 29 H 1.09002 * 109.46562 * 60.00125 * 5 4 2 30 30 H 1.09003 * 109.47100 * 300.00688 * 5 4 2 31 31 H 1.09001 * 109.46879 * 60.00047 * 6 5 4 32 32 H 1.09006 * 109.47056 * 300.00623 * 6 5 4 33 33 H 0.97003 * 120.00166 * 0.02562 * 9 7 6 34 34 H 1.08002 * 126.06850 * 0.02562 * 11 10 9 35 35 H 1.08003 * 126.07024 * 180.26845 * 12 11 10 36 36 H 1.09004 * 109.47078 * 4.71821 * 14 13 12 37 37 H 1.08993 * 109.47364 * 244.71592 * 14 13 12 38 38 H 0.97000 * 120.00236 * 0.27947 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1107 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 6 3.7647 -1.0256 0.0011 6 6 4.5297 -2.3505 0.0011 7 6 6.0113 -2.0751 0.0022 8 8 6.4156 -0.9316 0.0035 9 7 6.8871 -3.0996 0.0029 10 6 8.2651 -2.8435 0.0034 11 6 8.8683 -1.5756 0.0038 12 6 10.2089 -1.7539 0.0101 13 7 10.4499 -3.0819 0.0048 14 6 11.7700 -3.7170 0.0061 15 6 11.8683 -4.6693 1.1701 16 1 11.0309 -4.7896 1.8414 17 6 13.0271 -5.3868 1.3780 18 7 14.0449 -5.2442 0.5574 19 14 13.1486 -6.5676 2.8203 20 1 14.4846 -7.2158 2.8182 21 1 12.9634 -5.8192 4.0896 22 1 12.0942 -7.6063 2.6998 23 7 9.2170 -3.7467 0.0046 24 1 -0.3634 0.0000 1.0276 25 1 -0.3634 0.8900 -0.5139 26 1 -0.3634 -0.8901 -0.5139 27 1 1.9972 -1.8770 -0.8892 28 1 1.9970 -1.8763 0.8907 29 1 4.0276 -0.4538 0.8911 30 1 4.0284 -0.4541 -0.8889 31 1 4.2667 -2.9219 -0.8892 32 1 4.2661 -2.9224 0.8908 33 1 6.5638 -4.0141 0.0023 34 1 8.3532 -0.6264 0.0042 35 1 10.9543 -0.9724 0.0161 36 1 12.5412 -2.9520 0.0966 37 1 11.9102 -4.2658 -0.9251 38 1 13.9818 -4.6313 -0.1918 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186658343.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:29 Heat of formation + Delta-G solvation = -34.993645 kcal Electronic energy + Delta-G solvation = -20358.320854 eV Core-core repulsion = 17008.333252 eV Total energy + Delta-G solvation = -3349.987602 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.30515 -40.78922 -40.26900 -36.47971 -35.52056 -35.27982 -32.78195 -31.57992 -31.05149 -29.16185 -27.95506 -25.25765 -24.00509 -22.55049 -21.72006 -20.94685 -20.40411 -19.25071 -18.36329 -17.88853 -17.20339 -16.94730 -16.55079 -16.33617 -15.91899 -15.82953 -15.62061 -15.11078 -14.90415 -14.74503 -14.13241 -13.93771 -13.73023 -13.35934 -13.24564 -13.06541 -12.74661 -12.73494 -12.60825 -12.37486 -12.01339 -11.95656 -11.69239 -11.67718 -11.01890 -10.93142 -10.70519 -10.50931 -9.86054 -9.22626 -8.79156 -6.57485 0.87267 1.11332 1.30855 1.40529 1.50848 1.57304 1.79093 2.17651 2.30242 2.48727 2.99842 3.22778 3.56404 3.86034 4.05930 4.09511 4.12180 4.16656 4.48464 4.54583 4.60627 4.66554 4.75911 4.76013 4.79053 4.80445 4.83469 4.92111 5.10037 5.19339 5.29323 5.40727 5.53582 5.81583 5.91373 6.22202 6.25698 6.39480 6.69099 6.92806 7.13668 7.18515 8.56784 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.041584 B = 0.002582 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.181110 B =10839.931699 C =11254.829507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.347 3.653 3 O -0.518 6.518 4 C -0.166 4.166 5 C -0.099 4.099 6 C -0.119 4.119 7 C 0.511 3.489 8 O -0.558 6.558 9 N -0.625 5.625 10 C 0.266 3.734 11 C -0.295 4.295 12 C 0.054 3.946 13 N -0.344 5.344 14 C 0.259 3.741 15 C -0.621 4.621 16 H 0.045 0.955 17 C -0.020 4.020 18 N -0.922 5.922 19 Si 1.121 2.879 20 H -0.275 1.275 21 H -0.272 1.272 22 H -0.273 1.273 23 N -0.344 5.344 24 H 0.109 0.891 25 H 0.073 0.927 26 H 0.116 0.884 27 H 0.134 0.866 28 H 0.133 0.867 29 H 0.046 0.954 30 H 0.047 0.953 31 H 0.136 0.864 32 H 0.134 0.866 33 H 0.427 0.573 34 H 0.165 0.835 35 H 0.200 0.800 36 H 0.053 0.947 37 H 0.017 0.983 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.549 3.808 -1.125 27.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.227 3.773 3 O -0.396 6.396 4 C -0.203 4.203 5 C -0.137 4.137 6 C -0.158 4.158 7 C 0.300 3.700 8 O -0.434 6.434 9 N -0.276 5.276 10 C 0.011 3.989 11 C -0.326 4.326 12 C -0.095 4.095 13 N -0.126 5.126 14 C 0.140 3.860 15 C -0.659 4.659 16 H 0.064 0.936 17 C -0.220 4.220 18 N -0.558 5.558 19 Si 0.942 3.058 20 H -0.200 1.200 21 H -0.197 1.197 22 H -0.199 1.199 23 N -0.175 5.175 24 H 0.127 0.873 25 H 0.092 0.908 26 H 0.134 0.866 27 H 0.152 0.848 28 H 0.151 0.849 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.154 0.846 32 H 0.152 0.848 33 H 0.266 0.734 34 H 0.183 0.817 35 H 0.216 0.784 36 H 0.070 0.930 37 H 0.035 0.965 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -25.598 2.816 -0.403 25.756 hybrid contribution -0.695 1.811 -1.014 2.189 sum -26.293 4.627 -1.417 26.735 Atomic orbital electron populations 1.22329 0.91842 1.05798 1.05807 1.25418 0.93651 0.90295 0.67977 1.90458 1.73344 1.37398 1.38374 1.22236 0.93034 0.97088 1.07903 1.21108 0.94723 0.95670 1.02210 1.21749 0.85343 1.00434 1.08310 1.21963 0.90401 0.83592 0.74027 1.90646 1.80569 1.23128 1.49078 1.42808 1.00098 1.12043 1.72639 1.19569 0.86129 0.92511 1.00650 1.21738 0.92230 0.98557 1.20056 1.23162 0.98407 0.87056 1.00837 1.48578 1.05298 1.04257 1.54461 1.19429 0.75227 0.93882 0.97497 1.22274 1.03007 1.27635 1.13011 0.93621 1.27329 0.91176 0.99595 1.03891 1.70948 1.32706 1.36656 1.15535 0.82866 0.76723 0.74258 0.71980 1.19992 1.19686 1.19863 1.77256 0.89200 1.20645 1.30403 0.87293 0.90811 0.86562 0.84799 0.84869 0.93542 0.93452 0.84620 0.84768 0.73436 0.81731 0.78350 0.92974 0.96491 0.93021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.05 10.25 71.24 0.73 -0.32 16 2 C 0.35 4.57 7.27 29.10 0.21 4.78 16 3 O -0.52 -13.14 16.72 -1.42 -0.02 -13.17 16 4 C -0.17 -1.16 5.62 29.85 0.17 -0.99 16 5 C -0.10 -1.63 3.79 30.59 0.12 -1.51 16 6 C -0.12 -1.48 5.70 29.85 0.17 -1.31 16 7 C 0.51 13.25 7.80 87.66 0.68 13.93 16 8 O -0.56 -19.68 13.11 -3.06 -0.04 -19.72 16 9 N -0.63 -17.93 5.45 -307.52 -1.68 -19.60 16 10 C 0.27 10.74 8.11 133.32 1.08 11.82 16 11 C -0.29 -11.98 9.61 22.11 0.21 -11.77 16 12 C 0.05 2.19 11.44 83.52 0.96 3.15 16 13 N -0.34 -16.56 3.67 -351.83 -1.29 -17.85 16 14 C 0.26 13.54 5.57 85.64 0.48 14.01 16 15 C -0.62 -35.64 9.24 25.60 0.24 -35.40 16 16 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 17 C -0.02 -1.14 5.46 84.65 0.46 -0.68 16 18 N -0.92 -54.23 13.65 21.45 0.29 -53.93 16 19 Si 1.12 49.68 29.90 68.60 2.05 51.73 16 20 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 21 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 22 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 23 N -0.34 -16.23 12.42 -54.45 -0.68 -16.91 16 24 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 25 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 26 H 0.12 -0.11 8.12 -2.38 -0.02 -0.13 16 27 H 0.13 0.11 8.14 -2.39 -0.02 0.10 16 28 H 0.13 0.15 8.14 -2.39 -0.02 0.13 16 29 H 0.05 1.05 8.06 -2.39 -0.02 1.03 16 30 H 0.05 1.06 8.06 -2.39 -0.02 1.04 16 31 H 0.14 0.77 8.14 -2.39 -0.02 0.76 16 32 H 0.13 0.82 8.14 -2.38 -0.02 0.80 16 33 H 0.43 9.13 8.82 -92.71 -0.82 8.31 16 34 H 0.17 6.58 5.92 -2.91 -0.02 6.57 16 35 H 0.20 6.50 8.06 -2.91 -0.02 6.48 16 36 H 0.05 2.62 7.94 -2.39 -0.02 2.60 16 37 H 0.02 0.94 8.00 -2.39 -0.02 0.92 16 38 H 0.26 15.16 7.22 -92.71 -0.67 14.49 16 Total: -1.00 -84.19 332.96 4.50 -79.69 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: 0.36 Total: 14.05 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: 5.50 Total: -4.30 kcal Atomic # 7 Polarization: -104.94 SS G_CDS: -3.35 Total: -108.29 kcal Atomic # 8 Polarization: -32.82 SS G_CDS: -0.06 Total: -32.89 kcal Atomic # 14 Polarization: 49.68 SS G_CDS: 2.05 Total: 51.73 kcal Total: -84.19 4.50 -79.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186658343.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.697 kcal (2) G-P(sol) polarization free energy of solvation -84.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds