Wall clock time and date at job start Tue Mar 31 2020 01:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21278 * 120.00033 * 2 1 4 4 N 1.34779 * 119.99735 * 180.02562 * 2 1 3 5 5 C 1.47068 * 136.06001 * 359.62003 * 4 2 1 6 6 C 1.53232 * 88.08401 * 207.20841 * 5 4 2 7 7 C 1.50704 * 114.32916 * 220.47066 * 6 5 4 8 8 O 1.21282 * 119.99419 * 93.76119 * 7 6 5 9 9 N 1.34773 * 119.99989 * 273.76178 * 7 6 5 10 10 C 1.46500 * 119.99972 * 179.97438 * 9 7 6 11 11 C 1.50700 * 109.46969 * 90.00350 * 10 9 7 12 12 H 1.08002 * 119.99845 * 359.97438 * 11 10 9 13 13 C 1.37873 * 120.00022 * 180.02562 * 11 10 9 14 14 N 1.31519 * 119.99925 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00026 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47205 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47131 * 119.99861 * 15 13 11 18 18 H 1.48497 * 109.47267 * 239.99723 * 15 13 11 19 19 C 1.46498 * 120.00087 * 0.02562 * 9 7 6 20 20 C 1.53002 * 109.47385 * 89.99772 * 19 9 7 21 21 C 1.47201 * 109.47079 * 179.97438 * 20 19 9 22 22 N 6.92232 * 72.44370 * 152.30696 * 2 1 3 23 23 C 1.47067 * 136.05232 * 180.02562 * 4 2 1 24 24 H 1.09002 * 109.47152 * 269.99891 * 1 2 3 25 25 H 1.09001 * 109.46980 * 149.99992 * 1 2 3 26 26 H 1.09004 * 109.47113 * 29.99972 * 1 2 3 27 27 H 1.08992 * 113.46685 * 321.94854 * 5 4 2 28 28 H 1.09001 * 113.46148 * 92.38027 * 5 4 2 29 29 H 1.09006 * 114.19295 * 87.73034 * 6 5 4 30 30 H 1.08997 * 109.47011 * 210.00380 * 10 9 7 31 31 H 1.09001 * 109.47165 * 330.00250 * 10 9 7 32 32 H 0.96994 * 119.99758 * 180.02562 * 14 13 11 33 33 H 1.08997 * 109.47396 * 209.99933 * 19 9 7 34 34 H 1.09008 * 109.47192 * 329.99330 * 19 9 7 35 35 H 1.09005 * 109.46889 * 299.99541 * 20 19 9 36 36 H 1.08995 * 109.47165 * 59.99854 * 20 19 9 37 37 H 1.08996 * 113.47127 * 267.61738 * 23 4 2 38 38 H 1.09001 * 113.46732 * 38.00701 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.8265 -2.5946 0.0056 6 6 3.1647 -2.8710 0.6990 7 6 3.8766 -4.1043 0.2054 8 8 4.7082 -4.0137 -0.6728 9 7 3.5891 -5.3076 0.7399 10 6 4.2807 -6.5065 0.2597 11 6 5.5303 -6.7252 1.0731 12 1 5.7842 -6.0394 1.8679 13 6 6.3501 -7.8001 0.8019 14 7 6.0412 -8.6348 -0.1663 15 14 7.8995 -8.0707 1.8097 16 1 8.0190 -6.9995 2.8312 17 1 7.8266 -9.3916 2.4845 18 1 9.0842 -8.0366 0.9150 19 6 2.5842 -5.4170 1.8002 20 6 1.2071 -5.6509 1.1757 21 6 0.1975 -5.7613 2.2413 22 7 -0.5810 -5.8439 3.0672 23 6 3.5942 -1.5740 -0.0002 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 -0.8900 -0.5138 26 1 -0.3633 0.8900 -0.5138 27 1 0.9614 -2.8244 0.6275 28 1 1.7565 -3.0286 -0.9918 29 1 3.1274 -2.8012 1.7861 30 1 3.6242 -7.3705 0.3628 31 1 4.5479 -6.3764 -0.7890 32 1 6.6177 -9.3912 -0.3568 33 1 2.8340 -6.2535 2.4528 34 1 2.5676 -4.4950 2.3817 35 1 0.9572 -4.8142 0.5233 36 1 1.2237 -6.5727 0.5944 37 1 4.0003 -1.7333 -0.9991 38 1 4.2290 -0.9373 0.6161 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188402024.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:55 Heat of formation + Delta-G solvation = -27.750367 kcal Electronic energy + Delta-G solvation = -21655.920526 eV Core-core repulsion = 18306.247016 eV Total energy + Delta-G solvation = -3349.673510 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.94962 -40.21831 -38.54744 -37.88904 -36.62696 -34.81143 -32.28438 -32.06501 -30.09152 -28.79506 -26.99296 -25.58656 -25.22157 -23.24697 -20.14880 -19.74832 -18.83036 -18.35443 -18.16040 -17.96830 -17.21893 -16.73116 -16.39479 -16.01549 -15.88001 -15.51713 -15.05254 -14.60414 -14.33076 -14.14243 -13.88185 -13.65964 -13.53098 -13.43895 -13.34278 -13.20529 -13.11607 -12.93193 -12.85522 -12.64988 -12.48843 -12.16349 -11.89143 -11.68769 -11.59458 -11.09048 -10.55673 -10.51257 -9.81579 -9.45388 -8.15427 -6.26491 1.41136 1.44675 1.53782 1.55458 1.67908 1.74622 1.87591 1.91592 2.35227 2.48050 3.14917 3.18803 3.23708 3.52324 3.79509 3.94038 4.08038 4.18847 4.25254 4.35074 4.43423 4.54703 4.60035 4.62641 4.68162 4.77780 4.90400 5.03608 5.10798 5.14637 5.18573 5.40093 5.64548 5.90793 6.16731 6.66634 6.69485 6.76970 6.85568 7.07328 7.36630 7.51981 8.91266 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.016831 B = 0.004807 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.189609 B = 5823.835045 C = 7036.829100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.532 3.468 3 O -0.605 6.605 4 N -0.646 5.646 5 C 0.123 3.877 6 C -0.142 4.142 7 C 0.520 3.480 8 O -0.583 6.583 9 N -0.590 5.590 10 C 0.258 3.742 11 C -0.538 4.538 12 H 0.054 0.946 13 C 0.013 3.987 14 N -0.925 5.925 15 Si 0.953 3.047 16 H -0.268 1.268 17 H -0.275 1.275 18 H -0.287 1.287 19 C 0.110 3.890 20 C -0.039 4.039 21 C 0.246 3.754 22 N -0.489 5.489 23 C 0.112 3.888 24 H 0.114 0.886 25 H 0.106 0.894 26 H 0.095 0.905 27 H 0.133 0.867 28 H 0.104 0.896 29 H 0.152 0.848 30 H 0.038 0.962 31 H 0.007 0.993 32 H 0.264 0.736 33 H 0.084 0.916 34 H 0.109 0.891 35 H 0.137 0.863 36 H 0.123 0.877 37 H 0.083 0.917 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.134 9.270 2.033 17.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.325 3.675 3 O -0.487 6.487 4 N -0.381 5.381 5 C 0.001 3.999 6 C -0.164 4.164 7 C 0.307 3.693 8 O -0.463 6.463 9 N -0.319 5.319 10 C 0.137 3.863 11 C -0.577 4.577 12 H 0.072 0.928 13 C -0.186 4.186 14 N -0.565 5.565 15 Si 0.779 3.221 16 H -0.193 1.193 17 H -0.201 1.201 18 H -0.213 1.213 19 C -0.015 4.015 20 C -0.080 4.080 21 C -0.072 4.072 22 N -0.167 5.167 23 C -0.011 4.011 24 H 0.132 0.868 25 H 0.125 0.875 26 H 0.114 0.886 27 H 0.151 0.849 28 H 0.122 0.878 29 H 0.170 0.830 30 H 0.056 0.944 31 H 0.025 0.975 32 H 0.073 0.927 33 H 0.102 0.898 34 H 0.127 0.873 35 H 0.155 0.845 36 H 0.141 0.859 37 H 0.101 0.899 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.636 9.774 2.723 17.809 hybrid contribution 1.822 -0.520 -0.128 1.899 sum -12.814 9.254 2.595 16.018 Atomic orbital electron populations 1.21877 0.86943 1.06296 1.06479 1.21346 0.91926 0.80402 0.73796 1.90709 1.72312 1.32352 1.53317 1.49730 1.09237 1.06442 1.72716 1.23162 0.96670 0.77661 1.02367 1.23093 0.98375 0.91272 1.03621 1.20512 0.82319 0.84756 0.81667 1.90704 1.35782 1.86277 1.33512 1.48044 1.38917 1.07427 1.37551 1.18849 0.91210 0.82180 0.94074 1.21808 1.08655 1.09846 1.17390 0.92779 1.25656 1.00753 0.95925 0.96280 1.70015 1.39536 1.15601 1.31343 0.85581 0.79616 0.78170 0.78719 1.19276 1.20062 1.21347 1.21584 0.85127 1.05321 0.89439 1.19913 0.87941 1.07955 0.92200 1.29198 0.93149 0.91407 0.93417 1.81371 1.12556 1.10948 1.11846 1.22801 0.84800 0.92264 1.01262 0.86799 0.87496 0.88587 0.84945 0.87837 0.83027 0.94359 0.97460 0.92664 0.89769 0.87293 0.84535 0.85917 0.89876 0.90696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 10.18 71.24 0.73 -0.98 16 2 C 0.53 11.80 8.19 87.66 0.72 12.52 16 3 O -0.61 -20.04 17.88 -3.02 -0.05 -20.09 16 4 N -0.65 -12.81 3.69 -858.83 -3.17 -15.99 16 5 C 0.12 1.58 6.37 83.09 0.53 2.11 16 6 C -0.14 -2.80 3.33 -11.30 -0.04 -2.84 16 7 C 0.52 16.23 7.24 87.66 0.63 16.87 16 8 O -0.58 -25.09 15.53 -3.03 -0.05 -25.14 16 9 N -0.59 -18.31 2.46 -826.15 -2.03 -20.34 16 10 C 0.26 11.44 5.16 85.63 0.44 11.88 16 11 C -0.54 -27.56 9.39 25.60 0.24 -27.32 16 12 H 0.05 2.76 7.81 -2.91 -0.02 2.74 16 13 C 0.01 0.70 5.46 84.65 0.46 1.16 16 14 N -0.92 -51.78 13.29 21.45 0.28 -51.49 16 15 Si 0.95 42.42 29.54 68.60 2.03 44.44 16 16 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 17 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 18 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 19 C 0.11 2.15 5.19 86.38 0.45 2.60 16 20 C -0.04 -0.50 6.03 28.79 0.17 -0.33 16 21 C 0.25 4.18 15.44 89.42 1.38 5.56 16 22 N -0.49 -11.57 18.55 20.03 0.37 -11.20 16 23 C 0.11 2.72 7.97 83.18 0.66 3.39 16 24 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.11 0.60 7.94 -2.39 -0.02 0.58 16 26 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 27 H 0.13 0.57 7.25 -2.39 -0.02 0.55 16 28 H 0.10 1.27 8.10 -2.39 -0.02 1.25 16 29 H 0.15 2.23 6.87 -2.38 -0.02 2.21 16 30 H 0.04 1.67 8.07 -2.39 -0.02 1.65 16 31 H 0.01 0.38 7.42 -2.39 -0.02 0.36 16 32 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 33 H 0.08 1.92 8.07 -2.39 -0.02 1.90 16 34 H 0.11 1.48 6.18 -2.38 -0.01 1.46 16 35 H 0.14 0.92 5.53 -2.38 -0.01 0.91 16 36 H 0.12 1.65 8.14 -2.39 -0.02 1.64 16 37 H 0.08 2.35 7.45 -2.39 -0.02 2.33 16 38 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -79.58 333.76 4.84 -74.75 By element: Atomic # 1 Polarization: -0.65 SS G_CDS: 1.08 Total: 0.43 kcal Atomic # 6 Polarization: 18.24 SS G_CDS: 6.38 Total: 24.62 kcal Atomic # 7 Polarization: -94.47 SS G_CDS: -4.54 Total: -99.01 kcal Atomic # 8 Polarization: -45.13 SS G_CDS: -0.10 Total: -45.23 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.44 kcal Total: -79.58 4.84 -74.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188402024.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.997 kcal (2) G-P(sol) polarization free energy of solvation -79.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds