Wall clock time and date at job start Tue Mar 31 2020 00:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42898 * 109.46878 * 2 1 4 4 C 1.35481 * 117.00058 * 180.02562 * 3 2 1 5 5 C 1.39634 * 119.98046 * 179.72333 * 4 3 2 6 6 N 1.31536 * 120.03967 * 179.70397 * 5 4 3 7 7 C 1.33211 * 119.98643 * 0.57124 * 6 5 4 8 8 C 1.47903 * 120.02125 * 179.72849 * 7 6 5 9 9 O 1.21548 * 120.00328 * 172.80600 * 8 7 6 10 10 N 1.34775 * 120.00159 * 352.80165 * 8 7 6 11 11 C 1.46501 * 119.99958 * 2.15956 * 10 8 7 12 12 C 1.46503 * 120.00485 * 182.15214 * 10 8 7 13 13 H 1.09007 * 109.46659 * 0.02562 * 12 10 8 14 14 C 1.52995 * 109.47320 * 240.00716 * 12 10 8 15 15 C 1.50695 * 109.47284 * 119.99971 * 12 10 8 16 16 H 1.08000 * 119.99985 * 0.02562 * 15 12 10 17 17 C 1.37873 * 120.00266 * 180.02562 * 15 12 10 18 18 N 1.31521 * 119.99877 * 359.97438 * 17 15 12 19 19 Si 1.86799 * 120.00134 * 180.02562 * 17 15 12 20 20 H 1.48493 * 109.47147 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47141 * 120.00117 * 19 17 15 22 22 H 1.48509 * 109.46917 * 239.99796 * 19 17 15 23 23 C 1.39379 * 119.95388 * 359.70370 * 7 6 5 24 24 N 1.32081 * 119.96403 * 0.02562 * 23 7 6 25 25 H 1.09008 * 109.46854 * 299.99931 * 1 2 3 26 26 H 1.08999 * 109.47489 * 59.99910 * 1 2 3 27 27 H 1.09000 * 109.47058 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46762 * 240.00053 * 2 1 3 29 29 H 1.09001 * 109.47165 * 119.99678 * 2 1 3 30 30 H 1.08001 * 119.97978 * 359.97438 * 5 4 3 31 31 H 1.08996 * 109.47615 * 83.78159 * 11 10 8 32 32 H 1.09002 * 109.46801 * 203.78726 * 11 10 8 33 33 H 1.09001 * 109.46886 * 323.77685 * 11 10 8 34 34 H 1.09007 * 109.46784 * 299.99347 * 14 12 10 35 35 H 1.09002 * 109.47567 * 59.99380 * 14 12 10 36 36 H 1.09001 * 109.47272 * 179.97438 * 14 12 10 37 37 H 0.96998 * 119.99953 * 179.97438 * 18 17 15 38 38 H 1.08005 * 120.02055 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3494 1.5249 -0.0005 5 6 3.8826 2.8154 -0.0064 6 7 5.1864 2.9892 -0.0011 7 6 5.9988 1.9335 -0.0015 8 6 7.4650 2.1280 -0.0016 9 8 8.2049 1.1726 0.1298 10 7 7.9807 3.3646 -0.1474 11 6 7.0891 4.5217 -0.2584 12 6 9.4330 3.5518 -0.1948 13 1 9.9272 2.5851 -0.0978 14 6 9.8673 4.4646 0.9536 15 6 9.8157 4.1814 -1.5093 16 1 9.0534 4.4188 -2.2366 17 6 11.1390 4.4544 -1.7836 18 7 12.0673 4.1658 -0.8978 19 14 11.6133 5.2356 -3.4128 20 1 10.3927 5.4599 -4.2282 21 1 12.2869 6.5349 -3.1613 22 1 12.5376 4.3323 -4.1444 23 6 5.4662 0.6454 -0.0015 24 7 4.1567 0.4731 -0.0014 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.2241 3.6714 -0.0109 31 1 6.7984 4.8534 0.7384 32 1 7.6063 5.3307 -0.7742 33 1 6.1991 4.2418 -0.8221 34 1 9.3730 5.4313 0.8562 35 1 9.5905 4.0092 1.9045 36 1 10.9478 4.6035 0.9186 37 1 12.9983 4.3575 -1.0909 38 1 6.1239 -0.2113 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189133402.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:56 Heat of formation + Delta-G solvation = -6.945004 kcal Electronic energy + Delta-G solvation = -21555.971949 eV Core-core repulsion = 18207.200627 eV Total energy + Delta-G solvation = -3348.771322 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.45881 -39.30086 -38.20186 -35.47120 -34.32722 -32.75444 -32.38035 -30.59484 -29.12037 -26.18520 -25.27098 -25.20573 -24.59719 -22.93043 -21.52198 -19.14708 -18.83786 -17.90561 -16.73409 -16.72201 -16.15738 -15.66133 -15.06418 -14.90413 -14.86883 -14.30037 -14.05864 -13.72568 -13.02555 -12.93223 -12.80123 -12.59409 -12.34616 -12.14388 -11.88456 -11.59141 -11.39443 -11.07472 -11.01669 -10.84146 -10.69707 -10.62058 -10.22560 -10.16839 -9.71391 -9.13602 -8.84979 -8.80443 -8.42771 -7.56836 -6.07166 -4.14990 0.53546 0.94751 2.59115 3.11280 3.26876 3.34778 3.38175 3.69992 3.90672 3.95822 4.19143 4.37545 4.44825 4.66215 4.70291 5.00503 5.02250 5.17800 5.24198 5.32538 5.45926 5.47280 5.65850 5.90188 6.20428 6.33254 6.68278 6.77085 6.81341 6.88759 7.02268 7.07269 7.39487 7.50517 7.59530 7.71945 8.01366 8.18664 8.49116 8.78649 8.97409 9.51206 10.98287 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.035379 B = 0.003632 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.248535 B = 7708.433269 C = 7858.042275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.062 3.938 3 O -0.298 6.298 4 C 0.284 3.716 5 C 0.035 3.965 6 N -0.367 5.367 7 C 0.000 4.000 8 C 0.559 3.441 9 O -0.547 6.547 10 N -0.565 5.565 11 C 0.082 3.918 12 C 0.255 3.745 13 H 0.065 0.935 14 C -0.145 4.145 15 C -0.525 4.525 16 H 0.061 0.939 17 C 0.065 3.935 18 N -0.887 5.887 19 Si 0.899 3.101 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.283 1.283 23 C 0.151 3.849 24 N -0.503 5.503 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.180 0.820 31 H 0.043 0.957 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.031 0.969 35 H 0.012 0.988 36 H 0.094 0.906 37 H 0.263 0.737 38 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.142 -4.052 2.342 20.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.014 4.014 3 O -0.203 6.203 4 C 0.100 3.900 5 C -0.130 4.130 6 N -0.085 5.085 7 C -0.139 4.139 8 C 0.343 3.657 9 O -0.427 6.427 10 N -0.293 5.293 11 C -0.061 4.061 12 C 0.155 3.845 13 H 0.083 0.917 14 C -0.204 4.204 15 C -0.564 4.564 16 H 0.079 0.921 17 C -0.138 4.138 18 N -0.526 5.526 19 Si 0.727 3.273 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.008 4.008 24 N -0.232 5.232 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.098 0.902 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.197 0.803 31 H 0.062 0.938 32 H 0.089 0.911 33 H 0.104 0.896 34 H 0.050 0.950 35 H 0.031 0.969 36 H 0.113 0.887 37 H 0.073 0.927 38 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -19.725 -4.341 2.439 20.343 hybrid contribution 0.240 0.290 -0.874 0.952 sum -19.484 -4.051 1.565 19.962 Atomic orbital electron populations 1.21823 0.92716 1.03039 1.03425 1.22719 0.94996 0.80787 1.02880 1.86222 1.16070 1.31114 1.86915 1.21263 0.84983 0.91881 0.91829 1.23185 0.92319 0.94948 1.02584 1.69144 1.02436 1.31505 1.05370 1.22446 0.96546 0.90735 1.04214 1.17487 0.84588 0.84435 0.79164 1.90757 1.59130 1.40301 1.52477 1.48202 1.09854 1.05117 1.66166 1.22103 0.94029 0.89089 1.00912 1.19069 0.72816 0.97873 0.94737 0.91739 1.22077 1.04681 0.98150 0.95484 1.21348 0.92797 1.41190 1.01036 0.92071 1.24891 0.96237 0.95521 0.97122 1.69894 1.00870 1.47501 1.34288 0.86423 0.78530 0.78876 0.83470 1.19784 1.20911 1.20913 1.23520 0.89576 0.98045 0.89694 1.68216 1.05426 1.32555 1.17038 0.91545 0.91525 0.90173 0.91303 0.91319 0.80307 0.93820 0.91051 0.89613 0.94986 0.96938 0.88727 0.92711 0.79710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 10.28 37.16 0.38 -0.52 16 2 C 0.06 0.53 6.04 37.16 0.22 0.75 16 3 O -0.30 -3.24 10.12 -18.13 -0.18 -3.42 16 4 C 0.28 3.57 7.50 -16.71 -0.13 3.45 16 5 C 0.04 0.43 11.18 -17.16 -0.19 0.24 16 6 N -0.37 -5.57 6.20 -9.49 -0.06 -5.62 16 7 C 0.00 -0.01 6.61 -82.89 -0.55 -0.55 16 8 C 0.56 12.03 7.65 -12.30 -0.09 11.94 16 9 O -0.55 -13.29 15.69 5.32 0.08 -13.20 16 10 N -0.56 -12.60 2.75 -176.36 -0.49 -13.08 16 11 C 0.08 1.52 8.25 59.85 0.49 2.02 16 12 C 0.25 6.59 2.63 -69.09 -0.18 6.41 16 13 H 0.06 1.90 6.90 -51.93 -0.36 1.55 16 14 C -0.15 -3.54 8.97 37.15 0.33 -3.20 16 15 C -0.53 -14.28 7.95 -34.44 -0.27 -14.56 16 16 H 0.06 1.65 7.44 -52.49 -0.39 1.26 16 17 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 18 N -0.89 -25.09 11.32 55.43 0.63 -24.46 16 19 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 20 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 C 0.15 2.27 10.76 -17.02 -0.18 2.09 16 24 N -0.50 -6.91 9.37 -12.76 -0.12 -7.03 16 25 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 26 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.60 8.11 -51.93 -0.42 0.18 16 29 H 0.07 0.60 8.11 -51.93 -0.42 0.18 16 30 H 0.18 1.59 8.06 -52.49 -0.42 1.16 16 31 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 1.38 7.12 -51.93 -0.37 1.01 16 33 H 0.09 1.46 5.26 -52.04 -0.27 1.18 16 34 H 0.03 0.72 7.67 -51.93 -0.40 0.32 16 35 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.09 2.50 6.07 -51.93 -0.32 2.18 16 37 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 38 H 0.19 2.61 7.65 -52.48 -0.40 2.21 16 LS Contribution 320.84 15.07 4.84 4.84 Total: -1.00 -30.96 320.84 -5.60 -36.56 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -5.02 Total: -0.37 kcal Atomic # 6 Polarization: 9.99 SS G_CDS: -0.26 Total: 9.73 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: -0.04 Total: -50.20 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -0.10 Total: -16.62 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.96 -5.60 -36.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189133402.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.619 kcal (2) G-P(sol) polarization free energy of solvation -30.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds