Wall clock time and date at job start Tue Mar 31 2020 01:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21278 * 120.00033 * 2 1 4 4 N 1.34779 * 119.99735 * 180.02562 * 2 1 3 5 5 C 1.47068 * 136.06001 * 359.62003 * 4 2 1 6 6 C 1.53232 * 88.08401 * 207.20841 * 5 4 2 7 7 C 1.50704 * 114.32916 * 220.47066 * 6 5 4 8 8 O 1.21282 * 119.99419 * 93.76119 * 7 6 5 9 9 N 1.34773 * 119.99989 * 273.76178 * 7 6 5 10 10 C 1.46500 * 119.99972 * 179.97438 * 9 7 6 11 11 C 1.50700 * 109.46969 * 90.00350 * 10 9 7 12 12 H 1.08002 * 119.99845 * 359.97438 * 11 10 9 13 13 C 1.37873 * 120.00022 * 180.02562 * 11 10 9 14 14 N 1.31519 * 119.99925 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00026 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47205 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47131 * 119.99861 * 15 13 11 18 18 H 1.48497 * 109.47267 * 239.99723 * 15 13 11 19 19 C 1.46498 * 120.00087 * 0.02562 * 9 7 6 20 20 C 1.53002 * 109.47385 * 89.99772 * 19 9 7 21 21 C 1.47201 * 109.47079 * 179.97438 * 20 19 9 22 22 N 6.92232 * 72.44370 * 152.30696 * 2 1 3 23 23 C 1.47067 * 136.05232 * 180.02562 * 4 2 1 24 24 H 1.09002 * 109.47152 * 269.99891 * 1 2 3 25 25 H 1.09001 * 109.46980 * 149.99992 * 1 2 3 26 26 H 1.09004 * 109.47113 * 29.99972 * 1 2 3 27 27 H 1.08992 * 113.46685 * 321.94854 * 5 4 2 28 28 H 1.09001 * 113.46148 * 92.38027 * 5 4 2 29 29 H 1.09006 * 114.19295 * 87.73034 * 6 5 4 30 30 H 1.08997 * 109.47011 * 210.00380 * 10 9 7 31 31 H 1.09001 * 109.47165 * 330.00250 * 10 9 7 32 32 H 0.96994 * 119.99758 * 180.02562 * 14 13 11 33 33 H 1.08997 * 109.47396 * 209.99933 * 19 9 7 34 34 H 1.09008 * 109.47192 * 329.99330 * 19 9 7 35 35 H 1.09005 * 109.46889 * 299.99541 * 20 19 9 36 36 H 1.08995 * 109.47165 * 59.99854 * 20 19 9 37 37 H 1.08996 * 113.47127 * 267.61738 * 23 4 2 38 38 H 1.09001 * 113.46732 * 38.00701 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.8265 -2.5946 0.0056 6 6 3.1647 -2.8710 0.6990 7 6 3.8766 -4.1043 0.2054 8 8 4.7082 -4.0137 -0.6728 9 7 3.5891 -5.3076 0.7399 10 6 4.2807 -6.5065 0.2597 11 6 5.5303 -6.7252 1.0731 12 1 5.7842 -6.0394 1.8679 13 6 6.3501 -7.8001 0.8019 14 7 6.0412 -8.6348 -0.1663 15 14 7.8995 -8.0707 1.8097 16 1 8.0190 -6.9995 2.8312 17 1 7.8266 -9.3916 2.4845 18 1 9.0842 -8.0366 0.9150 19 6 2.5842 -5.4170 1.8002 20 6 1.2071 -5.6509 1.1757 21 6 0.1975 -5.7613 2.2413 22 7 -0.5810 -5.8439 3.0672 23 6 3.5942 -1.5740 -0.0002 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 -0.8900 -0.5138 26 1 -0.3633 0.8900 -0.5138 27 1 0.9614 -2.8244 0.6275 28 1 1.7565 -3.0286 -0.9918 29 1 3.1274 -2.8012 1.7861 30 1 3.6242 -7.3705 0.3628 31 1 4.5479 -6.3764 -0.7890 32 1 6.6177 -9.3912 -0.3568 33 1 2.8340 -6.2535 2.4528 34 1 2.5676 -4.4950 2.3817 35 1 0.9572 -4.8142 0.5233 36 1 1.2237 -6.5727 0.5944 37 1 4.0003 -1.7333 -0.9991 38 1 4.2290 -0.9373 0.6161 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188402024.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:56 Heat of formation + Delta-G solvation = -3.805222 kcal Electronic energy + Delta-G solvation = -21654.882186 eV Core-core repulsion = 18306.247016 eV Total energy + Delta-G solvation = -3348.635170 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.93838 -39.06471 -37.49327 -36.88805 -35.35364 -32.96177 -31.32430 -30.96516 -29.10757 -27.31163 -26.15485 -24.25647 -24.00841 -21.91491 -19.22416 -18.62150 -17.78582 -17.18566 -17.04007 -16.51371 -16.06687 -15.64727 -15.18874 -14.79973 -14.74185 -14.23753 -13.92464 -13.64925 -13.18593 -12.96536 -12.84905 -12.72276 -12.59716 -12.49882 -12.38618 -12.10436 -11.96441 -11.82886 -11.36238 -11.15288 -10.92755 -10.84180 -10.66368 -10.25538 -10.07677 -9.76770 -9.22818 -8.83920 -8.53470 -7.97956 -6.15281 -4.20073 2.44515 2.58948 2.65971 2.71729 3.00635 3.24628 3.33409 3.36146 3.52929 4.07673 4.16071 4.29490 4.37134 4.70482 4.82358 4.89846 4.97629 5.03402 5.07196 5.13317 5.16247 5.21439 5.29676 5.32387 5.48142 5.59747 5.69068 5.72346 5.95183 6.01680 6.81363 7.24480 7.32270 7.48296 7.53896 7.80652 7.97304 8.08915 8.11820 8.70223 8.87268 9.46096 10.92911 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.016831 B = 0.004807 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.189609 B = 5823.835045 C = 7036.829100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.540 3.460 3 O -0.548 6.548 4 N -0.649 5.649 5 C 0.114 3.886 6 C -0.157 4.157 7 C 0.521 3.479 8 O -0.525 6.525 9 N -0.591 5.591 10 C 0.244 3.756 11 C -0.530 4.530 12 H 0.059 0.941 13 C 0.063 3.937 14 N -0.893 5.893 15 Si 0.897 3.103 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.283 1.283 19 C 0.116 3.884 20 C -0.052 4.052 21 C 0.215 3.785 22 N -0.442 5.442 23 C 0.124 3.876 24 H 0.093 0.907 25 H 0.079 0.921 26 H 0.093 0.907 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.125 0.875 30 H 0.036 0.964 31 H 0.048 0.952 32 H 0.264 0.736 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.104 0.896 36 H 0.119 0.881 37 H 0.103 0.897 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.040 8.916 0.817 15.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.331 3.669 3 O -0.426 6.426 4 N -0.385 5.385 5 C -0.009 4.009 6 C -0.179 4.179 7 C 0.306 3.694 8 O -0.401 6.401 9 N -0.322 5.322 10 C 0.125 3.875 11 C -0.569 4.569 12 H 0.078 0.922 13 C -0.139 4.139 14 N -0.532 5.532 15 Si 0.724 3.276 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.209 1.209 19 C -0.011 4.011 20 C -0.094 4.094 21 C -0.103 4.103 22 N -0.120 5.120 23 C 0.002 3.998 24 H 0.112 0.888 25 H 0.098 0.902 26 H 0.112 0.888 27 H 0.104 0.896 28 H 0.114 0.886 29 H 0.143 0.857 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.114 0.886 34 H 0.095 0.905 35 H 0.122 0.878 36 H 0.137 0.863 37 H 0.121 0.879 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.486 9.440 1.468 15.722 hybrid contribution 1.126 -0.417 0.278 1.233 sum -11.360 9.023 1.746 14.612 Atomic orbital electron populations 1.21836 0.91188 1.04818 1.04768 1.20367 0.90057 0.81261 0.75221 1.90734 1.70844 1.30311 1.50696 1.49679 1.10012 1.05332 1.73483 1.22981 0.96902 0.79729 1.01332 1.23174 0.97325 0.95123 1.02315 1.19749 0.83078 0.83764 0.82805 1.90722 1.33093 1.85393 1.30873 1.48212 1.38391 1.08957 1.36634 1.19402 0.91640 0.79806 0.96656 1.21439 1.07426 1.10438 1.17588 0.92248 1.24909 0.97985 0.95765 0.95252 1.69922 1.38373 1.14979 1.29888 0.86463 0.83085 0.77936 0.80067 1.19770 1.20980 1.20859 1.21340 0.85095 1.03991 0.90625 1.19973 0.90363 1.06283 0.92733 1.29162 0.93956 0.92949 0.94282 1.81315 1.10928 1.09213 1.10504 1.22849 0.83524 0.91319 1.02113 0.88844 0.90203 0.88790 0.89594 0.88609 0.85749 0.94562 0.93430 0.92667 0.88557 0.90500 0.87796 0.86307 0.87932 0.89908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.23 10.18 36.01 0.37 -0.86 16 2 C 0.54 6.56 8.19 -10.98 -0.09 6.47 16 3 O -0.55 -9.14 17.88 5.56 0.10 -9.05 16 4 N -0.65 -7.25 3.69 -185.39 -0.68 -7.94 16 5 C 0.11 0.98 6.37 -8.64 -0.05 0.92 16 6 C -0.16 -1.76 3.33 -91.40 -0.30 -2.07 16 7 C 0.52 8.38 7.24 -10.98 -0.08 8.31 16 8 O -0.52 -11.00 15.53 5.56 0.09 -10.91 16 9 N -0.59 -9.56 2.46 -175.06 -0.43 -9.99 16 10 C 0.24 5.34 5.16 -5.19 -0.03 5.32 16 11 C -0.53 -13.47 9.39 -34.44 -0.32 -13.79 16 12 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 13 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 14 N -0.89 -24.60 13.29 55.43 0.74 -23.87 16 15 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 16 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 19 C 0.12 1.32 5.19 -4.04 -0.02 1.30 16 20 C -0.05 -0.44 6.03 -29.52 -0.18 -0.62 16 21 C 0.21 2.22 15.44 -20.69 -0.32 1.90 16 22 N -0.44 -5.84 18.55 42.23 0.78 -5.06 16 23 C 0.12 1.55 7.97 -8.51 -0.07 1.48 16 24 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.08 0.44 7.94 -51.93 -0.41 0.03 16 26 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.09 0.49 7.25 -51.93 -0.38 0.11 16 28 H 0.10 0.78 8.10 -51.93 -0.42 0.36 16 29 H 0.12 1.19 6.87 -51.93 -0.36 0.83 16 30 H 0.04 0.79 8.07 -51.93 -0.42 0.37 16 31 H 0.05 1.20 7.42 -51.93 -0.39 0.82 16 32 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 33 H 0.10 1.21 8.07 -51.93 -0.42 0.79 16 34 H 0.08 0.70 6.18 -51.92 -0.32 0.38 16 35 H 0.10 0.65 5.53 -51.93 -0.29 0.36 16 36 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.10 1.40 7.45 -51.93 -0.39 1.01 16 38 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 333.76 15.07 5.03 5.03 Total: -1.00 -34.31 333.76 -5.62 -39.93 By element: Atomic # 1 Polarization: 1.36 SS G_CDS: -5.02 Total: -3.66 kcal Atomic # 6 Polarization: 11.13 SS G_CDS: -1.20 Total: 9.93 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: 0.41 Total: -46.86 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: 0.19 Total: -19.96 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.31 -5.62 -39.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188402024.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.123 kcal (2) G-P(sol) polarization free energy of solvation -34.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds